Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:14:29 (1844539): wrapper (7.7.26015): starting
19:14:29 (1844539): wrapper: running run_atlas (--nthreads 2)
[2026-03-30 19:14:29] Arguments: --nthreads 2
[2026-03-30 19:14:29] Threads: 2
[2026-03-30 19:14:29] Checking for CVMFS
[2026-03-30 19:14:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 19:14:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 19:14:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 19:14:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 19:14:30] 2.9.2.0 1552346 3414 56452 157889 1 49 30307553 36864001 0 130560 0 1107014 99.979 132721 14666 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 19:14:30] CVMFS is ok
[2026-03-30 19:14:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 19:14:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 19:14:30] Further information can be found at the LHC@home message board.
[2026-03-30 19:14:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 19:14:30] Checking for apptainer binary...
[2026-03-30 19:14:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 19:14:30] Running /usr/bin/apptainer --version
[2026-03-30 19:14:30] apptainer version 1.4.1-1.1
[2026-03-30 19:14:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 19:14:30] thA337
[2026-03-30 19:14:30] apptainer works
[2026-03-30 19:14:30] Set ATHENA_PROC_NUMBER=2
[2026-03-30 19:14:30] Set ATHENA_CORE_NUMBER=2
[2026-03-30 19:14:30] Starting ATLAS job with PandaID=7072089795
[2026-03-30 19:14:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 21:22:05]  *** The last 200 lines of the pilot log: ***
[2026-03-30 21:22:05] 2026-03-30 19:21:02,044 | INFO     | zombie collector waiting for pid 1853013
[2026-03-30 21:22:05] 2026-03-30 19:21:02,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 21:22:05] 2026-03-30 19:21:02,044 | INFO     | collected zombie processes
[2026-03-30 21:22:05] 2026-03-30 19:21:02,045 | INFO     | will attempt to kill all subprocesses of pid=1853013
[2026-03-30 21:22:05] 2026-03-30 19:21:02,075 | INFO     | process IDs to be killed: [1853013] (in reverse order)
[2026-03-30 21:22:05] 2026-03-30 19:21:02,096 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 21:22:05] 2026-03-30 19:21:02,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 21:22:05] 2026-03-30 19:21:02,100 | INFO     | did not find any defunct processes belonging to 1853013
[2026-03-30 21:22:05] 2026-03-30 19:21:02,102 | INFO     | did not find any defunct processes belonging to 1853013
[2026-03-30 21:22:05] 2026-03-30 19:21:02,102 | INFO     | ready for new job
[2026-03-30 21:22:05] 2026-03-30 19:21:02,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 21:22:05] 2026-03-30 19:21:02,104 | INFO     | **************************************
[2026-03-30 21:22:05] 2026-03-30 19:21:02,104 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 21:22:05] 2026-03-30 19:21:02,105 | INFO     | **************************************
[2026-03-30 21:22:05] 2026-03-30 19:21:02,105 | INFO     | 
[2026-03-30 21:22:05] 2026-03-30 19:21:02,105 | INFO     | architecture information:
[2026-03-30 21:22:05] 2026-03-30 19:21:02,106 | INFO     | executing command: cat /etc/os-release
[2026-03-30 21:22:05] 2026-03-30 19:21:02,121 | INFO     | cat /etc/os-release:
[2026-03-30 21:22:05] NAME="CentOS Linux"
[2026-03-30 21:22:05] VERSION="7 (Core)"
[2026-03-30 21:22:05] ID="centos"
[2026-03-30 21:22:05] ID_LIKE="rhel fedora"
[2026-03-30 21:22:05] VERSION_ID="7"
[2026-03-30 21:22:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 21:22:05] ANSI_COLOR="0;31"
[2026-03-30 21:22:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 21:22:05] HOME_URL="https://www.centos.org/"
[2026-03-30 21:22:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 21:22:05] 
[2026-03-30 21:22:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 21:22:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 21:22:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 21:22:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 21:22:05] 
[2026-03-30 21:22:05] 2026-03-30 19:21:02,121 | INFO     | **************************************
[2026-03-30 21:22:05] 2026-03-30 19:21:02,625 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 21:22:05] 2026-03-30 19:21:02,637 | INFO     | sufficient remaining disk space (480612712448 B)
[2026-03-30 21:22:05] 2026-03-30 19:21:02,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 21:22:05] 2026-03-30 19:21:02,637 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 21:22:05] 2026-03-30 19:21:02,638 | INFO     | update_server=False
[2026-03-30 21:22:05] 2026-03-30 19:21:02,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 21:22:05] 2026-03-30 19:21:02,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 21:22:05] 2026-03-30 19:21:02,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 21:22:05] 2026-03-30 19:21:02,821 | INFO     | all data control threads have been joined
[2026-03-30 21:22:05] 2026-03-30 19:21:03,077 | INFO     | all payload control threads have been joined
[2026-03-30 21:22:05] 2026-03-30 19:21:03,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 21:22:05] 2026-03-30 19:21:03,641 | INFO     | [job] queue monitor thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:03,643 | INFO     | [job] retrieve thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:03,828 | INFO     | [data] control thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:03,886 | INFO     | [payload] failed_post thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,068 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,082 | INFO     | [payload] control thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,103 | INFO     | [job] validate thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,176 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,209 | INFO     | all job control threads have been joined
[2026-03-30 21:22:05] 2026-03-30 19:21:04,210 | INFO     | [data] copytool_in thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,219 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:04,446 | INFO     | [payload] validate_post thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:05,215 | INFO     | [job] control thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:05,625 | INFO     | [data] copytool_out thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:05,674 | WARNING  | process 1853013 can no longer be monitored (due to stat problems) - aborting
[2026-03-30 21:22:05] 2026-03-30 19:21:05,694 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 21:22:05] 2026-03-30 19:21:05,720 | INFO     | number of running child processes to parent process 1853013: 1
[2026-03-30 21:22:05] 2026-03-30 19:21:05,720 | INFO     | maximum number of monitored processes: 6
[2026-03-30 21:22:05] 2026-03-30 19:21:05,720 | INFO     | aborting job monitoring since job object (job id=7072089795) has expired
[2026-03-30 21:22:05] 2026-03-30 19:21:05,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 21:22:05] 2026-03-30 19:21:05,720 | INFO     | will abort loop
[2026-03-30 21:22:05] 2026-03-30 19:21:06,645 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:06,725 | INFO     | [job] job monitor thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:13,258 | INFO     | job.realtimelogging is not enabled
[2026-03-30 21:22:05] 2026-03-30 19:21:14,264 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 21:22:05] 2026-03-30 19:21:33,563 | INFO     | PID=1848579 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 21:22:05] 2026-03-30 19:21:33,564 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 21:22:05] 2026-03-30 19:21:33,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 21:22:05] 2026-03-30 19:21:33,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 21:22:05] 2026-03-30 19:21:58,913 | INFO     | [monitor] cgroup control has ended
[2026-03-30 21:22:05] 2026-03-30 19:22:00,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107779979072)>', '<ExcThread(monitor, started 140107067684608)>']
[2026-03-30 21:22:05] 2026-03-30 19:22:01,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 21:22:05] 2026-03-30 19:22:01,711 | INFO     | [monitor] control thread has ended
[2026-03-30 21:22:05] 2026-03-30 19:22:05,759 | INFO     | all workflow threads have been joined
[2026-03-30 21:22:05] 2026-03-30 19:22:05,759 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 21:22:05] 2026-03-30 19:22:05,760 | INFO     | traces error code: 0
[2026-03-30 21:22:05] 2026-03-30 19:22:05,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 21:22:05] 2026-03-30 19:22:05,802 [wrapper] ==== pilot stdout END ====
[2026-03-30 21:22:05] 2026-03-30 19:22:05,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 21:22:05] 2026-03-30 19:22:05,807 [wrapper] pilotpid: 1848579
[2026-03-30 21:22:05] 2026-03-30 19:22:05,809 [wrapper] Pilot exit status: 0
[2026-03-30 21:22:05] 2026-03-30 19:22:05,816 [wrapper] pandaids: 7072089795
[2026-03-30 21:22:05] 2026-03-30 19:22:05,829 [wrapper] cleanup supervisor_pilot 1858731 1848580
[2026-03-30 21:22:05] 2026-03-30 19:22:05,832 [wrapper] Test setup, not cleaning
[2026-03-30 21:22:05] 2026-03-30 19:22:05,834 [wrapper] apfmon messages muted
[2026-03-30 21:22:05] 2026-03-30 19:22:05,836 [wrapper] ==== wrapper stdout END ====
[2026-03-30 21:22:05] 2026-03-30 19:22:05,839 [wrapper] ==== wrapper stderr END ====
[2026-03-30 21:22:05]  *** Error codes and diagnostics ***
[2026-03-30 21:22:05]     "exeErrorCode": 0,
[2026-03-30 21:22:05]     "exeErrorDiag": "",
[2026-03-30 21:22:05]     "pilotErrorCode": 0,
[2026-03-30 21:22:05]     "pilotErrorDiag": "",
[2026-03-30 21:22:05]  *** Listing of results directory ***
[2026-03-30 21:22:05] total 415652
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc    585013 Mar 30 04:54 pilot3.tar.gz
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc      5118 Mar 30 04:58 queuedata.json
[2026-03-30 21:22:05] -rwx------ 1 boinc boinc     36322 Mar 30 04:59 runpilot2-wrapper.sh
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc       100 Mar 30 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 21:22:05] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 19:14 run_atlas
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc       105 Mar 30 19:14 job.xml
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc 223239304 Mar 30 19:14 EVNT.49263198._000313.pool.root.1
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc    597540 Mar 30 19:14 input.tar.gz
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc     15845 Mar 30 19:14 start_atlas.sh
[2026-03-30 21:22:05] drwxrwx--x 2 boinc boinc      4096 Mar 30 19:14 shared
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc         0 Mar 30 19:14 boinc_setup_complete
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc      6205 Mar 30 19:14 init_data.xml
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc         0 Mar 30 19:14 boinc_lockfile
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc      2573 Mar 30 19:14 pandaJob.out
[2026-03-30 21:22:05] -rw------- 1 boinc boinc   1004316 Mar 30 19:14 agis_schedconf.cvmfs.json
[2026-03-30 21:22:05] -rw------- 1 boinc boinc   1511579 Mar 30 19:14 agis_ddmendpoints.agis.ALL.json
[2026-03-30 21:22:05] -rw------- 1 boinc boinc       419 Mar 30 19:14 workernode_map.json
[2026-03-30 21:22:05] drwx------ 5 boinc boinc      4096 Mar 30 19:14 pilot3
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc       529 Mar 30 21:20 boinc_task_state.xml
[2026-03-30 21:22:05] -rw------- 1 boinc boinc 195761963 Mar 30 21:20 HITS.49263200._007804.pool.root.1
[2026-03-30 21:22:05] -rw------- 1 boinc boinc      1017 Mar 30 21:20 memory_monitor_summary.json
[2026-03-30 21:22:05] -rw------- 1 boinc boinc    264341 Mar 30 21:21 log.49263200._007804.job.log.tgz.1
[2026-03-30 21:22:05] -rw------- 1 boinc boinc      6299 Mar 30 21:21 heartbeat.json
[2026-03-30 21:22:05] -rw------- 1 boinc boinc        95 Mar 30 21:21 pilot_heartbeat.json
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc      8192 Mar 30 21:21 boinc_mmap_file
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc        27 Mar 30 21:21 wrapper_checkpoint.txt
[2026-03-30 21:22:05] -rw------- 1 boinc boinc      5344 Mar 30 21:22 pilotlog.txt
[2026-03-30 21:22:05] -rw------- 1 boinc boinc   1089328 Mar 30 21:22 log.49263200._007804.job.log.1
[2026-03-30 21:22:05] -rw------- 1 boinc boinc       357 Mar 30 21:22 output.list
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc       620 Mar 30 21:22 runtime_log
[2026-03-30 21:22:05] -rw------- 1 boinc boinc   1372160 Mar 30 21:22 result.tar.gz
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc      8896 Mar 30 21:22 runtime_log.err
[2026-03-30 21:22:05] -rw------- 1 boinc boinc       658 Mar 30 21:22 OCwMDmu1HR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmqTMKDm6Xfqqm.diag
[2026-03-30 21:22:05] -rw-r--r-- 1 boinc boinc     11240 Mar 30 21:22 stderr.txt
[2026-03-30 21:22:05] HITS file was successfully produced:
[2026-03-30 21:22:05] -rw------- 1 boinc boinc 195761963 Mar 30 21:20 shared/HITS.pool.root.1
[2026-03-30 21:22:05]  *** Contents of shared directory: ***
[2026-03-30 21:22:05] total 411128
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc 223239304 Mar 30 19:14 ATLAS.root_0
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc    597540 Mar 30 19:14 input.tar.gz
[2026-03-30 21:22:05] -rw-r--r-- 2 boinc boinc     15845 Mar 30 19:14 start_atlas.sh
[2026-03-30 21:22:05] -rw------- 1 boinc boinc 195761963 Mar 30 21:20 HITS.pool.root.1
[2026-03-30 21:22:05] -rw------- 1 boinc boinc   1372160 Mar 30 21:22 result.tar.gz
21:22:07 (1844539): run_atlas exited; CPU time 14555.487647
21:22:07 (1844539): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN