Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:16:05 (713622): wrapper (7.7.26015): starting
07:16:05 (713622): wrapper: running run_atlas (--nthreads 8)
[2026-03-30 07:16:05] Arguments: --nthreads 8
[2026-03-30 07:16:05] Threads: 8
[2026-03-30 07:16:05] Checking for CVMFS
[2026-03-30 07:16:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 07:16:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 07:16:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 07:16:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 07:16:06] 2.13.3.0 4429 561 54696 157871 3 76 2721229 4096001 4824 130560 0 2793541 99.994 46973 6305 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2026-03-30 07:16:06] CVMFS is ok
[2026-03-30 07:16:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 07:16:06] Checking for apptainer binary...
[2026-03-30 07:16:06] apptainer is not installed, using version from CVMFS
[2026-03-30 07:16:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 07:16:06] senture-c621e-l
[2026-03-30 07:16:06] apptainer works
[2026-03-30 07:16:06] Set ATHENA_PROC_NUMBER=8
[2026-03-30 07:16:06] Set ATHENA_CORE_NUMBER=8
[2026-03-30 07:16:06] Starting ATLAS job with PandaID=7072056982
[2026-03-30 07:16:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 08:43:38]  *** The last 200 lines of the pilot log: ***
[2026-03-30 08:43:38]  is_tar=False
[2026-03-30 08:43:38]  lfn=log.49263200._006904.job.log.tgz.1
[2026-03-30 08:43:38]  mtime=0
[2026-03-30 08:43:38]  protocol_id=None
[2026-03-30 08:43:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-30 08:43:38]  replicas=None
[2026-03-30 08:43:38]  scope=mc23_13p6TeV
[2026-03-30 08:43:38]  status=None
[2026-03-30 08:43:38]  status_code=0
[2026-03-30 08:43:38]  storage_token=
[2026-03-30 08:43:38]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/log.49263200._006904.job.log.tgz.1
[2026-03-30 08:43:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/9f/log.49263200._006904.job.log.tgz.1
[2026-03-30 08:43:38]  workdir=None
[2026-03-30 08:43:38] ]
[2026-03-30 08:43:38] 2026-03-30 07:43:02,006 | INFO     | transferring file log.49263200._006904.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/log.49263200._006904.job.log.tgz.1 to /var/lib/boinc
[2026-03-30 08:43:38] 2026-03-30 07:43:02,006 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/log.49263200._006904.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.492632
[2026-03-30 08:43:38] 2026-03-30 07:43:02,021 | INFO     | adding to output.list: log.49263200._006904.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/9f/log.49263200._006904.job.log.tg
[2026-03-30 08:43:38] 2026-03-30 07:43:02,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-30 08:43:38] 2026-03-30 07:43:02,022 | INFO     | summary of transferred files:
[2026-03-30 08:43:38] 2026-03-30 07:43:02,022 | INFO     |  -- lfn=log.49263200._006904.job.log.tgz.1, status_code=0, status=transferred
[2026-03-30 08:43:38] 2026-03-30 07:43:02,022 | INFO     | stage-out finished correctly
[2026-03-30 08:43:38] 2026-03-30 07:43:02,314 | WARNING  | process 722450 can no longer be monitored (due to stat problems) - aborting
[2026-03-30 08:43:38] 2026-03-30 07:43:02,315 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 08:43:38] 2026-03-30 07:43:02,419 | INFO     | PID=717671 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-30 08:43:38] 2026-03-30 07:43:02,419 | INFO     | .. there are 8 such processes running
[2026-03-30 08:43:38] 2026-03-30 07:43:02,526 | INFO     | number of running child processes to parent process 722450: 1
[2026-03-30 08:43:38] 2026-03-30 07:43:02,526 | INFO     | maximum number of monitored processes: 6
[2026-03-30 08:43:38] 2026-03-30 07:43:03,013 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-30 08:43:38] 2026-03-30 07:43:03,057 | INFO     | job 7072056982 has state=finished
[2026-03-30 08:43:38] 2026-03-30 07:43:03,057 | INFO     | preparing for final server update for job 7072056982 in state='finished'
[2026-03-30 08:43:38] 2026-03-30 07:43:03,058 | INFO     | reading metadata from: /var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/jobReport.json
[2026-03-30 08:43:38] 2026-03-30 07:43:03,060 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/5/workernode_map.json
[2026-03-30 08:43:38] 2026-03-30 07:43:03,060 | INFO     | this job has now completed (state=finished)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,060 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,060 | INFO     | log transfer has been attempted: DONE
[2026-03-30 08:43:38] 2026-03-30 07:43:03,060 | INFO     | job 7072056982 has finished - writing final server update
[2026-03-30 08:43:38] 2026-03-30 07:43:03,061 | INFO     | total number of processed events: 400 (read)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,070 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-7072056982/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,071 | INFO     | extracted standard info from prmon json
[2026-03-30 08:43:38] 2026-03-30 07:43:03,071 | INFO     | extracted standard memory fields from prmon json
[2026-03-30 08:43:38] 2026-03-30 07:43:03,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-30 08:43:38] 2026-03-30 07:43:03,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-30 08:43:38] 2026-03-30 07:43:03,071 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-30 08:43:38] 2026-03-30 07:43:03,073 | INFO     | fitting pss+swap vs Time
[2026-03-30 08:43:38] 2026-03-30 07:43:03,073 | INFO     | sum of square deviations: 147126479.5
[2026-03-30 08:43:38] 2026-03-30 07:43:03,074 | INFO     | sum of deviations: -1452490794.5000002
[2026-03-30 08:43:38] 2026-03-30 07:43:03,074 | INFO     | mean x: 1774854066.5
[2026-03-30 08:43:38] 2026-03-30 07:43:03,074 | INFO     | mean y: 2561217.935897436
[2026-03-30 08:43:38] 2026-03-30 07:43:03,074 | INFO     | intersect: 17524622521.469917
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | chi2: 0.07010994850505303
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | current memory leak: -9.87 B/s (using 78 data points, chi2=0.07)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | could have reported an average CPU frequency of 2600 MHz (6 samples)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | ..............................
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | . Timing measurements:
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | . get job = 0 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | . initial setup = 6 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,075 | INFO     | . payload setup = 12 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,076 | INFO     | . stage-in = 0 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,076 | INFO     | . payload execution = 5170 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,076 | INFO     | . stage-out = 0 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,076 | INFO     | . log creation = 0 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,076 | INFO     | ..............................
[2026-03-30 08:43:38] 2026-03-30 07:43:03,153 | INFO     | 
[2026-03-30 08:43:38] 2026-03-30 07:43:03,153 | INFO     | job summary report
[2026-03-30 08:43:38] 2026-03-30 07:43:03,153 | INFO     | --------------------------------------------------
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | PanDA job id: 7072056982
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | task id: 49263200
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | errors: (none)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | pilot state: finished 
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | transexitcode: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | exeerrorcode: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | exeerrordiag: 
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | exitcode: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | exitmsg: OK
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | cpuconsumptiontime: 37593 s
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | nevents: 400
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | neventsw: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | pid: 722450
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | pgrp: 722450
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | corecount: 8
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | event service: False
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | sizes: {0: 2279822, 1: 2280283, 11: 2280283, 5186: 2306575, 5187: 2315587, 5188: 2315965}
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | --------------------------------------------------
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | 
[2026-03-30 08:43:38] 2026-03-30 07:43:03,154 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-03-30 08:43:38] 2026-03-30 07:43:03,174 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,175 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 08:43:38] 2026-03-30 07:43:03,176 | INFO     | job 7072056982 has completed (purged errors)
[2026-03-30 08:43:38] 2026-03-30 07:43:03,176 | INFO     | overall cleanup function is called
[2026-03-30 08:43:38] 2026-03-30 07:43:04,183 | INFO     | --- collectZombieJob: --- 10, [722450]
[2026-03-30 08:43:38] 2026-03-30 07:43:04,183 | INFO     | zombie collector waiting for pid 722450
[2026-03-30 08:43:38] 2026-03-30 07:43:04,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 08:43:38] 2026-03-30 07:43:04,183 | INFO     | collected zombie processes
[2026-03-30 08:43:38] 2026-03-30 07:43:04,183 | INFO     | will attempt to kill all subprocesses of pid=722450
[2026-03-30 08:43:38] 2026-03-30 07:43:04,329 | INFO     | process IDs to be killed: [722450] (in reverse order)
[2026-03-30 08:43:38] 2026-03-30 07:43:04,411 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 08:43:38] 2026-03-30 07:43:04,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 08:43:38] 2026-03-30 07:43:04,416 | INFO     | did not find any defunct processes belonging to 722450
[2026-03-30 08:43:38] 2026-03-30 07:43:04,420 | INFO     | did not find any defunct processes belonging to 722450
[2026-03-30 08:43:38] 2026-03-30 07:43:04,420 | INFO     | ready for new job
[2026-03-30 08:43:38] 2026-03-30 07:43:04,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 08:43:38] 2026-03-30 07:43:04,422 | INFO     | **************************************
[2026-03-30 08:43:38] 2026-03-30 07:43:04,422 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 08:43:38] 2026-03-30 07:43:04,422 | INFO     | **************************************
[2026-03-30 08:43:38] 2026-03-30 07:43:04,422 | INFO     | 
[2026-03-30 08:43:38] 2026-03-30 07:43:04,424 | INFO     | pilot is running in a VM
[2026-03-30 08:43:38] 2026-03-30 07:43:04,424 | INFO     | architecture information:
[2026-03-30 08:43:38] 2026-03-30 07:43:04,424 | INFO     | executing command: cat /etc/os-release
[2026-03-30 08:43:38] 2026-03-30 07:43:04,438 | INFO     | cat /etc/os-release:
[2026-03-30 08:43:38] NAME="CentOS Linux"
[2026-03-30 08:43:38] VERSION="7 (Core)"
[2026-03-30 08:43:38] ID="centos"
[2026-03-30 08:43:38] ID_LIKE="rhel fedora"
[2026-03-30 08:43:38] VERSION_ID="7"
[2026-03-30 08:43:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 08:43:38] ANSI_COLOR="0;31"
[2026-03-30 08:43:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 08:43:38] HOME_URL="https://www.centos.org/"
[2026-03-30 08:43:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 08:43:38] 
[2026-03-30 08:43:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 08:43:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 08:43:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 08:43:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 08:43:38] 
[2026-03-30 08:43:38] 2026-03-30 07:43:04,438 | INFO     | **************************************
[2026-03-30 08:43:38] 2026-03-30 07:43:04,941 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-03-30 08:43:38] 2026-03-30 07:43:04,956 | INFO     | sufficient remaining disk space (115010961408 B)
[2026-03-30 08:43:38] 2026-03-30 07:43:04,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 08:43:38] 2026-03-30 07:43:04,956 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 08:43:38] 2026-03-30 07:43:04,956 | INFO     | update_server=False
[2026-03-30 08:43:38] 2026-03-30 07:43:04,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 08:43:38] 2026-03-30 07:43:04,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 08:43:38] 2026-03-30 07:43:04,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 08:43:38] 2026-03-30 07:43:04,998 | INFO     | all data control threads have been joined
[2026-03-30 08:43:38] 2026-03-30 07:43:05,030 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-30 08:43:38] 2026-03-30 07:43:05,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-30 08:43:38] 2026-03-30 07:43:05,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 08:43:38] 2026-03-30 07:43:05,030 | INFO     | will abort loop
[2026-03-30 08:43:38] 2026-03-30 07:43:05,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 08:43:38] 2026-03-30 07:43:05,440 | INFO     | all job control threads have been joined
[2026-03-30 08:43:38] 2026-03-30 07:43:05,887 | INFO     | all payload control threads have been joined
[2026-03-30 08:43:38] 2026-03-30 07:43:05,962 | INFO     | [job] retrieve thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:05,962 | INFO     | [job] queue monitor thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,003 | INFO     | [data] control thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,017 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,035 | INFO     | [job] job monitor thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,093 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,445 | INFO     | [job] control thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,539 | INFO     | [data] copytool_in thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,809 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:06,893 | INFO     | [payload] control thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:07,076 | INFO     | [data] copytool_out thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:07,153 | INFO     | [payload] validate_post thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:07,204 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:07,333 | INFO     | [job] validate thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:07,427 | INFO     | [payload] failed_post thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:08,963 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 08:43:38] 2026-03-30 07:43:31,506 | INFO     | [monitor] cgroup control has ended
[2026-03-30 08:43:38] 2026-03-30 07:43:32,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131915302598464)>', '<ExcThread(monitor, started 131914543392512)>']
[2026-03-30 08:43:38] 2026-03-30 07:43:34,742 | INFO     | PID=717671 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-30 08:43:38] 2026-03-30 07:43:34,743 | INFO     | .. there are 7 such processes running
[2026-03-30 08:43:38] 2026-03-30 07:43:34,744 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 08:43:38] 2026-03-30 07:43:34,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 08:43:38] 2026-03-30 07:43:34,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 08:43:38] 2026-03-30 07:43:34,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 08:43:38] 2026-03-30 07:43:34,744 | INFO     | [monitor] control thread has ended
[2026-03-30 08:43:38] 2026-03-30 07:43:37,772 | INFO     | all workflow threads have been joined
[2026-03-30 08:43:38] 2026-03-30 07:43:37,772 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 08:43:38] 2026-03-30 07:43:37,772 | INFO     | traces error code: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:37,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 08:43:38] 2026-03-30 07:43:37,904 [wrapper] ==== pilot stdout END ====
[2026-03-30 08:43:38] 2026-03-30 07:43:37,907 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 08:43:38] 2026-03-30 07:43:37,910 [wrapper] pilotpid: 717671
[2026-03-30 08:43:38] 2026-03-30 07:43:37,913 [wrapper] Pilot exit status: 0
[2026-03-30 08:43:38] 2026-03-30 07:43:37,922 [wrapper] pandaids: 7072056982
[2026-03-30 08:43:38] 2026-03-30 07:43:37,964 [wrapper] cleanup supervisor_pilot  755863 717672
[2026-03-30 08:43:38] 2026-03-30 07:43:37,967 [wrapper] Test setup, not cleaning
[2026-03-30 08:43:38] 2026-03-30 07:43:37,970 [wrapper] apfmon messages muted
[2026-03-30 08:43:38] 2026-03-30 07:43:37,973 [wrapper] ==== wrapper stdout END ====
[2026-03-30 08:43:38] 2026-03-30 07:43:37,976 [wrapper] ==== wrapper stderr END ====
[2026-03-30 08:43:38]  *** Error codes and diagnostics ***
[2026-03-30 08:43:38]     "exeErrorCode": 0,
[2026-03-30 08:43:38]     "exeErrorDiag": "",
[2026-03-30 08:43:38]     "pilotErrorCode": 0,
[2026-03-30 08:43:38]     "pilotErrorDiag": "",
[2026-03-30 08:43:38]  *** Listing of results directory ***
[2026-03-30 08:43:38] total 417264
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc    585013 Mar 30 02:12 pilot3.tar.gz
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc      5118 Mar 30 02:15 queuedata.json
[2026-03-30 08:43:38] -rwx------ 1 boinc boinc     36322 Mar 30 02:15 runpilot2-wrapper.sh
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc       100 Mar 30 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 08:43:38] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 07:16 run_atlas
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc       105 Mar 30 07:16 job.xml
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc 222802236 Mar 30 07:16 EVNT.49263198._000277.pool.root.1
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc    597542 Mar 30 07:16 input.tar.gz
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc     15845 Mar 30 07:16 start_atlas.sh
[2026-03-30 08:43:38] drwxrwx--x 2 boinc boinc      4096 Mar 30 07:16 shared
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc         0 Mar 30 07:16 boinc_setup_complete
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc      6617 Mar 30 07:16 init_data.xml
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc         0 Mar 30 07:16 boinc_lockfile
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc      2573 Mar 30 07:16 pandaJob.out
[2026-03-30 08:43:38] -rw------- 1 boinc boinc        50 Mar 30 07:16 setup.sh.local
[2026-03-30 08:43:38] -rw------- 1 boinc boinc   1004063 Mar 30 07:16 agis_schedconf.cvmfs.json
[2026-03-30 08:43:38] -rw------- 1 boinc boinc   1511579 Mar 30 07:16 agis_ddmendpoints.agis.ALL.json
[2026-03-30 08:43:38] -rw------- 1 boinc boinc       437 Mar 30 07:16 workernode_map.json
[2026-03-30 08:43:38] drwx------ 5 boinc boinc      4096 Mar 30 07:16 pilot3
[2026-03-30 08:43:38] -rw------- 1 boinc boinc 198367315 Mar 30 08:42 HITS.49263200._006904.pool.root.1
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc       529 Mar 30 08:42 boinc_task_state.xml
[2026-03-30 08:43:38] -rw------- 1 boinc boinc      1031 Mar 30 08:42 memory_monitor_summary.json
[2026-03-30 08:43:38] -rw------- 1 boinc boinc    322954 Mar 30 08:43 log.49263200._006904.job.log.tgz.1
[2026-03-30 08:43:38] -rw------- 1 boinc boinc      6355 Mar 30 08:43 heartbeat.json
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc        27 Mar 30 08:43 wrapper_checkpoint.txt
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc      8192 Mar 30 08:43 boinc_mmap_file
[2026-03-30 08:43:38] -rw------- 1 boinc boinc        95 Mar 30 08:43 pilot_heartbeat.json
[2026-03-30 08:43:38] -rw------- 1 boinc boinc      5074 Mar 30 08:43 pilotlog.txt
[2026-03-30 08:43:38] -rw------- 1 boinc boinc    760503 Mar 30 08:43 log.49263200._006904.job.log.1
[2026-03-30 08:43:38] -rw------- 1 boinc boinc       357 Mar 30 08:43 output.list
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc       620 Mar 30 08:43 runtime_log
[2026-03-30 08:43:38] -rw------- 1 boinc boinc   1105920 Mar 30 08:43 result.tar.gz
[2026-03-30 08:43:38] -rw------- 1 boinc boinc       648 Mar 30 08:43 wtrLDmWPGR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmFKMKDmOb6vkn.diag
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc      9423 Mar 30 08:43 runtime_log.err
[2026-03-30 08:43:38] -rw-r--r-- 1 boinc boinc     21354 Mar 30 08:43 stderr.txt
[2026-03-30 08:43:38] HITS file was successfully produced:
[2026-03-30 08:43:38] -rw------- 1 boinc boinc 198367315 Mar 30 08:42 shared/HITS.pool.root.1
[2026-03-30 08:43:38]  *** Contents of shared directory: ***
[2026-03-30 08:43:38] total 412988
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc 222802236 Mar 30 07:16 ATLAS.root_0
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc    597542 Mar 30 07:16 input.tar.gz
[2026-03-30 08:43:38] -rw-r--r-- 2 boinc boinc     15845 Mar 30 07:16 start_atlas.sh
[2026-03-30 08:43:38] -rw------- 1 boinc boinc 198367315 Mar 30 08:42 HITS.pool.root.1
[2026-03-30 08:43:38] -rw------- 1 boinc boinc   1105920 Mar 30 08:43 result.tar.gz
08:43:39 (713622): run_atlas exited; CPU time 37767.012660
08:43:39 (713622): called boinc_finish(0)

</stderr_txt>
]]>

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