Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:01 (76766): wrapper (7.7.26015): starting
20:07:01 (76766): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 20:07:01] Arguments: --nthreads 4
[2026-03-30 20:07:01] Threads: 4
[2026-03-30 20:07:01] Checking for CVMFS
[2026-03-30 20:07:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 20:07:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 20:07:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 20:07:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 20:07:01] 2.9.2.0 6139 260 65196 157891 4 1 18559500 36864000 0 130560 0 271640 99.986 13882 10904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 20:07:01] CVMFS is ok
[2026-03-30 20:07:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 20:07:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 20:07:01] Further information can be found at the LHC@home message board.
[2026-03-30 20:07:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 20:07:01] Checking for apptainer binary...
[2026-03-30 20:07:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 20:07:01] Running /usr/bin/apptainer --version
[2026-03-30 20:07:01] apptainer version 1.4.1-1.1
[2026-03-30 20:07:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 20:07:01] thA373a
[2026-03-30 20:07:01] apptainer works
[2026-03-30 20:07:01] Set ATHENA_PROC_NUMBER=4
[2026-03-30 20:07:01] Set ATHENA_CORE_NUMBER=4
[2026-03-30 20:07:01] Starting ATLAS job with PandaID=7074244128
[2026-03-30 20:07:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 05:16:12]  *** The last 200 lines of the pilot log: ***
[2026-03-31 05:16:12] 2026-03-31 03:15:40,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 05:16:12] 2026-03-31 03:15:40,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 05:16:12] 2026-03-31 03:15:40,443 | INFO     | job 7074244128 has completed (purged errors)
[2026-03-31 05:16:12] 2026-03-31 03:15:40,443 | INFO     | overall cleanup function is called
[2026-03-31 05:16:12] 2026-03-31 03:15:41,453 | INFO     | --- collectZombieJob: --- 10, [86068]
[2026-03-31 05:16:12] 2026-03-31 03:15:41,454 | INFO     | zombie collector waiting for pid 86068
[2026-03-31 05:16:12] 2026-03-31 03:15:41,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 05:16:12] 2026-03-31 03:15:41,454 | INFO     | collected zombie processes
[2026-03-31 05:16:12] 2026-03-31 03:15:41,454 | INFO     | will attempt to kill all subprocesses of pid=86068
[2026-03-31 05:16:12] 2026-03-31 03:15:41,504 | INFO     | process IDs to be killed: [86068] (in reverse order)
[2026-03-31 05:16:12] 2026-03-31 03:15:41,540 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 05:16:12] 2026-03-31 03:15:41,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 05:16:12] 2026-03-31 03:15:41,542 | INFO     | did not find any defunct processes belonging to 86068
[2026-03-31 05:16:12] 2026-03-31 03:15:41,543 | INFO     | did not find any defunct processes belonging to 86068
[2026-03-31 05:16:12] 2026-03-31 03:15:41,544 | INFO     | Ready for new job
[2026-03-31 05:16:12] 2026-03-31 03:15:41,545 | INFO     | **************************************
[2026-03-31 05:16:12] 2026-03-31 03:15:41,545 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 05:16:12] 2026-03-31 03:15:41,545 | INFO     | **************************************
[2026-03-31 05:16:12] 2026-03-31 03:15:41,545 | INFO     | 
[2026-03-31 05:16:12] 2026-03-31 03:15:41,545 | INFO     | architecture information:
[2026-03-31 05:16:12] 2026-03-31 03:15:41,546 | INFO     | executing command: cat /etc/os-release
[2026-03-31 05:16:12] 2026-03-31 03:15:41,561 | INFO     | cat /etc/os-release:
[2026-03-31 05:16:12] NAME="CentOS Linux"
[2026-03-31 05:16:12] VERSION="7 (Core)"
[2026-03-31 05:16:12] ID="centos"
[2026-03-31 05:16:12] ID_LIKE="rhel fedora"
[2026-03-31 05:16:12] VERSION_ID="7"
[2026-03-31 05:16:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 05:16:12] ANSI_COLOR="0;31"
[2026-03-31 05:16:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 05:16:12] HOME_URL="https://www.centos.org/"
[2026-03-31 05:16:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 05:16:12] 
[2026-03-31 05:16:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 05:16:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 05:16:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 05:16:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 05:16:12] 
[2026-03-31 05:16:12] 2026-03-31 03:15:41,561 | INFO     | **************************************
[2026-03-31 05:16:12] 2026-03-31 03:15:42,064 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | INFO     | sufficient remaining disk space (340701216768 B)
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | INFO     | update_server=False
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 05:16:12] 2026-03-31 03:15:42,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 05:16:12] 2026-03-31 03:15:42,500 | INFO     | all payload control threads have been joined
[2026-03-31 05:16:12] 2026-03-31 03:15:42,646 | WARNING  | process 86068 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 05:16:12] 2026-03-31 03:15:42,661 | INFO     | all job control threads have been joined
[2026-03-31 05:16:12] 2026-03-31 03:15:42,683 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 05:16:12] 2026-03-31 03:15:42,729 | INFO     | number of running child processes to parent process 86068: 1
[2026-03-31 05:16:12] 2026-03-31 03:15:42,729 | INFO     | maximum number of monitored processes: 10
[2026-03-31 05:16:12] 2026-03-31 03:15:42,729 | INFO     | aborting job monitoring since job object (job id=7074244128) has expired
[2026-03-31 05:16:12] 2026-03-31 03:15:42,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 05:16:12] 2026-03-31 03:15:42,730 | INFO     | will abort loop
[2026-03-31 05:16:12] 2026-03-31 03:15:42,748 | INFO     | all data control threads have been joined
[2026-03-31 05:16:12] 2026-03-31 03:15:43,087 | INFO     | [job] retrieve thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,087 | INFO     | [job] queue monitor thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,432 | INFO     | [payload] failed_post thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,497 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,505 | INFO     | [payload] control thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,516 | INFO     | [payload] validate_post thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,666 | INFO     | [job] control thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,735 | INFO     | [job] job monitor thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,753 | INFO     | [data] control thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:43,896 | INFO     | [job] validate thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:44,048 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:44,083 | INFO     | [data] copytool_out thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:44,301 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:44,335 | INFO     | [data] copytool_in thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:44,584 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:46,089 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 05:16:12] 2026-03-31 03:15:56,431 | INFO     | [monitor] cgroup control has ended
[2026-03-31 05:16:12] 2026-03-31 03:15:58,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419169728320)>', '<ExcThread(monitor, started 140418301810432)>']
[2026-03-31 05:16:12] 2026-03-31 03:16:03,463 | INFO     | all workflow threads have been joined
[2026-03-31 05:16:12] 2026-03-31 03:16:03,463 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 05:16:12] 2026-03-31 03:16:03,463 | INFO     | traces error code: 0
[2026-03-31 05:16:12] 2026-03-31 03:16:03,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | INFO     | PID=80888 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 05:16:12] 2026-03-31 03:16:12,036 | INFO     | [monitor] control thread has ended
[2026-03-31 05:16:12] 2026-03-31 03:16:12,139 [wrapper] ==== pilot stdout END ====
[2026-03-31 05:16:12] 2026-03-31 03:16:12,143 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 05:16:12] 2026-03-31 03:16:12,147 [wrapper] pilotpid: 80888
[2026-03-31 05:16:12] 2026-03-31 03:16:12,150 [wrapper] Pilot exit status: 0
[2026-03-31 05:16:12] 2026-03-31 03:16:12,162 [wrapper] pandaids: 7074244128
[2026-03-31 05:16:12] 2026-03-31 03:16:12,185 [wrapper] cleanup supervisor_pilot  103361 80889
[2026-03-31 05:16:12] 2026-03-31 03:16:12,189 [wrapper] Test setup, not cleaning
[2026-03-31 05:16:12] 2026-03-31 03:16:12,193 [wrapper] apfmon messages muted
[2026-03-31 05:16:12] 2026-03-31 03:16:12,197 [wrapper] ==== wrapper stdout END ====
[2026-03-31 05:16:12] 2026-03-31 03:16:12,200 [wrapper] ==== wrapper stderr END ====
[2026-03-31 05:16:12]  *** Error codes and diagnostics ***
[2026-03-31 05:16:12]     "exeErrorCode": 0,
[2026-03-31 05:16:12]     "pilotErrorCode": 0,
[2026-03-31 05:16:12]  *** Listing of results directory ***
[2026-03-31 05:16:12] total 1550036
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc     644034 Mar 30 16:53 pilot3.tar.gz
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc       5118 Mar 30 16:56 queuedata.json
[2026-03-31 05:16:12] -rwx------ 1 boinc boinc      36322 Mar 30 16:56 runpilot2-wrapper.sh
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc        100 Mar 30 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 05:16:12] -rwxr-xr-x 1 boinc boinc       7986 Mar 30 20:07 run_atlas
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc        105 Mar 30 20:07 job.xml
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc  328682058 Mar 30 20:07 EVNT.16681268._000010.pool.root.1
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc     656932 Mar 30 20:07 input.tar.gz
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc      15845 Mar 30 20:07 start_atlas.sh
[2026-03-31 05:16:12] drwxrwx--x 2 boinc boinc       4096 Mar 30 20:07 shared
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc          0 Mar 30 20:07 boinc_setup_complete
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc       6377 Mar 30 20:07 init_data.xml
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc          0 Mar 30 20:07 boinc_lockfile
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc       2872 Mar 30 20:07 pandaJob.out
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    1004374 Mar 30 20:07 agis_schedconf.cvmfs.json
[2026-03-31 05:16:12] -rw------- 1 boinc boinc        422 Mar 30 20:07 workernode_map.json
[2026-03-31 05:16:12] drwx------ 5 boinc boinc       4096 Mar 30 20:07 pilot3
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc        532 Mar 31 05:10 boinc_task_state.xml
[2026-03-31 05:16:12] -rw------- 1 boinc boinc         95 Mar 31 05:15 pilot_heartbeat.json
[2026-03-31 05:16:12] -rw------- 1 boinc boinc 1245534857 Mar 31 05:15 HITS.49496535._000047.pool.root.1
[2026-03-31 05:16:12] -rw------- 1 boinc boinc       1031 Mar 31 05:15 memory_monitor_summary.json
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    1511579 Mar 31 05:15 agis_ddmendpoints.agis.ALL.json
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    1453057 Mar 31 05:15 log.49496535._000047.job.log.tgz.1
[2026-03-31 05:16:12] -rw------- 1 boinc boinc      21522 Mar 31 05:15 heartbeat_new.json
[2026-03-31 05:16:12] -rw------- 1 boinc boinc      21413 Mar 31 05:15 heartbeat.json
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc       8192 Mar 31 05:15 boinc_mmap_file
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc         29 Mar 31 05:15 wrapper_checkpoint.txt
[2026-03-31 05:16:12] -rw------- 1 boinc boinc        745 Mar 31 05:16 pilotlog.txt
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    3005946 Mar 31 05:16 log.49496535._000047.job.log.1
[2026-03-31 05:16:12] -rw------- 1 boinc boinc        353 Mar 31 05:16 output.list
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc        620 Mar 31 05:16 runtime_log
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    4495360 Mar 31 05:16 result.tar.gz
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc       8902 Mar 31 05:16 runtime_log.err
[2026-03-31 05:16:12] -rw------- 1 boinc boinc        668 Mar 31 05:16 a3kKDmxDTR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmgtNKDm38pvum.diag
[2026-03-31 05:16:12] -rw-r--r-- 1 boinc boinc      11401 Mar 31 05:16 stderr.txt
[2026-03-31 05:16:12] HITS file was successfully produced:
[2026-03-31 05:16:12] -rw------- 1 boinc boinc 1245534857 Mar 31 05:15 shared/HITS.pool.root.1
[2026-03-31 05:16:12]  *** Contents of shared directory: ***
[2026-03-31 05:16:12] total 1542384
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc  328682058 Mar 30 20:07 ATLAS.root_0
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc     656932 Mar 30 20:07 input.tar.gz
[2026-03-31 05:16:12] -rw-r--r-- 2 boinc boinc      15845 Mar 30 20:07 start_atlas.sh
[2026-03-31 05:16:12] -rw------- 1 boinc boinc 1245534857 Mar 31 05:15 HITS.pool.root.1
[2026-03-31 05:16:12] -rw------- 1 boinc boinc    4495360 Mar 31 05:16 result.tar.gz
05:16:13 (76766): run_atlas exited; CPU time 128183.486354
05:16:13 (76766): called boinc_finish(0)

</stderr_txt>
]]>

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