Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:41 (1891149): wrapper (7.7.26015): starting
16:47:41 (1891149): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 16:47:41] Arguments: --nthreads 4
[2026-03-30 16:47:41] Threads: 4
[2026-03-30 16:47:41] Checking for CVMFS
[2026-03-30 16:47:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 16:47:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 16:47:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 16:47:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 16:47:42] 2.9.2.0 1451094 3427 98108 157884 0 50 29995732 36864000 0 130560 0 1682099 99.985 127238 13813 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 16:47:42] CVMFS is ok
[2026-03-30 16:47:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 16:47:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 16:47:42] Further information can be found at the LHC@home message board.
[2026-03-30 16:47:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 16:47:42] Checking for apptainer binary...
[2026-03-30 16:47:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 16:47:42] Running /usr/bin/apptainer --version
[2026-03-30 16:47:42] apptainer version 1.4.1-1.1
[2026-03-30 16:47:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 16:47:42] thA315a
[2026-03-30 16:47:42] apptainer works
[2026-03-30 16:47:42] Set ATHENA_PROC_NUMBER=4
[2026-03-30 16:47:42] Set ATHENA_CORE_NUMBER=4
[2026-03-30 16:47:42] Starting ATLAS job with PandaID=7062256982
[2026-03-30 16:47:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 18:40:09]  *** The last 200 lines of the pilot log: ***
[2026-03-30 18:40:09] 2026-03-30 16:39:35,316 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7062256982/payload.stdout) since it has not been created yet
[2026-03-30 18:40:09] 2026-03-30 16:39:35,316 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 18:40:09] 2026-03-30 16:39:35,330 | INFO     | sufficient remaining disk space (229264850944 B)
[2026-03-30 18:40:09] 2026-03-30 16:39:35,331 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-30 18:40:09] 2026-03-30 16:39:35,331 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7062256982/HITS.49282301._000029.pool.root.1 since it does not exist
[2026-03-30 18:40:09] 2026-03-30 16:39:35,368 | INFO     | number of running child processes to parent process 1899774: 1
[2026-03-30 18:40:09] 2026-03-30 16:39:35,368 | INFO     | maximum number of monitored processes: 6
[2026-03-30 18:40:09] 2026-03-30 16:39:35,368 | INFO     | aborting job monitoring since job object (job id=7062256982) has expired
[2026-03-30 18:40:09] 2026-03-30 16:39:35,682 | INFO     | PID=1895268 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 18:40:09] 2026-03-30 16:39:35,781 | INFO     | --- collectZombieJob: --- 10, [1899774]
[2026-03-30 18:40:09] 2026-03-30 16:39:35,781 | INFO     | zombie collector waiting for pid 1899774
[2026-03-30 18:40:09] 2026-03-30 16:39:35,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 18:40:09] 2026-03-30 16:39:35,781 | INFO     | collected zombie processes
[2026-03-30 18:40:09] 2026-03-30 16:39:35,781 | INFO     | will attempt to kill all subprocesses of pid=1899774
[2026-03-30 18:40:09] 2026-03-30 16:39:35,822 | INFO     | process IDs to be killed: [1899774] (in reverse order)
[2026-03-30 18:40:09] 2026-03-30 16:39:35,853 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 18:40:09] 2026-03-30 16:39:35,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 18:40:09] 2026-03-30 16:39:35,855 | INFO     | did not find any defunct processes belonging to 1899774
[2026-03-30 18:40:09] 2026-03-30 16:39:35,856 | INFO     | did not find any defunct processes belonging to 1899774
[2026-03-30 18:40:09] 2026-03-30 16:39:35,856 | INFO     | ready for new job
[2026-03-30 18:40:09] 2026-03-30 16:39:35,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 18:40:09] 2026-03-30 16:39:35,857 | INFO     | **************************************
[2026-03-30 18:40:09] 2026-03-30 16:39:35,857 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 18:40:09] 2026-03-30 16:39:35,857 | INFO     | **************************************
[2026-03-30 18:40:09] 2026-03-30 16:39:35,857 | INFO     | 
[2026-03-30 18:40:09] 2026-03-30 16:39:35,858 | INFO     | architecture information:
[2026-03-30 18:40:09] 2026-03-30 16:39:35,858 | INFO     | executing command: cat /etc/os-release
[2026-03-30 18:40:09] 2026-03-30 16:39:35,871 | INFO     | cat /etc/os-release:
[2026-03-30 18:40:09] NAME="CentOS Linux"
[2026-03-30 18:40:09] VERSION="7 (Core)"
[2026-03-30 18:40:09] ID="centos"
[2026-03-30 18:40:09] ID_LIKE="rhel fedora"
[2026-03-30 18:40:09] VERSION_ID="7"
[2026-03-30 18:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 18:40:09] ANSI_COLOR="0;31"
[2026-03-30 18:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 18:40:09] HOME_URL="https://www.centos.org/"
[2026-03-30 18:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 18:40:09] 
[2026-03-30 18:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 18:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 18:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 18:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 18:40:09] 
[2026-03-30 18:40:09] 2026-03-30 16:39:35,871 | INFO     | **************************************
[2026-03-30 18:40:09] 2026-03-30 16:39:36,375 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 18:40:09] 2026-03-30 16:39:36,392 | INFO     | sufficient remaining disk space (229265899520 B)
[2026-03-30 18:40:09] 2026-03-30 16:39:36,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | INFO     | update_server=False
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | INFO     | aborting loop
[2026-03-30 18:40:09] 2026-03-30 16:39:36,393 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 18:40:09] 2026-03-30 16:39:36,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 18:40:09] 2026-03-30 16:39:36,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 18:40:09] 2026-03-30 16:39:36,726 | INFO     | all data control threads have been joined
[2026-03-30 18:40:09] 2026-03-30 16:39:36,860 | INFO     | all payload control threads have been joined
[2026-03-30 18:40:09] 2026-03-30 16:39:37,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 18:40:09] 2026-03-30 16:39:37,398 | INFO     | [job] retrieve thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:37,399 | INFO     | [job] queue monitor thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:37,399 | INFO     | [job] job monitor thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:37,514 | INFO     | all job control threads have been joined
[2026-03-30 18:40:09] 2026-03-30 16:39:37,731 | INFO     | [data] control thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:37,814 | INFO     | [payload] validate_post thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:37,866 | INFO     | [payload] control thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,407 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,478 | INFO     | [job] validate thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,520 | INFO     | [job] control thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,575 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,643 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,788 | INFO     | [data] copytool_in thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:38,945 | INFO     | [payload] failed_post thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:39,294 | INFO     | [data] copytool_out thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:39,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 18:40:09] 2026-03-30 16:39:43,546 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:39:47,084 | INFO     | job.realtimelogging is not enabled
[2026-03-30 18:40:09] 2026-03-30 16:39:48,090 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 18:40:09] 2026-03-30 16:40:03,828 | INFO     | [monitor] cgroup control has ended
[2026-03-30 18:40:09] 2026-03-30 16:40:04,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597744838464)>', '<ExcThread(monitor, started 140596786210560)>']
[2026-03-30 18:40:09] 2026-03-30 16:40:04,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 18:40:09] 2026-03-30 16:40:04,543 | INFO     | [monitor] control thread has ended
[2026-03-30 18:40:09] 2026-03-30 16:40:09,076 | INFO     | all workflow threads have been joined
[2026-03-30 18:40:09] 2026-03-30 16:40:09,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 18:40:09] 2026-03-30 16:40:09,076 | INFO     | traces error code: 0
[2026-03-30 18:40:09] 2026-03-30 16:40:09,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 18:40:09] 2026-03-30 16:40:09,141 [wrapper] ==== pilot stdout END ====
[2026-03-30 18:40:09] 2026-03-30 16:40:09,145 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 18:40:09] 2026-03-30 16:40:09,149 [wrapper] pilotpid: 1895268
[2026-03-30 18:40:09] 2026-03-30 16:40:09,153 [wrapper] Pilot exit status: 0
[2026-03-30 18:40:09] 2026-03-30 16:40:09,164 [wrapper] pandaids: 7062256982
[2026-03-30 18:40:09] 2026-03-30 16:40:09,185 [wrapper] cleanup supervisor_pilot 1905432 1895269
[2026-03-30 18:40:09] 2026-03-30 16:40:09,189 [wrapper] Test setup, not cleaning
[2026-03-30 18:40:09] 2026-03-30 16:40:09,193 [wrapper] apfmon messages muted
[2026-03-30 18:40:09] 2026-03-30 16:40:09,196 [wrapper] ==== wrapper stdout END ====
[2026-03-30 18:40:09] 2026-03-30 16:40:09,200 [wrapper] ==== wrapper stderr END ====
[2026-03-30 18:40:09]  *** Error codes and diagnostics ***
[2026-03-30 18:40:09]     "exeErrorCode": 0,
[2026-03-30 18:40:09]     "exeErrorDiag": "",
[2026-03-30 18:40:09]     "pilotErrorCode": 0,
[2026-03-30 18:40:09]     "pilotErrorDiag": "",
[2026-03-30 18:40:09]  *** Listing of results directory ***
[2026-03-30 18:40:09] total 461860
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc    585013 Mar 22 20:50 pilot3.tar.gz
[2026-03-30 18:40:09] -rwx------ 1 boinc boinc     36322 Mar 22 20:52 runpilot2-wrapper.sh
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc      5111 Mar 22 20:55 queuedata.json
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc       100 Mar 30 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 18:40:09] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 16:47 run_atlas
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc       105 Mar 30 16:47 job.xml
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc 253261465 Mar 30 16:47 EVNT.49141143._000001.pool.root.1
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc    597534 Mar 30 16:47 input.tar.gz
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc     15845 Mar 30 16:47 start_atlas.sh
[2026-03-30 18:40:09] drwxrwx--x 2 boinc boinc      4096 Mar 30 16:47 shared
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc         0 Mar 30 16:47 boinc_setup_complete
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc      6370 Mar 30 16:47 init_data.xml
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc         0 Mar 30 16:47 boinc_lockfile
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc      2591 Mar 30 16:47 pandaJob.out
[2026-03-30 18:40:09] -rw------- 1 boinc boinc   1003977 Mar 30 16:47 agis_schedconf.cvmfs.json
[2026-03-30 18:40:09] -rw------- 1 boinc boinc   1511579 Mar 30 16:47 agis_ddmendpoints.agis.ALL.json
[2026-03-30 18:40:09] -rw------- 1 boinc boinc       427 Mar 30 16:47 workernode_map.json
[2026-03-30 18:40:09] drwx------ 5 boinc boinc      4096 Mar 30 16:47 pilot3
[2026-03-30 18:40:09] -rw------- 1 boinc boinc 213259402 Mar 30 18:39 HITS.49282301._000029.pool.root.1
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc       529 Mar 30 18:39 boinc_task_state.xml
[2026-03-30 18:40:09] -rw------- 1 boinc boinc        95 Mar 30 18:39 pilot_heartbeat.json
[2026-03-30 18:40:09] -rw------- 1 boinc boinc      1017 Mar 30 18:39 memory_monitor_summary.json
[2026-03-30 18:40:09] -rw------- 1 boinc boinc    281787 Mar 30 18:39 log.49282301._000029.job.log.tgz.1
[2026-03-30 18:40:09] -rw------- 1 boinc boinc      6295 Mar 30 18:39 heartbeat.json
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc      8192 Mar 30 18:39 boinc_mmap_file
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc        27 Mar 30 18:39 wrapper_checkpoint.txt
[2026-03-30 18:40:09] -rw------- 1 boinc boinc      4624 Mar 30 18:40 pilotlog.txt
[2026-03-30 18:40:09] -rw------- 1 boinc boinc    966305 Mar 30 18:40 log.49282301._000029.job.log.1
[2026-03-30 18:40:09] -rw------- 1 boinc boinc       357 Mar 30 18:40 output.list
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc       620 Mar 30 18:40 runtime_log
[2026-03-30 18:40:09] -rw------- 1 boinc boinc   1269760 Mar 30 18:40 result.tar.gz
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc      8901 Mar 30 18:40 runtime_log.err
[2026-03-30 18:40:09] -rw------- 1 boinc boinc       659 Mar 30 18:40 N9hLDmO1dO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDT6LDmB7U3To.diag
[2026-03-30 18:40:09] -rw-r--r-- 1 boinc boinc     11966 Mar 30 18:40 stderr.txt
[2026-03-30 18:40:09] HITS file was successfully produced:
[2026-03-30 18:40:09] -rw------- 1 boinc boinc 213259402 Mar 30 18:39 shared/HITS.pool.root.1
[2026-03-30 18:40:09]  *** Contents of shared directory: ***
[2026-03-30 18:40:09] total 457440
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc 253261465 Mar 30 16:47 ATLAS.root_0
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc    597534 Mar 30 16:47 input.tar.gz
[2026-03-30 18:40:09] -rw-r--r-- 2 boinc boinc     15845 Mar 30 16:47 start_atlas.sh
[2026-03-30 18:40:09] -rw------- 1 boinc boinc 213259402 Mar 30 18:39 HITS.pool.root.1
[2026-03-30 18:40:09] -rw------- 1 boinc boinc   1269760 Mar 30 18:40 result.tar.gz
18:40:10 (1891149): run_atlas exited; CPU time 25343.845775
18:40:10 (1891149): called boinc_finish(0)

</stderr_txt>
]]>

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