Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:20:16 (4031008): wrapper (7.7.26015): starting
21:20:16 (4031008): wrapper: running run_atlas (--nthreads 4)
[2026-04-05 21:20:16] Arguments: --nthreads 4
[2026-04-05 21:20:16] Threads: 4
[2026-04-05 21:20:16] Checking for CVMFS
[2026-04-05 21:20:16] No cvmfs_config command found, will try listing directly
[2026-04-05 21:20:16] CVMFS is ok
[2026-04-05 21:20:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-05 21:20:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-05 21:20:16] Further information can be found at the LHC@home message board.
[2026-04-05 21:20:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-05 21:20:16] Checking for apptainer binary...
[2026-04-05 21:20:16] which: no apptainer in ((null))
[2026-04-05 21:20:16] apptainer is not installed, using version from CVMFS
[2026-04-05 21:20:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-05 21:20:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/7/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-05 21:20:16] apptainer works
[2026-04-05 21:20:16] Set ATHENA_PROC_NUMBER=4
[2026-04-05 21:20:16] Set ATHENA_CORE_NUMBER=4
[2026-04-05 21:20:16] Starting ATLAS job with PandaID=7072133611
[2026-04-05 21:20:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-05 22:51:43]  *** The last 200 lines of the pilot log: ***
[2026-04-05 22:51:43] 2026-04-05 20:50:39,144 | WARNING  | process 4040888 can no longer be monitored (due to stat problems) - aborting
[2026-04-05 22:51:43] 2026-04-05 20:50:39,144 | INFO     | using path: /var/lib/boinc/var/slot44/slots/7/PanDA_Pilot-7072133611/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,457 | INFO     | time since job start (5408s) is within the limit (345600.0s)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,485 | INFO     | number of running child processes to parent process 4040888: 1
[2026-04-05 22:51:43] 2026-04-05 20:50:39,485 | INFO     | maximum number of monitored processes: 6
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | will send heartbeat for job in 'finished' state
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | note: will only send 'running' state to server to prevent sending any final state too early
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | log transfer has been attempted: DONE
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | job 7072133611 has state 'running' - writing heartbeat
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3812366/.job.ad'
[2026-04-05 22:51:43] 2026-04-05 20:50:39,486 | INFO     | total number of processed events: 400 (read)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | INFO     | using path: /var/lib/boinc/var/slot44/slots/7/PanDA_Pilot-7072133611/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | INFO     | extracted standard info from prmon json
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 22:51:43] 2026-04-05 20:50:39,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 22:51:43] 2026-04-05 20:50:39,501 | INFO     | fitting pss+swap vs Time
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | sum of square deviations: 170944600.5
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | sum of deviations: -20851491652.0
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | mean x: 1775419630.5
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | mean y: 2628439.6341463416
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | intersect: 216564880162.62833
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | chi2: 0.1340156620082792
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | current memory leak: -121.98 B/s (using 82 data points, chi2=0.13)
[2026-04-05 22:51:43] 2026-04-05 20:50:39,502 | INFO     | could have reported an average CPU frequency of 2724 MHz (6 samples)
[2026-04-05 22:51:43] 2026-04-05 20:50:40,887 | INFO     | PID=4035577 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,580 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-05 22:51:43] 2026-04-05 20:50:41,630 | INFO     | job 7072133611 has state=finished
[2026-04-05 22:51:43] 2026-04-05 20:50:41,633 | INFO     | preparing for final server update for job 7072133611 in state='finished'
[2026-04-05 22:51:43] 2026-04-05 20:50:41,633 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/7/PanDA_Pilot-7072133611/jobReport.json
[2026-04-05 22:51:43] 2026-04-05 20:50:41,636 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/7/workernode_map.json
[2026-04-05 22:51:43] 2026-04-05 20:50:41,636 | INFO     | this job has now completed (state=finished)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,637 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,637 | INFO     | log transfer has been attempted: DONE
[2026-04-05 22:51:43] 2026-04-05 20:50:41,637 | INFO     | job 7072133611 has finished - writing final server update
[2026-04-05 22:51:43] 2026-04-05 20:50:41,637 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3812366/.job.ad'
[2026-04-05 22:51:43] 2026-04-05 20:50:41,637 | INFO     | total number of processed events: 400 (read)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | INFO     | using path: /var/lib/boinc/var/slot44/slots/7/PanDA_Pilot-7072133611/memory_monitor_summary.json (trf name=prmon)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | INFO     | extracted standard info from prmon json
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | INFO     | extracted standard memory fields from prmon json
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-05 22:51:43] 2026-04-05 20:50:41,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-05 22:51:43] 2026-04-05 20:50:41,655 | INFO     | fitting pss+swap vs Time
[2026-04-05 22:51:43] 2026-04-05 20:50:41,655 | INFO     | sum of square deviations: 170944600.5
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | sum of deviations: -20851491652.0
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | mean x: 1775419630.5
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | mean y: 2628439.6341463416
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | intersect: 216564880162.62833
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | chi2: 0.1340156620082792
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | current memory leak: -121.98 B/s (using 82 data points, chi2=0.13)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | could have reported an average CPU frequency of 2724 MHz (7 samples)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | ..............................
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . Timing measurements:
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . get job = 0 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . initial setup = 5 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . payload setup = 8 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . stage-in = 0 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,656 | INFO     | . payload execution = 5384 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,657 | INFO     | . stage-out = 0 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,657 | INFO     | . log creation = 0 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,657 | INFO     | ..............................
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | job summary report
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | --------------------------------------------------
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | PanDA job id: 7072133611
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | task id: 49263208
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | errors: (none)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | pilot state: finished 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | transexitcode: 0
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | exeerrorcode: 0
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | exeerrordiag: 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,708 | INFO     | exitcode: 0
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | exitmsg: OK
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | cpuconsumptiontime: 20615 s
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | nevents: 400
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | neventsw: 0
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | pid: 4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | pgrp: 4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | corecount: 4
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | event service: False
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | sizes: {0: 2279824, 1: 2280285, 11: 2280285, 5396: 2306929, 5397: 2315949, 5400: 2316351}
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | --------------------------------------------------
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | 
[2026-04-05 22:51:43] 2026-04-05 20:50:41,709 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/7
[2026-04-05 22:51:43] 2026-04-05 20:50:41,730 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,730 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,730 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,731 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | job 7072133611 has completed (purged errors)
[2026-04-05 22:51:43] 2026-04-05 20:50:41,732 | INFO     | overall cleanup function is called
[2026-04-05 22:51:43] 2026-04-05 20:50:42,740 | INFO     | --- collectZombieJob: --- 10, [4040888]
[2026-04-05 22:51:43] 2026-04-05 20:50:42,740 | INFO     | zombie collector waiting for pid 4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:42,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-05 22:51:43] 2026-04-05 20:50:42,741 | INFO     | collected zombie processes
[2026-04-05 22:51:43] 2026-04-05 20:50:42,741 | INFO     | will attempt to kill all subprocesses of pid=4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:43,092 | INFO     | process IDs to be killed: [4040888] (in reverse order)
[2026-04-05 22:51:43] 2026-04-05 20:50:43,221 | WARNING  | found no corresponding commands to process id(s)
[2026-04-05 22:51:43] 2026-04-05 20:50:43,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-05 22:51:43] 2026-04-05 20:50:43,238 | INFO     | did not find any defunct processes belonging to 4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:43,250 | INFO     | did not find any defunct processes belonging to 4040888
[2026-04-05 22:51:43] 2026-04-05 20:50:43,250 | INFO     | ready for new job
[2026-04-05 22:51:43] 2026-04-05 20:50:43,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-05 22:51:43] 2026-04-05 20:50:43,251 | INFO     | **************************************
[2026-04-05 22:51:43] 2026-04-05 20:50:43,252 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-05 22:51:43] 2026-04-05 20:50:43,252 | INFO     | **************************************
[2026-04-05 22:51:43] 2026-04-05 20:50:43,252 | INFO     | 
[2026-04-05 22:51:43] 2026-04-05 20:50:43,257 | INFO     | architecture information:
[2026-04-05 22:51:43] 2026-04-05 20:50:43,257 | INFO     | executing command: cat /etc/os-release
[2026-04-05 22:51:43] 2026-04-05 20:50:43,271 | INFO     | cat /etc/os-release:
[2026-04-05 22:51:43] NAME="CentOS Linux"
[2026-04-05 22:51:43] VERSION="7 (Core)"
[2026-04-05 22:51:43] ID="centos"
[2026-04-05 22:51:43] ID_LIKE="rhel fedora"
[2026-04-05 22:51:43] VERSION_ID="7"
[2026-04-05 22:51:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-05 22:51:43] ANSI_COLOR="0;31"
[2026-04-05 22:51:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-05 22:51:43] HOME_URL="https://www.centos.org/"
[2026-04-05 22:51:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-05 22:51:43] 
[2026-04-05 22:51:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-05 22:51:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-05 22:51:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-05 22:51:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-05 22:51:43] 
[2026-04-05 22:51:43] 2026-04-05 20:50:43,271 | INFO     | **************************************
[2026-04-05 22:51:43] 2026-04-05 20:50:43,774 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/7
[2026-04-05 22:51:43] 2026-04-05 20:50:43,791 | INFO     | sufficient remaining disk space (333306658816 B)
[2026-04-05 22:51:43] 2026-04-05 20:50:43,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-05 22:51:43] 2026-04-05 20:50:43,792 | INFO     | current server update state: UPDATING_FINAL
[2026-04-05 22:51:43] 2026-04-05 20:50:43,792 | INFO     | update_server=False
[2026-04-05 22:51:43] 2026-04-05 20:50:43,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-05 22:51:43] 2026-04-05 20:50:43,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-05 22:51:43] 2026-04-05 20:50:43,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-05 22:51:43] 2026-04-05 20:50:43,793 | INFO     | aborting loop
[2026-04-05 22:51:43] 2026-04-05 20:50:44,115 | INFO     | all job control threads have been joined
[2026-04-05 22:51:43] 2026-04-05 20:50:44,529 | INFO     | all data control threads have been joined
[2026-04-05 22:51:43] 2026-04-05 20:50:44,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-05 22:51:43] 2026-04-05 20:50:44,797 | INFO     | [job] retrieve thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:44,798 | INFO     | [job] job monitor thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:44,918 | INFO     | all payload control threads have been joined
[2026-04-05 22:51:43] 2026-04-05 20:50:45,078 | INFO     | [job] validate thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,121 | INFO     | [job] control thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,148 | INFO     | [payload] validate_post thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,213 | INFO     | [job] create_data_payload thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,297 | INFO     | [payload] validate_pre thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,476 | INFO     | [data] copytool_in thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,535 | INFO     | [data] control thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,886 | INFO     | [payload] failed_post thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:45,923 | INFO     | [payload] control thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:46,200 | INFO     | [payload] execute_payloads thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:46,584 | INFO     | [data] copytool_out thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:46,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-05 22:51:43] 2026-04-05 20:50:47,724 | INFO     | [job] queue monitor thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:47,799 | INFO     | [data] queue_monitor thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:50:54,636 | INFO     | job.realtimelogging is not enabled
[2026-04-05 22:51:43] 2026-04-05 20:50:55,641 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-05 22:51:43] 2026-04-05 20:51:11,965 | INFO     | 5415s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-05 22:51:43] 2026-04-05 20:51:13,406 | INFO     | PID=4035577 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-05 22:51:43] 2026-04-05 20:51:13,406 | INFO     | found 0 job(s) in 20 queues
[2026-04-05 22:51:43] 2026-04-05 20:51:13,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-05 22:51:43] 2026-04-05 20:51:13,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-05 22:51:43] 2026-04-05 20:51:37,528 | INFO     | [monitor] cgroup control has ended
[2026-04-05 22:51:43] 2026-04-05 20:51:38,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22369433093952)>', '<ExcThread(monitor, started 22369120794368)>']
[2026-04-05 22:51:43] 2026-04-05 20:51:38,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-05 22:51:43] 2026-04-05 20:51:38,531 | INFO     | [monitor] control thread has ended
[2026-04-05 22:51:43] 2026-04-05 20:51:43,395 | INFO     | all workflow threads have been joined
[2026-04-05 22:51:43] 2026-04-05 20:51:43,396 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-05 22:51:43] 2026-04-05 20:51:43,396 | INFO     | traces error code: 0
[2026-04-05 22:51:43] 2026-04-05 20:51:43,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-05 22:51:43] 2026-04-05 20:51:43,479 [wrapper] ==== pilot stdout END ====
[2026-04-05 22:51:43] 2026-04-05 20:51:43,482 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-05 22:51:43] 2026-04-05 20:51:43,485 [wrapper] pilotpid: 4035577
[2026-04-05 22:51:43] 2026-04-05 20:51:43,488 [wrapper] Pilot exit status: 0
[2026-04-05 22:51:43] 2026-04-05 20:51:43,499 [wrapper] pandaids: 7072133611
[2026-04-05 22:51:43] 2026-04-05 20:51:43,597 [wrapper] cleanup supervisor_pilot 4134193 4035578
[2026-04-05 22:51:43] 2026-04-05 20:51:43,599 [wrapper] Test setup, not cleaning
[2026-04-05 22:51:43] 2026-04-05 20:51:43,601 [wrapper] apfmon messages muted
[2026-04-05 22:51:43] 2026-04-05 20:51:43,603 [wrapper] ==== wrapper stdout END ====
[2026-04-05 22:51:43] 2026-04-05 20:51:43,605 [wrapper] ==== wrapper stderr END ====
[2026-04-05 22:51:43]  *** Error codes and diagnostics ***
[2026-04-05 22:51:43]     "exeErrorCode": 0,
[2026-04-05 22:51:43]     "exeErrorDiag": "",
[2026-04-05 22:51:43]     "pilotErrorCode": 0,
[2026-04-05 22:51:43]     "pilotErrorDiag": "",
[2026-04-05 22:51:43]  *** Listing of results directory ***
[2026-04-05 22:51:43] total 418472
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc    585013 Mar 30 06:32 pilot3.tar.gz
[2026-04-05 22:51:43] -rwx------. 1 boinc boinc     36322 Mar 30 06:33 runpilot2-wrapper.sh
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc      5118 Mar 30 06:34 queuedata.json
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc       100 Apr  5 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-05 22:51:43] -rwxr-xr-x. 1 boinc boinc      7986 Apr  5 21:20 run_atlas
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc       105 Apr  5 21:20 job.xml
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc      6623 Apr  5 21:20 init_data.xml
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc 223837724 Apr  5 21:20 EVNT.49263206._000385.pool.root.1
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc     15845 Apr  5 21:20 start_atlas.sh
[2026-04-05 22:51:43] drwxrwx--x. 2 boinc boinc      4096 Apr  5 21:20 shared
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc    597532 Apr  5 21:20 input.tar.gz
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc         0 Apr  5 21:20 boinc_lockfile
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc      2572 Apr  5 21:20 pandaJob.out
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc   1005088 Apr  5 21:20 agis_schedconf.cvmfs.json
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc   1511579 Apr  5 21:20 agis_ddmendpoints.agis.ALL.json
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc       443 Apr  5 21:20 workernode_map.json
[2026-04-05 22:51:43] drwx------. 5 boinc boinc      4096 Apr  5 21:20 pilot3
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc 198663838 Apr  5 22:50 HITS.49263208._008378.pool.root.1
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc        95 Apr  5 22:50 pilot_heartbeat.json
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc       529 Apr  5 22:50 boinc_task_state.xml
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc      1020 Apr  5 22:50 memory_monitor_summary.json
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc    265621 Apr  5 22:50 log.49263208._008378.job.log.tgz.1
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc      6349 Apr  5 22:50 heartbeat.json
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc      8192 Apr  5 22:51 boinc_mmap_file
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc        27 Apr  5 22:51 wrapper_checkpoint.txt
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc      4941 Apr  5 22:51 pilotlog.txt
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc    774570 Apr  5 22:51 log.49263208._008378.job.log.1
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc       357 Apr  5 22:51 output.list
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc       620 Apr  5 22:51 runtime_log
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc   1054720 Apr  5 22:51 result.tar.gz
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc       661 Apr  5 22:51 wwxLDmcUJR9n9Rq4apOajLDm4fhM0noT9bVoINGKDm6pOKDm6XDZRn.diag
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc      9204 Apr  5 22:51 runtime_log.err
[2026-04-05 22:51:43] -rw-r--r--. 1 boinc boinc     21906 Apr  5 22:51 stderr.txt
[2026-04-05 22:51:43] HITS file was successfully produced:
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc 198663838 Apr  5 22:50 shared/HITS.pool.root.1
[2026-04-05 22:51:43]  *** Contents of shared directory: ***
[2026-04-05 22:51:43] total 414240
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc 223837724 Apr  5 21:20 ATLAS.root_0
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc     15845 Apr  5 21:20 start_atlas.sh
[2026-04-05 22:51:43] -rw-r--r--. 2 boinc boinc    597532 Apr  5 21:20 input.tar.gz
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc 198663838 Apr  5 22:50 HITS.pool.root.1
[2026-04-05 22:51:43] -rw-------. 1 boinc boinc   1054720 Apr  5 22:51 result.tar.gz
22:51:44 (4031008): run_atlas exited; CPU time 20764.852121
22:51:44 (4031008): called boinc_finish(0)

</stderr_txt>
]]>

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