Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:13 (3557873): wrapper (7.7.26015): starting
00:58:13 (3557873): wrapper: running run_atlas (--nthreads 2)
[2026-03-31 00:58:13] Arguments: --nthreads 2
[2026-03-31 00:58:13] Threads: 2
[2026-03-31 00:58:13] Checking for CVMFS
[2026-03-31 00:58:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-31 00:58:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-31 00:58:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-31 00:58:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-31 00:58:13] 2.9.2.0 3201293 4515 57500 157899 1 50 19451479 36864001 0 130560 0 1412251 99.978 167852 15500 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-31 00:58:13] CVMFS is ok
[2026-03-31 00:58:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-31 00:58:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-31 00:58:13] Further information can be found at the LHC@home message board.
[2026-03-31 00:58:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-31 00:58:13] Checking for apptainer binary...
[2026-03-31 00:58:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-31 00:58:13] Running /usr/bin/apptainer --version
[2026-03-31 00:58:13] apptainer version 1.4.1-1.1
[2026-03-31 00:58:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-31 00:58:13] magicA244
[2026-03-31 00:58:13] apptainer works
[2026-03-31 00:58:13] Set ATHENA_PROC_NUMBER=2
[2026-03-31 00:58:13] Set ATHENA_CORE_NUMBER=2
[2026-03-31 00:58:13] Starting ATLAS job with PandaID=7074219285
[2026-03-31 00:58:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 03:22:40]  *** The last 200 lines of the pilot log: ***
[2026-03-31 03:22:40] 2026-03-31 01:22:05,840 | INFO     | --- collectZombieJob: --- 10, [3566306]
[2026-03-31 03:22:40] 2026-03-31 01:22:05,840 | INFO     | zombie collector waiting for pid 3566306
[2026-03-31 03:22:40] 2026-03-31 01:22:05,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 03:22:40] 2026-03-31 01:22:05,840 | INFO     | collected zombie processes
[2026-03-31 03:22:40] 2026-03-31 01:22:05,840 | INFO     | will attempt to kill all subprocesses of pid=3566306
[2026-03-31 03:22:40] 2026-03-31 01:22:05,868 | INFO     | process IDs to be killed: [3566306] (in reverse order)
[2026-03-31 03:22:40] 2026-03-31 01:22:05,891 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 03:22:40] 2026-03-31 01:22:05,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 03:22:40] 2026-03-31 01:22:05,892 | INFO     | did not find any defunct processes belonging to 3566306
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | did not find any defunct processes belonging to 3566306
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | Ready for new job
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | **************************************
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | **************************************
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | 
[2026-03-31 03:22:40] 2026-03-31 01:22:05,893 | INFO     | architecture information:
[2026-03-31 03:22:40] 2026-03-31 01:22:05,894 | INFO     | executing command: cat /etc/os-release
[2026-03-31 03:22:40] 2026-03-31 01:22:05,902 | INFO     | cat /etc/os-release:
[2026-03-31 03:22:40] NAME="CentOS Linux"
[2026-03-31 03:22:40] VERSION="7 (Core)"
[2026-03-31 03:22:40] ID="centos"
[2026-03-31 03:22:40] ID_LIKE="rhel fedora"
[2026-03-31 03:22:40] VERSION_ID="7"
[2026-03-31 03:22:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 03:22:40] ANSI_COLOR="0;31"
[2026-03-31 03:22:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 03:22:40] HOME_URL="https://www.centos.org/"
[2026-03-31 03:22:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 03:22:40] 
[2026-03-31 03:22:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 03:22:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 03:22:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 03:22:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 03:22:40] 
[2026-03-31 03:22:40] 2026-03-31 01:22:05,902 | INFO     | **************************************
[2026-03-31 03:22:40] 2026-03-31 01:22:06,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | INFO     | sufficient remaining disk space (504602034176 B)
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | INFO     | update_server=False
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 03:22:40] 2026-03-31 01:22:06,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 03:22:40] 2026-03-31 01:22:06,801 | INFO     | all payload control threads have been joined
[2026-03-31 03:22:40] 2026-03-31 01:22:06,885 | INFO     | all job control threads have been joined
[2026-03-31 03:22:40] 2026-03-31 01:22:06,904 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-31 03:22:40] 2026-03-31 01:22:06,904 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-31 03:22:40] 2026-03-31 01:22:06,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 03:22:40] 2026-03-31 01:22:06,904 | INFO     | will abort loop
[2026-03-31 03:22:40] 2026-03-31 01:22:07,228 | INFO     | all data control threads have been joined
[2026-03-31 03:22:40] 2026-03-31 01:22:07,419 | INFO     | [job] retrieve thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:07,419 | INFO     | [job] queue monitor thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:07,807 | INFO     | [payload] control thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:07,890 | INFO     | [job] control thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:07,904 | INFO     | [job] validate thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:07,909 | INFO     | [job] job monitor thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,062 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,177 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,224 | INFO     | [payload] failed_post thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,233 | INFO     | [data] control thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,269 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,351 | INFO     | [data] copytool_in thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,398 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,419 | INFO     | [data] copytool_out thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:08,799 | INFO     | [payload] validate_post thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:10,419 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 03:22:40] 2026-03-31 01:22:35,585 | INFO     | [monitor] cgroup control has ended
[2026-03-31 03:22:40] 2026-03-31 01:22:35,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358622984000)>', '<ExcThread(monitor, started 140357316638464)>']
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | INFO     | PID=3561896 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 03:22:40] 2026-03-31 01:22:36,570 | INFO     | [monitor] control thread has ended
[2026-03-31 03:22:40] 2026-03-31 01:22:40,740 | INFO     | all workflow threads have been joined
[2026-03-31 03:22:40] 2026-03-31 01:22:40,740 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 03:22:40] 2026-03-31 01:22:40,741 | INFO     | traces error code: 0
[2026-03-31 03:22:40] 2026-03-31 01:22:40,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 03:22:40] 2026-03-31 01:22:40,786 [wrapper] ==== pilot stdout END ====
[2026-03-31 03:22:40] 2026-03-31 01:22:40,789 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 03:22:40] 2026-03-31 01:22:40,792 [wrapper] pilotpid: 3561896
[2026-03-31 03:22:40] 2026-03-31 01:22:40,795 [wrapper] Pilot exit status: 0
[2026-03-31 03:22:40] 2026-03-31 01:22:40,801 [wrapper] pandaids: 7074219285
[2026-03-31 03:22:40] 2026-03-31 01:22:40,814 [wrapper] cleanup supervisor_pilot 3571676 3561897
[2026-03-31 03:22:40] 2026-03-31 01:22:40,816 [wrapper] Test setup, not cleaning
[2026-03-31 03:22:40] 2026-03-31 01:22:40,818 [wrapper] apfmon messages muted
[2026-03-31 03:22:40] 2026-03-31 01:22:40,820 [wrapper] ==== wrapper stdout END ====
[2026-03-31 03:22:40] 2026-03-31 01:22:40,822 [wrapper] ==== wrapper stderr END ====
[2026-03-31 03:22:40]  *** Error codes and diagnostics ***
[2026-03-31 03:22:40]     "exeErrorCode": 0,
[2026-03-31 03:22:40]     "pilotErrorCode": 0,
[2026-03-31 03:22:40]  *** Listing of results directory ***
[2026-03-31 03:22:40] total 442392
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc      5118 Mar 30 14:39 queuedata.json
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc    644034 Mar 30 14:39 pilot3.tar.gz
[2026-03-31 03:22:40] -rwx------ 1 boinc boinc     36322 Mar 30 14:40 runpilot2-wrapper.sh
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc       100 Mar 31 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 03:22:40] -rwxr-xr-x 1 boinc boinc      7986 Mar 31 00:58 run_atlas
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc       105 Mar 31 00:58 job.xml
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc 264357183 Mar 31 00:58 EVNT.49474375._000002.pool.root.1
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc    656743 Mar 31 00:58 input.tar.gz
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc     15845 Mar 31 00:58 start_atlas.sh
[2026-03-31 03:22:40] drwxrwx--x 2 boinc boinc      4096 Mar 31 00:58 shared
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc         0 Mar 31 00:58 boinc_setup_complete
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc      6208 Mar 31 00:58 init_data.xml
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc         0 Mar 31 00:58 boinc_lockfile
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc      2584 Mar 31 00:58 pandaJob.out
[2026-03-31 03:22:40] -rw------- 1 boinc boinc   1004000 Mar 31 00:58 agis_schedconf.cvmfs.json
[2026-03-31 03:22:40] -rw------- 1 boinc boinc   1511579 Mar 31 00:58 agis_ddmendpoints.agis.ALL.json
[2026-03-31 03:22:40] -rw------- 1 boinc boinc       422 Mar 31 00:58 workernode_map.json
[2026-03-31 03:22:40] drwx------ 5 boinc boinc      4096 Mar 31 00:58 pilot3
[2026-03-31 03:22:40] -rw------- 1 boinc boinc 182505253 Mar 31 03:21 HITS.49499571._000030.pool.root.1
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc       529 Mar 31 03:21 boinc_task_state.xml
[2026-03-31 03:22:40] -rw------- 1 boinc boinc        95 Mar 31 03:21 pilot_heartbeat.json
[2026-03-31 03:22:40] -rw------- 1 boinc boinc      1015 Mar 31 03:21 memory_monitor_summary.json
[2026-03-31 03:22:40] -rw------- 1 boinc boinc    238711 Mar 31 03:22 log.49499571._000030.job.log.tgz.1
[2026-03-31 03:22:40] -rw------- 1 boinc boinc      6308 Mar 31 03:22 heartbeat_new.json
[2026-03-31 03:22:40] -rw------- 1 boinc boinc      6199 Mar 31 03:22 heartbeat.json
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc      8192 Mar 31 03:22 boinc_mmap_file
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc        27 Mar 31 03:22 wrapper_checkpoint.txt
[2026-03-31 03:22:40] -rw------- 1 boinc boinc      4933 Mar 31 03:22 pilotlog.txt
[2026-03-31 03:22:40] -rw------- 1 boinc boinc    810996 Mar 31 03:22 log.49499571._000030.job.log.1
[2026-03-31 03:22:40] -rw------- 1 boinc boinc       357 Mar 31 03:22 output.list
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc       620 Mar 31 03:22 runtime_log
[2026-03-31 03:22:40] -rw------- 1 boinc boinc   1064960 Mar 31 03:22 result.tar.gz
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc      8911 Mar 31 03:22 runtime_log.err
[2026-03-31 03:22:40] -rw------- 1 boinc boinc       662 Mar 31 03:22 BeCNDmK6QR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmebNKDmcMwlsm.diag
[2026-03-31 03:22:40] -rw-r--r-- 1 boinc boinc     10627 Mar 31 03:22 stderr.txt
[2026-03-31 03:22:40] HITS file was successfully produced:
[2026-03-31 03:22:40] -rw------- 1 boinc boinc 182505253 Mar 31 03:21 shared/HITS.pool.root.1
[2026-03-31 03:22:40]  *** Contents of shared directory: ***
[2026-03-31 03:22:40] total 438096
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc 264357183 Mar 31 00:58 ATLAS.root_0
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc    656743 Mar 31 00:58 input.tar.gz
[2026-03-31 03:22:40] -rw-r--r-- 2 boinc boinc     15845 Mar 31 00:58 start_atlas.sh
[2026-03-31 03:22:40] -rw------- 1 boinc boinc 182505253 Mar 31 03:21 HITS.pool.root.1
[2026-03-31 03:22:40] -rw------- 1 boinc boinc   1064960 Mar 31 03:22 result.tar.gz
03:22:42 (3557873): run_atlas exited; CPU time 16607.954590
03:22:42 (3557873): called boinc_finish(0)

</stderr_txt>
]]>

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