Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:59:17 (1915811): wrapper (7.7.26015): starting
05:59:17 (1915811): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 05:59:17] Arguments: --nthreads 2
[2026-03-31 05:59:17] Threads: 2
[2026-03-31 05:59:17] Checking for CVMFS
[2026-03-31 05:59:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 05:59:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 05:59:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 05:59:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 05:59:17] 2.9.2.0 1552346 4059 56060 157906 2 50 30394563 36864000 0 130560 0 1385409 99.980 156095 15578 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 05:59:17] CVMFS is ok
[2026-03-31 05:59:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 05:59:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 05:59:17] Further information can be found at the LHC@home message board.
[2026-03-31 05:59:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 05:59:17] Checking for apptainer binary...
[2026-03-31 05:59:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 05:59:17] Running /usr/bin/apptainer --version
[2026-03-31 05:59:17] apptainer version 1.4.1-1.1
[2026-03-31 05:59:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 05:59:17] thA337
[2026-03-31 05:59:17] apptainer works
[2026-03-31 05:59:18] Set ATHENA_PROC_NUMBER=2
[2026-03-31 05:59:18] Set ATHENA_CORE_NUMBER=2
[2026-03-31 05:59:18] Starting ATLAS job with PandaID=7074299630
[2026-03-31 05:59:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 08:15:55]  *** The last 200 lines of the pilot log: ***
[2026-03-31 08:15:55] 2026-03-31 06:14:59,321 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,323 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 08:15:55] 2026-03-31 06:14:59,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,324 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 08:15:55] 2026-03-31 06:14:59,324 | INFO     | job 7074299630 has completed (purged errors)
[2026-03-31 08:15:55] 2026-03-31 06:14:59,324 | INFO     | overall cleanup function is called
[2026-03-31 08:15:55] 2026-03-31 06:15:00,330 | INFO     | --- collectZombieJob: --- 10, [1924257]
[2026-03-31 08:15:55] 2026-03-31 06:15:00,330 | INFO     | zombie collector waiting for pid 1924257
[2026-03-31 08:15:55] 2026-03-31 06:15:00,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 08:15:55] 2026-03-31 06:15:00,330 | INFO     | collected zombie processes
[2026-03-31 08:15:55] 2026-03-31 06:15:00,330 | INFO     | will attempt to kill all subprocesses of pid=1924257
[2026-03-31 08:15:55] 2026-03-31 06:15:00,358 | INFO     | process IDs to be killed: [1924257] (in reverse order)
[2026-03-31 08:15:55] 2026-03-31 06:15:00,380 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 08:15:55] 2026-03-31 06:15:00,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 08:15:55] 2026-03-31 06:15:00,380 | INFO     | did not find any defunct processes belonging to 1924257
[2026-03-31 08:15:55] 2026-03-31 06:15:00,381 | INFO     | did not find any defunct processes belonging to 1924257
[2026-03-31 08:15:55] 2026-03-31 06:15:00,381 | INFO     | Ready for new job
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | **************************************
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | **************************************
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | 
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | architecture information:
[2026-03-31 08:15:55] 2026-03-31 06:15:00,382 | INFO     | executing command: cat /etc/os-release
[2026-03-31 08:15:55] 2026-03-31 06:15:00,391 | INFO     | cat /etc/os-release:
[2026-03-31 08:15:55] NAME="CentOS Linux"
[2026-03-31 08:15:55] VERSION="7 (Core)"
[2026-03-31 08:15:55] ID="centos"
[2026-03-31 08:15:55] ID_LIKE="rhel fedora"
[2026-03-31 08:15:55] VERSION_ID="7"
[2026-03-31 08:15:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 08:15:55] ANSI_COLOR="0;31"
[2026-03-31 08:15:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 08:15:55] HOME_URL="https://www.centos.org/"
[2026-03-31 08:15:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 08:15:55] 
[2026-03-31 08:15:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 08:15:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 08:15:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 08:15:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 08:15:55] 
[2026-03-31 08:15:55] 2026-03-31 06:15:00,391 | INFO     | **************************************
[2026-03-31 08:15:55] 2026-03-31 06:15:00,895 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 08:15:55] 2026-03-31 06:15:00,907 | INFO     | sufficient remaining disk space (480763707392 B)
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | INFO     | update_server=False
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 08:15:55] 2026-03-31 06:15:00,908 | INFO     | aborting loop
[2026-03-31 08:15:55] 2026-03-31 06:15:01,230 | INFO     | all job control threads have been joined
[2026-03-31 08:15:55] 2026-03-31 06:15:01,555 | INFO     | all payload control threads have been joined
[2026-03-31 08:15:55] 2026-03-31 06:15:01,914 | INFO     | [job] retrieve thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:01,914 | INFO     | [job] queue monitor thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:01,915 | INFO     | [job] job monitor thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:01,942 | INFO     | all data control threads have been joined
[2026-03-31 08:15:55] 2026-03-31 06:15:02,121 | INFO     | [payload] validate_post thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:02,236 | INFO     | [job] control thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:02,561 | INFO     | [payload] control thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:02,914 | INFO     | [data] copytool_out thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:02,948 | INFO     | [data] control thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,007 | INFO     | [payload] failed_post thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,141 | INFO     | [job] validate thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,184 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,185 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,296 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:03,385 | INFO     | [data] copytool_in thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:04,915 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:11,544 | INFO     | job.realtimelogging is not enabled
[2026-03-31 08:15:55] 2026-03-31 06:15:12,550 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 08:15:55] 2026-03-31 06:15:31,413 | INFO     | PID=1919844 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 08:15:55] 2026-03-31 06:15:31,413 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 08:15:55] 2026-03-31 06:15:31,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 08:15:55] 2026-03-31 06:15:31,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 08:15:55] 2026-03-31 06:15:49,232 | INFO     | [monitor] cgroup control has ended
[2026-03-31 08:15:55] 2026-03-31 06:15:50,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140167136319296)>', '<ExcThread(monitor, started 140166484174592)>']
[2026-03-31 08:15:55] 2026-03-31 06:15:50,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 08:15:55] 2026-03-31 06:15:50,506 | INFO     | [monitor] control thread has ended
[2026-03-31 08:15:55] 2026-03-31 06:15:55,524 | INFO     | all workflow threads have been joined
[2026-03-31 08:15:55] 2026-03-31 06:15:55,524 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 08:15:55] 2026-03-31 06:15:55,524 | INFO     | traces error code: 0
[2026-03-31 08:15:55] 2026-03-31 06:15:55,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 08:15:55] 2026-03-31 06:15:55,567 [wrapper] ==== pilot stdout END ====
[2026-03-31 08:15:55] 2026-03-31 06:15:55,570 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 08:15:55] 2026-03-31 06:15:55,572 [wrapper] pilotpid: 1919844
[2026-03-31 08:15:55] 2026-03-31 06:15:55,574 [wrapper] Pilot exit status: 0
[2026-03-31 08:15:55] 2026-03-31 06:15:55,581 [wrapper] pandaids: 7074299630
[2026-03-31 08:15:55] 2026-03-31 06:15:55,594 [wrapper] cleanup supervisor_pilot 1929849 1919845
[2026-03-31 08:15:55] 2026-03-31 06:15:55,596 [wrapper] Test setup, not cleaning
[2026-03-31 08:15:55] 2026-03-31 06:15:55,599 [wrapper] apfmon messages muted
[2026-03-31 08:15:55] 2026-03-31 06:15:55,601 [wrapper] ==== wrapper stdout END ====
[2026-03-31 08:15:55] 2026-03-31 06:15:55,603 [wrapper] ==== wrapper stderr END ====
[2026-03-31 08:15:55]  *** Error codes and diagnostics ***
[2026-03-31 08:15:55]     "exeErrorCode": 0,
[2026-03-31 08:15:55]     "pilotErrorCode": 0,
[2026-03-31 08:15:55]  *** Listing of results directory ***
[2026-03-31 08:15:55] total 442384
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc    644034 Mar 30 17:50 pilot3.tar.gz
[2026-03-31 08:15:55] -rwx------ 1 boinc boinc     36322 Mar 30 17:53 runpilot2-wrapper.sh
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc      5118 Mar 30 17:55 queuedata.json
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc       100 Mar 31 05:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 08:15:55] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 05:59 run_atlas
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc       105 Mar 31 05:59 job.xml
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc 262616537 Mar 31 05:59 EVNT.49474453._000005.pool.root.1
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc    656745 Mar 31 05:59 input.tar.gz
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc     15845 Mar 31 05:59 start_atlas.sh
[2026-03-31 08:15:55] drwxrwx--x 2 boinc boinc      4096 Mar 31 05:59 shared
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc         0 Mar 31 05:59 boinc_setup_complete
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc      6205 Mar 31 05:59 init_data.xml
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc         0 Mar 31 05:59 boinc_lockfile
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc      2588 Mar 31 05:59 pandaJob.out
[2026-03-31 08:15:55] -rw------- 1 boinc boinc   1004000 Mar 31 05:59 agis_schedconf.cvmfs.json
[2026-03-31 08:15:55] -rw------- 1 boinc boinc   1511579 Mar 31 05:59 agis_ddmendpoints.agis.ALL.json
[2026-03-31 08:15:55] -rw------- 1 boinc boinc       425 Mar 31 05:59 workernode_map.json
[2026-03-31 08:15:55] drwx------ 5 boinc boinc      4096 Mar 31 05:59 pilot3
[2026-03-31 08:15:55] -rw------- 1 boinc boinc 184289795 Mar 31 08:14 HITS.49499669._000118.pool.root.1
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc       529 Mar 31 08:14 boinc_task_state.xml
[2026-03-31 08:15:55] -rw------- 1 boinc boinc      1011 Mar 31 08:14 memory_monitor_summary.json
[2026-03-31 08:15:55] -rw------- 1 boinc boinc    248075 Mar 31 08:14 log.49499669._000118.job.log.tgz.1
[2026-03-31 08:15:55] -rw------- 1 boinc boinc      6301 Mar 31 08:14 heartbeat_new.json
[2026-03-31 08:15:55] -rw------- 1 boinc boinc      6192 Mar 31 08:14 heartbeat.json
[2026-03-31 08:15:55] -rw------- 1 boinc boinc        95 Mar 31 08:15 pilot_heartbeat.json
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc      8192 Mar 31 08:15 boinc_mmap_file
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc        27 Mar 31 08:15 wrapper_checkpoint.txt
[2026-03-31 08:15:55] -rw------- 1 boinc boinc      4819 Mar 31 08:15 pilotlog.txt
[2026-03-31 08:15:55] -rw------- 1 boinc boinc    768575 Mar 31 08:15 log.49499669._000118.job.log.1
[2026-03-31 08:15:55] -rw------- 1 boinc boinc       357 Mar 31 08:15 output.list
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc       620 Mar 31 08:15 runtime_log
[2026-03-31 08:15:55] -rw------- 1 boinc boinc   1034240 Mar 31 08:15 result.tar.gz
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc      8896 Mar 31 08:15 runtime_log.err
[2026-03-31 08:15:55] -rw------- 1 boinc boinc       658 Mar 31 08:15 M8LLDmv6TR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmq8NKDmcZ4GFn.diag
[2026-03-31 08:15:55] -rw-r--r-- 1 boinc boinc     12422 Mar 31 08:15 stderr.txt
[2026-03-31 08:15:55] HITS file was successfully produced:
[2026-03-31 08:15:55] -rw------- 1 boinc boinc 184289795 Mar 31 08:14 shared/HITS.pool.root.1
[2026-03-31 08:15:55]  *** Contents of shared directory: ***
[2026-03-31 08:15:55] total 438116
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc 262616537 Mar 31 05:59 ATLAS.root_0
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc    656745 Mar 31 05:59 input.tar.gz
[2026-03-31 08:15:55] -rw-r--r-- 2 boinc boinc     15845 Mar 31 05:59 start_atlas.sh
[2026-03-31 08:15:55] -rw------- 1 boinc boinc 184289795 Mar 31 08:14 HITS.pool.root.1
[2026-03-31 08:15:55] -rw------- 1 boinc boinc   1034240 Mar 31 08:15 result.tar.gz
08:15:56 (1915811): run_atlas exited; CPU time 15603.142960
08:15:56 (1915811): called boinc_finish(0)

</stderr_txt>
]]>

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