Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:24 (47835): wrapper (7.7.26015): starting
17:26:24 (47835): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 17:26:24] Arguments: --nthreads 4
[2026-03-30 17:26:24] Threads: 4
[2026-03-30 17:26:24] Checking for CVMFS
[2026-03-30 17:26:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 17:26:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 17:26:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 17:26:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 17:26:24] 2.9.2.0 6139 100 59188 157886 0 188 18533697 36864001 0 130560 0 161831 99.980 7100 6913 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 17:26:24] CVMFS is ok
[2026-03-30 17:26:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 17:26:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 17:26:24] Further information can be found at the LHC@home message board.
[2026-03-30 17:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 17:26:24] Checking for apptainer binary...
[2026-03-30 17:26:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 17:26:24] Running /usr/bin/apptainer --version
[2026-03-30 17:26:24] apptainer version 1.4.1-1.1
[2026-03-30 17:26:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 17:26:24] thA373a
[2026-03-30 17:26:24] apptainer works
[2026-03-30 17:26:24] Set ATHENA_PROC_NUMBER=4
[2026-03-30 17:26:24] Set ATHENA_CORE_NUMBER=4
[2026-03-30 17:26:24] Starting ATLAS job with PandaID=7074218840
[2026-03-30 17:26:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 18:44:48]  *** The last 200 lines of the pilot log: ***
[2026-03-30 18:44:48] 2026-03-30 16:44:12,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 18:44:48] 2026-03-30 16:44:12,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 18:44:48] 2026-03-30 16:44:12,923 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 18:44:48] 2026-03-30 16:44:12,923 | INFO     | job 7074218840 has completed (purged errors)
[2026-03-30 18:44:48] 2026-03-30 16:44:12,923 | INFO     | overall cleanup function is called
[2026-03-30 18:44:48] 2026-03-30 16:44:13,930 | INFO     | --- collectZombieJob: --- 10, [56166]
[2026-03-30 18:44:48] 2026-03-30 16:44:13,931 | INFO     | zombie collector waiting for pid 56166
[2026-03-30 18:44:48] 2026-03-30 16:44:13,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 18:44:48] 2026-03-30 16:44:13,931 | INFO     | collected zombie processes
[2026-03-30 18:44:48] 2026-03-30 16:44:13,931 | INFO     | will attempt to kill all subprocesses of pid=56166
[2026-03-30 18:44:48] 2026-03-30 16:44:13,982 | INFO     | process IDs to be killed: [56166] (in reverse order)
[2026-03-30 18:44:48] 2026-03-30 16:44:14,018 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 18:44:48] 2026-03-30 16:44:14,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 18:44:48] 2026-03-30 16:44:14,020 | INFO     | did not find any defunct processes belonging to 56166
[2026-03-30 18:44:48] 2026-03-30 16:44:14,022 | INFO     | did not find any defunct processes belonging to 56166
[2026-03-30 18:44:48] 2026-03-30 16:44:14,022 | INFO     | Ready for new job
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | **************************************
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | ***  PanDA Pilot version 3.12.2.2  ***
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | **************************************
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | 
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | architecture information:
[2026-03-30 18:44:48] 2026-03-30 16:44:14,023 | INFO     | executing command: cat /etc/os-release
[2026-03-30 18:44:48] 2026-03-30 16:44:14,037 | INFO     | cat /etc/os-release:
[2026-03-30 18:44:48] NAME="CentOS Linux"
[2026-03-30 18:44:48] VERSION="7 (Core)"
[2026-03-30 18:44:48] ID="centos"
[2026-03-30 18:44:48] ID_LIKE="rhel fedora"
[2026-03-30 18:44:48] VERSION_ID="7"
[2026-03-30 18:44:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 18:44:48] ANSI_COLOR="0;31"
[2026-03-30 18:44:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 18:44:48] HOME_URL="https://www.centos.org/"
[2026-03-30 18:44:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 18:44:48] 
[2026-03-30 18:44:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 18:44:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 18:44:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 18:44:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 18:44:48] 
[2026-03-30 18:44:48] 2026-03-30 16:44:14,038 | INFO     | **************************************
[2026-03-30 18:44:48] 2026-03-30 16:44:14,541 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | INFO     | sufficient remaining disk space (342986063872 B)
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | INFO     | update_server=False
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:44:48] 2026-03-30 16:44:14,558 | INFO     | aborting loop
[2026-03-30 18:44:48] 2026-03-30 16:44:14,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:44:48] 2026-03-30 16:44:14,765 | INFO     | all job control threads have been joined
[2026-03-30 18:44:48] 2026-03-30 16:44:14,893 | INFO     | all data control threads have been joined
[2026-03-30 18:44:48] 2026-03-30 16:44:15,296 | INFO     | all payload control threads have been joined
[2026-03-30 18:44:48] 2026-03-30 16:44:15,564 | INFO     | [job] retrieve thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,564 | INFO     | [job] job monitor thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,564 | INFO     | [job] queue monitor thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,572 | INFO     | [job] validate thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,638 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 18:44:48] 2026-03-30 16:44:15,698 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,770 | INFO     | [job] control thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,867 | INFO     | [data] copytool_in thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:15,898 | INFO     | [data] control thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:16,064 | INFO     | [payload] validate_post thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:16,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 18:44:48] 2026-03-30 16:44:16,301 | INFO     | [payload] control thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:16,865 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:17,130 | INFO     | [payload] failed_post thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:17,683 | INFO     | [data] copytool_out thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:20,217 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:25,132 | INFO     | job.realtimelogging is not enabled
[2026-03-30 18:44:48] 2026-03-30 16:44:26,138 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 18:44:48] 2026-03-30 16:44:41,746 | INFO     | [monitor] cgroup control has ended
[2026-03-30 18:44:48] 2026-03-30 16:44:43,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716349519680)>', '<ExcThread(monitor, started 139715420354304)>']
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | INFO     | PID=51639 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 18:44:48] 2026-03-30 16:44:45,617 | INFO     | [monitor] control thread has ended
[2026-03-30 18:44:48] 2026-03-30 16:44:48,567 | INFO     | all workflow threads have been joined
[2026-03-30 18:44:48] 2026-03-30 16:44:48,567 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 18:44:48] 2026-03-30 16:44:48,567 | INFO     | traces error code: 0
[2026-03-30 18:44:48] 2026-03-30 16:44:48,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 18:44:48] 2026-03-30 16:44:48,647 [wrapper] ==== pilot stdout END ====
[2026-03-30 18:44:48] 2026-03-30 16:44:48,651 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 18:44:48] 2026-03-30 16:44:48,654 [wrapper] pilotpid: 51639
[2026-03-30 18:44:48] 2026-03-30 16:44:48,658 [wrapper] Pilot exit status: 0
[2026-03-30 18:44:48] 2026-03-30 16:44:48,669 [wrapper] pandaids: 7074218840
[2026-03-30 18:44:48] 2026-03-30 16:44:48,692 [wrapper] cleanup supervisor_pilot   61911 51640
[2026-03-30 18:44:48] 2026-03-30 16:44:48,696 [wrapper] Test setup, not cleaning
[2026-03-30 18:44:48] 2026-03-30 16:44:48,700 [wrapper] apfmon messages muted
[2026-03-30 18:44:48] 2026-03-30 16:44:48,704 [wrapper] ==== wrapper stdout END ====
[2026-03-30 18:44:48] 2026-03-30 16:44:48,708 [wrapper] ==== wrapper stderr END ====
[2026-03-30 18:44:48]  *** Error codes and diagnostics ***
[2026-03-30 18:44:48]     "exeErrorCode": 0,
[2026-03-30 18:44:48]     "pilotErrorCode": 0,
[2026-03-30 18:44:48]  *** Listing of results directory ***
[2026-03-30 18:44:48] total 438868
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc      5118 Mar 30 14:39 queuedata.json
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc    644034 Mar 30 14:39 pilot3.tar.gz
[2026-03-30 18:44:48] -rwx------ 1 boinc boinc     36322 Mar 30 14:40 runpilot2-wrapper.sh
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc       100 Mar 30 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 18:44:48] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 17:26 run_atlas
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc       105 Mar 30 17:26 job.xml
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc 262513768 Mar 30 17:26 EVNT.49474358._000003.pool.root.1
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc    656746 Mar 30 17:26 input.tar.gz
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc     15845 Mar 30 17:26 start_atlas.sh
[2026-03-30 18:44:48] drwxrwx--x 2 boinc boinc      4096 Mar 30 17:26 shared
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc         0 Mar 30 17:26 boinc_setup_complete
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc      6377 Mar 30 17:26 init_data.xml
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc         0 Mar 30 17:26 boinc_lockfile
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc      2582 Mar 30 17:26 pandaJob.out
[2026-03-30 18:44:48] -rw------- 1 boinc boinc   1004330 Mar 30 17:26 agis_schedconf.cvmfs.json
[2026-03-30 18:44:48] -rw------- 1 boinc boinc   1511579 Mar 30 17:26 agis_ddmendpoints.agis.ALL.json
[2026-03-30 18:44:48] -rw------- 1 boinc boinc       428 Mar 30 17:26 workernode_map.json
[2026-03-30 18:44:48] drwx------ 5 boinc boinc      4096 Mar 30 17:26 pilot3
[2026-03-30 18:44:48] -rw------- 1 boinc boinc 181408214 Mar 30 18:43 HITS.49499556._000072.pool.root.1
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc       530 Mar 30 18:43 boinc_task_state.xml
[2026-03-30 18:44:48] -rw------- 1 boinc boinc        95 Mar 30 18:43 pilot_heartbeat.json
[2026-03-30 18:44:48] -rw------- 1 boinc boinc      1017 Mar 30 18:44 memory_monitor_summary.json
[2026-03-30 18:44:48] -rw------- 1 boinc boinc    253091 Mar 30 18:44 log.49499556._000072.job.log.tgz.1
[2026-03-30 18:44:48] -rw------- 1 boinc boinc      6322 Mar 30 18:44 heartbeat_new.json
[2026-03-30 18:44:48] -rw------- 1 boinc boinc      6213 Mar 30 18:44 heartbeat.json
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc        27 Mar 30 18:44 wrapper_checkpoint.txt
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc      8192 Mar 30 18:44 boinc_mmap_file
[2026-03-30 18:44:48] -rw------- 1 boinc boinc      4817 Mar 30 18:44 pilotlog.txt
[2026-03-30 18:44:48] -rw------- 1 boinc boinc    458399 Mar 30 18:44 log.49499556._000072.job.log.1
[2026-03-30 18:44:48] -rw------- 1 boinc boinc       357 Mar 30 18:44 output.list
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc       620 Mar 30 18:44 runtime_log
[2026-03-30 18:44:48] -rw------- 1 boinc boinc    727040 Mar 30 18:44 result.tar.gz
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc      8901 Mar 30 18:44 runtime_log.err
[2026-03-30 18:44:48] -rw------- 1 boinc boinc       658 Mar 30 18:44 HvCMDmJ6QR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmfaNKDmAZpfFn.diag
[2026-03-30 18:44:48] -rw-r--r-- 1 boinc boinc     10959 Mar 30 18:44 stderr.txt
[2026-03-30 18:44:48] HITS file was successfully produced:
[2026-03-30 18:44:48] -rw------- 1 boinc boinc 181408214 Mar 30 18:43 shared/HITS.pool.root.1
[2026-03-30 18:44:48]  *** Contents of shared directory: ***
[2026-03-30 18:44:48] total 434904
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc 262513768 Mar 30 17:26 ATLAS.root_0
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc    656746 Mar 30 17:26 input.tar.gz
[2026-03-30 18:44:48] -rw-r--r-- 2 boinc boinc     15845 Mar 30 17:26 start_atlas.sh
[2026-03-30 18:44:48] -rw------- 1 boinc boinc 181408214 Mar 30 18:43 HITS.pool.root.1
[2026-03-30 18:44:48] -rw------- 1 boinc boinc    727040 Mar 30 18:44 result.tar.gz
18:44:50 (47835): run_atlas exited; CPU time 17218.156399
18:44:50 (47835): called boinc_finish(0)

</stderr_txt>
]]>

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