Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:33:37 (2434351): wrapper (7.7.26015): starting
06:33:37 (2434351): wrapper: running run_atlas (--nthreads 4)
[2026-04-03 06:33:37] Arguments: --nthreads 4
[2026-04-03 06:33:37] Threads: 4
[2026-04-03 06:33:37] Checking for CVMFS
[2026-04-03 06:33:37] No cvmfs_config command found, will try listing directly
[2026-04-03 06:33:37] CVMFS is ok
[2026-04-03 06:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-03 06:33:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-03 06:33:37] Further information can be found at the LHC@home message board.
[2026-04-03 06:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-03 06:33:37] Checking for apptainer binary...
[2026-04-03 06:33:37] which: no apptainer in ((null))
[2026-04-03 06:33:37] apptainer is not installed, using version from CVMFS
[2026-04-03 06:33:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-03 06:33:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-04-03 06:33:37] apptainer works
[2026-04-03 06:33:37] Set ATHENA_PROC_NUMBER=4
[2026-04-03 06:33:37] Set ATHENA_CORE_NUMBER=4
[2026-04-03 06:33:37] Starting ATLAS job with PandaID=7056947792
[2026-04-03 06:33:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-03 11:44:44]  *** The last 200 lines of the pilot log: ***
[2026-04-03 11:44:44] 2026-04-03 09:27:55,955 | INFO     | mean x: 1775199662.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,955 | INFO     | mean y: 2324575.117647059
[2026-04-03 11:44:44] 2026-04-03 09:27:55,955 | INFO     | intersect: -2966231517.5891924
[2026-04-03 11:44:44] 2026-04-03 09:27:55,956 | INFO     | chi2: 2.19104218539625
[2026-04-03 11:44:44] 2026-04-03 09:27:55,956 | INFO     | sum of square deviations: 7102775035.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,959 | INFO     | sum of deviations: 30048061095.499992
[2026-04-03 11:44:44] 2026-04-03 09:27:55,959 | INFO     | mean x: 1775199509.5
[2026-04-03 11:44:44] 2026-04-03 09:27:55,959 | INFO     | mean y: 2331477.4683098593
[2026-04-03 11:44:44] 2026-04-03 09:27:55,959 | INFO     | intersect: -7507592890.868048
[2026-04-03 11:44:44] 2026-04-03 09:27:55,960 | INFO     | chi2: 1.414718679633669
[2026-04-03 11:44:44] 2026-04-03 09:27:55,960 | INFO     | current chi2=1.414718679633669 (change=35.43170053670978 %)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,960 | INFO     | sum of square deviations: 6734191380.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,962 | INFO     | sum of deviations: 29355012675.999992
[2026-04-03 11:44:44] 2026-04-03 09:27:55,962 | INFO     | mean x: 1775199357.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,963 | INFO     | mean y: 2331190.6953405016
[2026-04-03 11:44:44] 2026-04-03 09:27:55,963 | INFO     | intersect: -7735940071.081903
[2026-04-03 11:44:44] 2026-04-03 09:27:55,963 | INFO     | chi2: 1.4151930977782299
[2026-04-03 11:44:44] 2026-04-03 09:27:55,963 | INFO     | current chi2=1.4151930977782299 (change=-0.03353445115206133 %)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,963 | INFO     | right removable region: 278
[2026-04-03 11:44:44] 2026-04-03 09:27:55,964 | INFO     | sum of square deviations: 7102775035.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,966 | INFO     | sum of deviations: -26035598154.5
[2026-04-03 11:44:44] 2026-04-03 09:27:55,966 | INFO     | mean x: 1775199814.5
[2026-04-03 11:44:44] 2026-04-03 09:27:55,966 | INFO     | mean y: 2339838.7640845072
[2026-04-03 11:44:44] 2026-04-03 09:27:55,966 | INFO     | intersect: 6509428798.574416
[2026-04-03 11:44:44] 2026-04-03 09:27:55,967 | INFO     | chi2: 0.8188510319426184
[2026-04-03 11:44:44] 2026-04-03 09:27:55,967 | INFO     | current chi2=0.8188510319426184 (change=62.6273269679411 %)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,967 | INFO     | sum of square deviations: 6734191380.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,969 | INFO     | sum of deviations: -26070828552.000004
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | mean x: 1775199967.0
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | mean y: 2339842.7741935486
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | intersect: 6874870095.273948
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | chi2: 0.8150102849088336
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | current chi2=0.8150102849088336 (change=0.4690409957319232 %)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,970 | INFO     | left removable region: 20
[2026-04-03 11:44:44] 2026-04-03 09:27:55,971 | INFO     | sum of square deviations: 5325139844.5
[2026-04-03 11:44:44] 2026-04-03 09:27:55,973 | INFO     | sum of deviations: -4521899957.499996
[2026-04-03 11:44:44] 2026-04-03 09:27:55,973 | INFO     | mean x: 1775199936.5
[2026-04-03 11:44:44] 2026-04-03 09:27:55,973 | INFO     | mean y: 2345381.996124031
[2026-04-03 11:44:44] 2026-04-03 09:27:55,973 | INFO     | intersect: 1509775562.5770552
[2026-04-03 11:44:44] 2026-04-03 09:27:55,974 | INFO     | chi2: 0.020787169749894294
[2026-04-03 11:44:44] 2026-04-03 09:27:55,974 | INFO     | current memory leak: -0.85 B/s (using 258 data points, chi2=0.02)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,974 | INFO     | could have reported an average CPU frequency of 2707 MHz (13 samples)
[2026-04-03 11:44:44] 2026-04-03 09:27:55,974 | INFO     | ..............................
[2026-04-03 11:44:44] 2026-04-03 09:27:55,974 | INFO     | . Timing measurements:
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . get job = 0 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . initial setup = 8 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . payload setup = 16 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . stage-in = 0 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . payload execution = 17596 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . stage-out = 1 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | . log creation = 0 s
[2026-04-03 11:44:44] 2026-04-03 09:27:55,975 | INFO     | ..............................
[2026-04-03 11:44:44] 2026-04-03 09:27:56,089 | INFO     | 
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | job summary report
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | --------------------------------------------------
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | PanDA job id: 7056947792
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | task id: 49179056
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | errors: (none)
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-03 11:44:44] 2026-04-03 09:27:56,090 | INFO     | pilot state: finished 
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | transexitcode: 0
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | exeerrorcode: 0
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | exeerrordiag: 
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | exitcode: 0
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | exitmsg: OK
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | cpuconsumptiontime: 68787 s
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | nevents: 400
[2026-04-03 11:44:44] 2026-04-03 09:27:56,091 | INFO     | neventsw: 0
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | pid: 2443766
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | pgrp: 2443766
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | corecount: 4
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | event service: False
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | sizes: {0: 2279802, 1: 2280319, 12: 2280319, 17616: 2313421, 17619: 2322443, 17622: 2322821}
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | --------------------------------------------------
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | 
[2026-04-03 11:44:44] 2026-04-03 09:27:56,092 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/0
[2026-04-03 11:44:44] 2026-04-03 09:27:56,137 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,137 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,139 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-03 11:44:44] 2026-04-03 09:27:56,140 | INFO     | job 7056947792 has completed (purged errors)
[2026-04-03 11:44:44] 2026-04-03 09:27:56,140 | INFO     | overall cleanup function is called
[2026-04-03 11:44:44] 2026-04-03 09:27:56,954 | WARNING  | process 2443766 can no longer be monitored (due to stat problems) - aborting
[2026-04-03 11:44:44] 2026-04-03 09:27:57,150 | INFO     | --- collectZombieJob: --- 10, [2443766]
[2026-04-03 11:44:44] 2026-04-03 09:27:57,152 | INFO     | zombie collector waiting for pid 2443766
[2026-04-03 11:44:44] 2026-04-03 09:27:57,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-03 11:44:44] 2026-04-03 09:27:57,152 | INFO     | collected zombie processes
[2026-04-03 11:44:44] 2026-04-03 09:27:57,152 | INFO     | will attempt to kill all subprocesses of pid=2443766
[2026-04-03 11:44:44] 2026-04-03 09:27:58,509 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-03 11:44:44] 2026-04-03 09:27:58,510 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-03 11:44:44] 2026-04-03 09:27:58,511 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-03 11:44:44] 2026-04-03 09:27:58,511 | WARNING  | maxPSS not found in memory monitor output
[2026-04-03 11:44:44] 2026-04-03 09:27:58,512 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7056947792/payload.stdout) since it has not been created yet
[2026-04-03 11:44:44] 2026-04-03 09:27:58,512 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-04-03 11:44:44] 2026-04-03 09:27:58,541 | INFO     | sufficient remaining disk space (292461477888 B)
[2026-04-03 11:44:44] 2026-04-03 09:27:58,542 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-03 11:44:44] 2026-04-03 09:27:58,542 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7056947792/HITS.49179056._000060.pool.root.1 since it does not exist
[2026-04-03 11:44:44] 2026-04-03 09:27:59,861 | INFO     | process IDs to be killed: [2443766] (in reverse order)
[2026-04-03 11:44:44] 2026-04-03 09:28:00,204 | WARNING  | found no corresponding commands to process id(s)
[2026-04-03 11:44:44] 2026-04-03 09:28:00,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-03 11:44:44] 2026-04-03 09:28:00,296 | INFO     | did not find any defunct processes belonging to 2443766
[2026-04-03 11:44:44] 2026-04-03 09:28:00,365 | INFO     | number of running child processes to parent process 2443766: 1
[2026-04-03 11:44:44] 2026-04-03 09:28:00,366 | INFO     | maximum number of monitored processes: 6
[2026-04-03 11:44:44] 2026-04-03 09:28:00,366 | INFO     | aborting job monitoring since job object (job id=7056947792) has expired
[2026-04-03 11:44:44] 2026-04-03 09:28:00,372 | INFO     | did not find any defunct processes belonging to 2443766
[2026-04-03 11:44:44] 2026-04-03 09:28:00,372 | INFO     | ready for new job
[2026-04-03 11:44:44] 2026-04-03 09:28:00,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-03 11:44:44] 2026-04-03 09:28:00,375 | INFO     | **************************************
[2026-04-03 11:44:44] 2026-04-03 09:28:00,379 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-03 11:44:44] 2026-04-03 09:28:00,379 | INFO     | **************************************
[2026-04-03 11:44:44] 2026-04-03 09:28:00,379 | INFO     | 
[2026-04-03 11:44:44] 2026-04-03 09:28:00,388 | INFO     | architecture information:
[2026-04-03 11:44:44] 2026-04-03 09:28:00,389 | INFO     | executing command: cat /etc/os-release
[2026-04-03 11:44:44] 2026-04-03 09:28:00,414 | INFO     | cat /etc/os-release:
[2026-04-03 11:44:44] NAME="CentOS Linux"
[2026-04-03 11:44:44] VERSION="7 (Core)"
[2026-04-03 11:44:44] ID="centos"
[2026-04-03 11:44:44] ID_LIKE="rhel fedora"
[2026-04-03 11:44:44] VERSION_ID="7"
[2026-04-03 11:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-03 11:44:44] ANSI_COLOR="0;31"
[2026-04-03 11:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-03 11:44:44] HOME_URL="https://www.centos.org/"
[2026-04-03 11:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-03 11:44:44] 
[2026-04-03 11:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-03 11:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-03 11:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-03 11:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-03 11:44:44] 
[2026-04-03 11:44:44] 2026-04-03 09:28:00,414 | INFO     | **************************************
[2026-04-03 11:44:44] 2026-04-03 09:28:00,917 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-04-03 11:44:44] 2026-04-03 09:28:00,944 | INFO     | sufficient remaining disk space (292463575040 B)
[2026-04-03 11:44:44] 2026-04-03 09:28:00,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-03 11:44:44] 2026-04-03 09:28:00,945 | INFO     | current server update state: UPDATING_FINAL
[2026-04-03 11:44:44] 2026-04-03 09:28:00,945 | INFO     | update_server=False
[2026-04-03 11:44:44] 2026-04-03 09:28:00,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-03 11:44:44] 2026-04-03 09:28:00,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-03 11:44:44] 2026-04-03 09:28:00,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-03 11:44:44] 2026-04-03 09:28:00,946 | INFO     | will abort loop
[2026-04-03 11:44:44] 2026-04-03 09:28:01,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-03 11:44:44] 2026-04-03 09:28:01,224 | INFO     | all payload control threads have been joined
[2026-04-03 11:44:44] 2026-04-03 09:28:01,585 | INFO     | all job control threads have been joined
[2026-04-03 11:44:44] 2026-04-03 09:28:01,781 | INFO     | all data control threads have been joined
[2026-04-03 11:44:44] 2026-04-03 09:28:01,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-03 11:44:44] 2026-04-03 09:28:01,950 | INFO     | [job] retrieve thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:01,956 | INFO     | [job] job monitor thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,099 | INFO     | [job] queue monitor thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,229 | INFO     | [payload] control thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,236 | INFO     | [payload] failed_post thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,249 | INFO     | [job] validate thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,388 | INFO     | [payload] validate_post thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,572 | INFO     | [job] create_data_payload thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,591 | INFO     | [job] control thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,787 | INFO     | [data] control thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:02,952 | INFO     | [data] copytool_out thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:03,128 | INFO     | [payload] execute_payloads thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:03,415 | INFO     | [payload] validate_pre thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:03,421 | INFO     | [data] copytool_in thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:05,926 | INFO     | [data] queue_monitor thread has finished
[2026-04-03 11:44:44] 2026-04-03 09:28:28,320 | INFO     | PID=2438422 has CPU usage=19.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-03 11:44:44] 2026-04-03 09:28:28,321 | INFO     | .. there are 19 such processes running
[2026-04-03 11:44:44] 2026-04-03 09:28:28,321 | INFO     | found 0 job(s) in 20 queues
[2026-04-03 11:44:44] 2026-04-03 09:28:28,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-03 11:44:44] 2026-04-03 09:28:28,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-03 11:44:44] 2026-04-03 09:28:30,659 | INFO     | [monitor] cgroup control has ended
[2026-04-03 11:44:44] 2026-04-03 09:28:31,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23086825072448)>', '<ExcThread(monitor, started 23086518753024)>']
[2026-04-03 11:44:44] 2026-04-03 09:28:31,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-03 11:44:44] 2026-04-03 09:28:31,336 | INFO     | [monitor] control thread has ended
[2026-04-03 11:44:44] 2026-04-03 09:28:36,342 | INFO     | all workflow threads have been joined
[2026-04-03 11:44:44] 2026-04-03 09:28:36,343 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-03 11:44:44] 2026-04-03 09:28:36,343 | INFO     | traces error code: 0
[2026-04-03 11:44:44] 2026-04-03 09:28:36,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-03 11:44:44] 2026-04-03 09:28:36,473 [wrapper] ==== pilot stdout END ====
[2026-04-03 11:44:44] 2026-04-03 09:28:36,478 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-03 11:44:44] 2026-04-03 09:28:36,482 [wrapper] pilotpid: 2438422
[2026-04-03 11:44:44] 2026-04-03 09:28:36,486 [wrapper] Pilot exit status: 0
[2026-04-03 11:44:44] 2026-04-03 09:28:36,504 [wrapper] pandaids: 7056947792
[2026-04-03 11:44:44] 2026-04-03 09:28:36,716 [wrapper] cleanup supervisor_pilot 3040705 2438423
[2026-04-03 11:44:44] 2026-04-03 09:28:36,720 [wrapper] Test setup, not cleaning
[2026-04-03 11:44:44] 2026-04-03 09:28:36,724 [wrapper] apfmon messages muted
[2026-04-03 11:44:44] 2026-04-03 09:28:36,728 [wrapper] ==== wrapper stdout END ====
[2026-04-03 11:44:44] 2026-04-03 09:28:36,731 [wrapper] ==== wrapper stderr END ====
[2026-04-03 11:44:44]  *** Error codes and diagnostics ***
[2026-04-03 11:44:44]     "exeErrorCode": 0,
[2026-04-03 11:44:44]     "exeErrorDiag": "",
[2026-04-03 11:44:44]     "pilotErrorCode": 0,
[2026-04-03 11:44:44]     "pilotErrorDiag": "",
[2026-04-03 11:44:44]  *** Listing of results directory ***
[2026-04-03 11:44:44] total 417768
[2026-04-03 11:44:44] -rwx------. 1 boinc boinc     36322 Mar 22 15:13 runpilot2-wrapper.sh
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc    585013 Mar 22 17:16 pilot3.tar.gz
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc      5111 Mar 22 17:18 queuedata.json
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc       100 Apr  3 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-03 11:44:44] -rwxr-xr-x. 1 boinc boinc      7986 Apr  3 06:33 run_atlas
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc       105 Apr  3 06:33 job.xml
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc      6624 Apr  3 06:33 init_data.xml
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc 218922995 Apr  3 06:33 EVNT.49130490._000003.pool.root.1
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc     15845 Apr  3 06:33 start_atlas.sh
[2026-04-03 11:44:44] drwxrwx--x. 2 boinc boinc      4096 Apr  3 06:33 shared
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc    597544 Apr  3 06:33 input.tar.gz
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc         0 Apr  3 06:33 boinc_lockfile
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc      2598 Apr  3 06:33 pandaJob.out
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc   1005167 Apr  3 06:33 agis_schedconf.cvmfs.json
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc       444 Apr  3 06:34 workernode_map.json
[2026-04-03 11:44:44] drwx------. 5 boinc boinc      4096 Apr  3 06:34 pilot3
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc 199216276 Apr  3 11:27 HITS.49179056._000060.pool.root.1
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc       530 Apr  3 11:27 boinc_task_state.xml
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc        95 Apr  3 11:27 pilot_heartbeat.json
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc      1043 Apr  3 11:27 memory_monitor_summary.json
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc   1511579 Apr  3 11:27 agis_ddmendpoints.agis.ALL.json
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc    441743 Apr  3 11:27 log.49179056._000060.job.log.tgz.1
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc      6348 Apr  3 11:27 heartbeat.json
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc      4834 Apr  3 11:28 pilotlog.txt
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc   2418813 Apr  3 11:28 log.49179056._000060.job.log.1
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc       357 Apr  3 11:28 output.list
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc       620 Apr  3 11:28 runtime_log
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc   2877440 Apr  3 11:28 result.tar.gz
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc      9222 Apr  3 11:28 runtime_log.err
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc       666 Apr  3 11:28 LIeMDmNjYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbx3LDmhi4Y1n.diag
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc        28 Apr  3 11:44 wrapper_checkpoint.txt
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc      8192 Apr  3 11:44 boinc_mmap_file
[2026-04-03 11:44:44] -rw-r--r--. 1 boinc boinc     21269 Apr  3 11:44 stderr.txt
[2026-04-03 11:44:44] HITS file was successfully produced:
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc 199216276 Apr  3 11:27 shared/HITS.pool.root.1
[2026-04-03 11:44:44]  *** Contents of shared directory: ***
[2026-04-03 11:44:44] total 411760
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc 218922995 Apr  3 06:33 ATLAS.root_0
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc     15845 Apr  3 06:33 start_atlas.sh
[2026-04-03 11:44:44] -rw-r--r--. 2 boinc boinc    597544 Apr  3 06:33 input.tar.gz
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc 199216276 Apr  3 11:27 HITS.pool.root.1
[2026-04-03 11:44:44] -rw-------. 1 boinc boinc   2877440 Apr  3 11:28 result.tar.gz
11:44:45 (2434351): run_atlas exited; CPU time 70042.884640
11:44:45 (2434351): called boinc_finish(0)

</stderr_txt>
]]>

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