Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:39 (1545414): wrapper (7.7.26015): starting
14:53:39 (1545414): wrapper: running run_atlas (--nthreads 12)
[2026-04-06 14:53:39] Arguments: --nthreads 12
[2026-04-06 14:53:39] Threads: 12
[2026-04-06 14:53:39] Checking for CVMFS
[2026-04-06 14:53:39] No cvmfs_config command found, will try listing directly
[2026-04-06 14:53:39] CVMFS is ok
[2026-04-06 14:53:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-06 14:53:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-06 14:53:39] Further information can be found at the LHC@home message board.
[2026-04-06 14:53:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-06 14:53:39] Checking for apptainer binary...
[2026-04-06 14:53:39] which: no apptainer in ((null))
[2026-04-06 14:53:39] apptainer is not installed, using version from CVMFS
[2026-04-06 14:53:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-06 14:53:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-04-06 14:53:39] apptainer works
[2026-04-06 14:53:39] Set ATHENA_PROC_NUMBER=12
[2026-04-06 14:53:39] Set ATHENA_CORE_NUMBER=12
[2026-04-06 14:53:39] Starting ATLAS job with PandaID=7074314252
[2026-04-06 14:53:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-06 15:14:53]  *** The last 200 lines of the pilot log: ***
[2026-04-06 15:14:53]  direct_access_lan=False
[2026-04-06 15:14:53]  direct_access_wan=False
[2026-04-06 15:14:53]  domain=
[2026-04-06 15:14:53]  filesize=325954
[2026-04-06 15:14:53]  filetype=log
[2026-04-06 15:14:53]  guid=005d0ec4-c60c-4abe-a0fa-0324bcd432c5
[2026-04-06 15:14:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-06 15:14:53]  is_altstaged=None
[2026-04-06 15:14:53]  is_tar=False
[2026-04-06 15:14:53]  lfn=log.49499762._000163.job.log.tgz.1
[2026-04-06 15:14:53]  mtime=0
[2026-04-06 15:14:53]  protocol_id=None
[2026-04-06 15:14:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-06 15:14:53]  replicas=None
[2026-04-06 15:14:53]  scope=mc23_13p6TeV
[2026-04-06 15:14:53]  status=None
[2026-04-06 15:14:53]  status_code=0
[2026-04-06 15:14:53]  storage_token=
[2026-04-06 15:14:53]  surl=/var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7074314252/log.49499762._000163.job.log.tgz.1
[2026-04-06 15:14:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/c8/log.49499762._000163.job.log.tgz.1
[2026-04-06 15:14:53]  workdir=None
[2026-04-06 15:14:53] ]
[2026-04-06 15:14:53] 2026-04-06 13:13:49,446 | INFO     | transferring file log.49499762._000163.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7074314252/log.49499762._000163.job.log.tgz.1 to /var/lib/b
[2026-04-06 15:14:53] 2026-04-06 13:13:49,446 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7074314252/log.49499762._000163.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/9/lo
[2026-04-06 15:14:53] 2026-04-06 13:13:49,456 | INFO     | adding to output.list: log.49499762._000163.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/c8/log.49499762._000163.job.log.tg
[2026-04-06 15:14:53] 2026-04-06 13:13:49,457 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-06 15:14:53] 2026-04-06 13:13:49,457 | INFO     | summary of transferred files:
[2026-04-06 15:14:53] 2026-04-06 13:13:49,457 | INFO     |  -- lfn=log.49499762._000163.job.log.tgz.1, status_code=0, status=transferred
[2026-04-06 15:14:53] 2026-04-06 13:13:49,457 | INFO     | stage-out finished correctly
[2026-04-06 15:14:53] 2026-04-06 13:13:50,528 | INFO     | PID=1550262 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-06 15:14:53] 2026-04-06 13:13:51,178 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-06 15:14:53] 2026-04-06 13:13:51,201 | INFO     | monitor loop #95: job 0:7074314252 is in state 'finished'
[2026-04-06 15:14:53] 2026-04-06 13:13:51,204 | INFO     | job 7074314252 has state=finished
[2026-04-06 15:14:53] 2026-04-06 13:13:51,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,204 | INFO     | preparing for final server update for job 7074314252 in state='finished'
[2026-04-06 15:14:53] 2026-04-06 13:13:51,204 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7074314252/jobReport.json
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/9/workernode_map.json
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | this job has now completed (state=finished)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | log transfer has been attempted: DONE
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | job 7074314252 has finished - writing final server update
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1507325/.job.ad'
[2026-04-06 15:14:53] 2026-04-06 13:13:51,206 | INFO     | total number of processed events: 400 (read)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | INFO     | using path: /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7074314252/memory_monitor_summary.json (trf name=prmon)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | INFO     | extracted standard info from prmon json
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | INFO     | extracted standard memory fields from prmon json
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-06 15:14:53] 2026-04-06 13:13:51,221 | INFO     | fitting pss+swap vs Time
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | sum of square deviations: 677222.0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | sum of deviations: 118812140.0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | mean x (centered): 0.0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | mean y: 3175865.230769231
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | intersect: 3175865.230769231
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | chi2: 0.004656291722962292
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | current memory leak: 175.44 B/s (using 13 data points, chi2=0.00)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | could have reported an average CPU frequency of 3631 MHz (4 samples)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | ..............................
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . Timing measurements:
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . get job = 0 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . initial setup = 2 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . payload setup = 3 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . stage-in = 0 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . payload execution = 1183 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . stage-out = 0 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | . log creation = 0 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,222 | INFO     | ..............................
[2026-04-06 15:14:53] 2026-04-06 13:13:51,258 | INFO     | 
[2026-04-06 15:14:53] 2026-04-06 13:13:51,258 | INFO     | job summary report
[2026-04-06 15:14:53] 2026-04-06 13:13:51,258 | INFO     | --------------------------------------------------
[2026-04-06 15:14:53] 2026-04-06 13:13:51,258 | INFO     | PanDA job id: 7074314252
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | task id: 49499762
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | errors: (none)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | pilot state: finished 
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | transexitcode: 0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | exeerrorcode: 0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | exeerrordiag: 
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | exitcode: 0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | exitmsg: OK
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | cpuconsumptiontime: 12362 s
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | nevents: 400
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | neventsw: 0
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | pid: 1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | pgrp: 1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | corecount: 12
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | event service: False
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | sizes: {0: 2281608, 10: 2281608, 1191: 2306208, 1192: 2315256, 1194: 2315506}
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | --------------------------------------------------
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | 
[2026-04-06 15:14:53] 2026-04-06 13:13:51,259 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/9
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | job 7074314252 has completed (purged errors)
[2026-04-06 15:14:53] 2026-04-06 13:13:51,272 | INFO     | overall cleanup function is called
[2026-04-06 15:14:53] 2026-04-06 13:13:52,278 | INFO     | --- collectZombieJob: --- 10, [1555958]
[2026-04-06 15:14:53] 2026-04-06 13:13:52,279 | INFO     | zombie collector waiting for pid 1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:52,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-06 15:14:53] 2026-04-06 13:13:52,279 | INFO     | collected zombie processes
[2026-04-06 15:14:53] 2026-04-06 13:13:52,279 | INFO     | will attempt to kill all subprocesses of pid=1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:52,449 | INFO     | process IDs to be killed: [1555958] (in reverse order)
[2026-04-06 15:14:53] 2026-04-06 13:13:52,528 | WARNING  | found no corresponding commands to process id(s)
[2026-04-06 15:14:53] 2026-04-06 13:13:52,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-06 15:14:53] 2026-04-06 13:13:52,544 | INFO     | did not find any defunct processes belonging to 1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:52,555 | INFO     | did not find any defunct processes belonging to 1555958
[2026-04-06 15:14:53] 2026-04-06 13:13:52,555 | INFO     | Ready for new job
[2026-04-06 15:14:53] 2026-04-06 13:13:52,556 | INFO     | **************************************
[2026-04-06 15:14:53] 2026-04-06 13:13:52,556 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-04-06 15:14:53] 2026-04-06 13:13:52,556 | INFO     | **************************************
[2026-04-06 15:14:53] 2026-04-06 13:13:52,556 | INFO     | 
[2026-04-06 15:14:53] 2026-04-06 13:13:52,559 | INFO     | architecture information:
[2026-04-06 15:14:53] 2026-04-06 13:13:52,559 | INFO     | executing command: cat /etc/os-release
[2026-04-06 15:14:53] 2026-04-06 13:13:52,568 | INFO     | cat /etc/os-release:
[2026-04-06 15:14:53] NAME="CentOS Linux"
[2026-04-06 15:14:53] VERSION="7 (Core)"
[2026-04-06 15:14:53] ID="centos"
[2026-04-06 15:14:53] ID_LIKE="rhel fedora"
[2026-04-06 15:14:53] VERSION_ID="7"
[2026-04-06 15:14:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-06 15:14:53] ANSI_COLOR="0;31"
[2026-04-06 15:14:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-06 15:14:53] HOME_URL="https://www.centos.org/"
[2026-04-06 15:14:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-06 15:14:53] 
[2026-04-06 15:14:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-06 15:14:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-06 15:14:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-06 15:14:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-06 15:14:53] 
[2026-04-06 15:14:53] 2026-04-06 13:13:52,568 | INFO     | **************************************
[2026-04-06 15:14:53] 2026-04-06 13:13:53,071 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/9
[2026-04-06 15:14:53] 2026-04-06 13:13:53,081 | INFO     | sufficient remaining disk space (338791759872 B)
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | INFO     | current server update state: UPDATING_FINAL
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | INFO     | update_server=False
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | INFO     | aborting loop
[2026-04-06 15:14:53] 2026-04-06 13:13:53,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-06 15:14:53] 2026-04-06 13:13:53,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-06 15:14:53] 2026-04-06 13:13:53,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-06 15:14:53] 2026-04-06 13:13:53,238 | INFO     | all job control threads have been joined
[2026-04-06 15:14:53] 2026-04-06 13:13:53,661 | INFO     | all data control threads have been joined
[2026-04-06 15:14:53] 2026-04-06 13:13:54,088 | INFO     | [job] retrieve thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,088 | INFO     | [job] job monitor thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,089 | INFO     | [job] queue monitor thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,102 | INFO     | all payload control threads have been joined
[2026-04-06 15:14:53] 2026-04-06 13:13:54,241 | INFO     | [job] control thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,249 | INFO     | [payload] validate_post thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,551 | INFO     | [payload] failed_post thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,584 | INFO     | [job] validate thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,611 | INFO     | [job] create_data_payload thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,639 | INFO     | [payload] validate_pre thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,667 | INFO     | [data] control thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,674 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:54,751 | INFO     | [data] copytool_in thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:55,090 | INFO     | [data] copytool_out thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:55,107 | INFO     | [payload] control thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:55,426 | INFO     | [payload] execute_payloads thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:13:57,090 | INFO     | [data] queue_monitor thread has finished
[2026-04-06 15:14:53] 2026-04-06 13:14:22,875 | INFO     | PID=1550262 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-06 15:14:53] 2026-04-06 13:14:22,875 | INFO     | found 0 job(s) in 20 queues
[2026-04-06 15:14:53] 2026-04-06 13:14:22,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-06 15:14:53] 2026-04-06 13:14:22,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-06 15:14:53] 2026-04-06 13:14:48,205 | INFO     | [monitor] cgroup control has ended
[2026-04-06 15:14:53] 2026-04-06 13:14:48,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23093979490112)>', '<ExcThread(monitor, started 23093740582656)>']
[2026-04-06 15:14:53] 2026-04-06 13:14:49,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-06 15:14:53] 2026-04-06 13:14:49,007 | INFO     | [monitor] control thread has ended
[2026-04-06 15:14:53] 2026-04-06 13:14:53,653 | INFO     | all workflow threads have been joined
[2026-04-06 15:14:53] 2026-04-06 13:14:53,653 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-06 15:14:53] 2026-04-06 13:14:53,653 | INFO     | traces error code: 0
[2026-04-06 15:14:53] 2026-04-06 13:14:53,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-06 15:14:53] 2026-04-06 13:14:53,727 [wrapper] ==== pilot stdout END ====
[2026-04-06 15:14:53] 2026-04-06 13:14:53,729 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-06 15:14:53] 2026-04-06 13:14:53,730 [wrapper] pilotpid: 1550262
[2026-04-06 15:14:53] 2026-04-06 13:14:53,732 [wrapper] Pilot exit status: 0
[2026-04-06 15:14:53] 2026-04-06 13:14:53,738 [wrapper] pandaids: 7074314252
[2026-04-06 15:14:53] 2026-04-06 13:14:53,798 [wrapper] cleanup supervisor_pilot 1582498 1550263
[2026-04-06 15:14:53] 2026-04-06 13:14:53,799 [wrapper] Test setup, not cleaning
[2026-04-06 15:14:53] 2026-04-06 13:14:53,800 [wrapper] apfmon messages muted
[2026-04-06 15:14:53] 2026-04-06 13:14:53,802 [wrapper] ==== wrapper stdout END ====
[2026-04-06 15:14:53] 2026-04-06 13:14:53,804 [wrapper] ==== wrapper stderr END ====
[2026-04-06 15:14:53]  *** Error codes and diagnostics ***
[2026-04-06 15:14:53]     "exeErrorCode": 0,
[2026-04-06 15:14:53]     "pilotErrorCode": 0,
[2026-04-06 15:14:53]  *** Listing of results directory ***
[2026-04-06 15:14:53] total 445364
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc    644034 Mar 30 17:50 pilot3.tar.gz
[2026-04-06 15:14:53] -rwx------. 1 boinc boinc     36322 Mar 30 17:53 runpilot2-wrapper.sh
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc      5118 Mar 30 17:55 queuedata.json
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc       100 Apr  6 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-06 15:14:53] -rwxr-xr-x. 1 boinc boinc      7986 Apr  6 14:53 run_atlas
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc       105 Apr  6 14:53 job.xml
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc      6708 Apr  6 14:53 init_data.xml
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc 266582209 Apr  6 14:53 EVNT.49474669._000007.pool.root.1
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc     15845 Apr  6 14:53 start_atlas.sh
[2026-04-06 15:14:53] drwxrwx--x. 2 boinc boinc      4096 Apr  6 14:53 shared
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc    656740 Apr  6 14:53 input.tar.gz
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc         0 Apr  6 14:53 boinc_lockfile
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc      2581 Apr  6 14:53 pandaJob.out
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc   1005404 Apr  6 14:53 agis_schedconf.cvmfs.json
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc   1511579 Apr  6 14:53 agis_ddmendpoints.agis.ALL.json
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc       444 Apr  6 14:53 workernode_map.json
[2026-04-06 15:14:53] drwx------. 5 boinc boinc      4096 Apr  6 14:53 pilot3
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc 184430210 Apr  6 15:13 HITS.49499762._000163.pool.root.1
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc       529 Apr  6 15:13 boinc_task_state.xml
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc      1021 Apr  6 15:13 memory_monitor_summary.json
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc    325954 Apr  6 15:13 log.49499762._000163.job.log.tgz.1
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc      6362 Apr  6 15:13 heartbeat_new.json
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc      6253 Apr  6 15:13 heartbeat.json
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc        95 Apr  6 15:14 pilot_heartbeat.json
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc      8192 Apr  6 15:14 boinc_mmap_file
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc        27 Apr  6 15:14 wrapper_checkpoint.txt
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc      4753 Apr  6 15:14 pilotlog.txt
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc    160372 Apr  6 15:14 log.49499762._000163.job.log.1
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc       357 Apr  6 15:14 output.list
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc       620 Apr  6 15:14 runtime_log
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc    501760 Apr  6 15:14 result.tar.gz
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc      9206 Apr  6 15:14 runtime_log.err
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc       656 Apr  6 15:14 DvjMDm96TR9n9Rq4apOajLDm4fhM0noT9bVoINGKDmr8PKDmQouolm.diag
[2026-04-06 15:14:53] -rw-r--r--. 1 boinc boinc     20889 Apr  6 15:14 stderr.txt
[2026-04-06 15:14:53] HITS file was successfully produced:
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc 184430210 Apr  6 15:13 shared/HITS.pool.root.1
[2026-04-06 15:14:53]  *** Contents of shared directory: ***
[2026-04-06 15:14:53] total 441604
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc 266582209 Apr  6 14:53 ATLAS.root_0
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc     15845 Apr  6 14:53 start_atlas.sh
[2026-04-06 15:14:53] -rw-r--r--. 2 boinc boinc    656740 Apr  6 14:53 input.tar.gz
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc 184430210 Apr  6 15:13 HITS.pool.root.1
[2026-04-06 15:14:53] -rw-------. 1 boinc boinc    501760 Apr  6 15:14 result.tar.gz
15:14:54 (1545414): run_atlas exited; CPU time 12375.543266
15:14:54 (1545414): called boinc_finish(0)

</stderr_txt>
]]>

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