Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
14:36:35 (457052): wrapper (7.7.26015): starting
14:36:35 (457052): wrapper: running run_atlas (--nthreads 12)
[2026-04-03 14:36:35] Arguments: --nthreads 12
[2026-04-03 14:36:35] Threads: 12
[2026-04-03 14:36:35] Checking for CVMFS
[2026-04-03 14:36:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-03 14:36:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-03 14:36:37] Running cvmfs_config stat atlas.cern.ch
[2026-04-03 14:36:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-03 14:36:38] 2.13.3.0 1085729 13455 48232 158044 0 49 4039470 4096000 912 130560 0 1438343 99.957 493516 3612 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-03 14:36:38] CVMFS is ok
[2026-04-03 14:36:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-03 14:36:38] Checking for apptainer binary...
[2026-04-03 14:36:38] apptainer is not installed, using version from CVMFS
[2026-04-03 14:36:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-03 14:36:39] i3220
[2026-04-03 14:36:39] apptainer works
[2026-04-03 14:36:39] Set ATHENA_PROC_NUMBER=12
[2026-04-03 14:36:39] Set ATHENA_CORE_NUMBER=12
[2026-04-03 14:36:39] Starting ATLAS job with PandaID=7071898601
[2026-04-03 14:36:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-04 01:32:52]  *** The last 200 lines of the pilot log: ***
[2026-04-04 01:32:52] 2026-04-04 01:31:44,039 | INFO     | total number of processed events: 400 (read)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,054 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-7071898601/memory_monitor_summary.json (trf name=prmon)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,055 | INFO     | extracted standard info from prmon json
[2026-04-04 01:32:52] 2026-04-04 01:31:44,055 | INFO     | extracted standard memory fields from prmon json
[2026-04-04 01:32:52] 2026-04-04 01:31:44,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-04 01:32:52] 2026-04-04 01:31:44,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-04 01:32:52] 2026-04-04 01:31:44,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-04 01:32:52] 2026-04-04 01:31:44,111 | INFO     | fitting pss+swap vs Time
[2026-04-04 01:32:52] 2026-04-04 01:31:44,112 | INFO     | sum of square deviations: 82434816315.81999
[2026-04-04 01:32:52] 2026-04-04 01:31:44,161 | INFO     | sum of deviations: 193593806527.04996
[2026-04-04 01:32:52] 2026-04-04 01:31:44,161 | INFO     | mean x: 1775246695.1586313
[2026-04-04 01:32:52] 2026-04-04 01:31:44,171 | INFO     | mean y: 2652254.7838258166
[2026-04-04 01:32:52] 2026-04-04 01:31:44,171 | INFO     | intersect: -4166420724.327916
[2026-04-04 01:32:52] 2026-04-04 01:31:44,172 | INFO     | chi2: 5.047477737397077
[2026-04-04 01:32:52] 2026-04-04 01:31:44,173 | INFO     | sum of square deviations: 80526709323.19283
[2026-04-04 01:32:52] 2026-04-04 01:31:44,219 | INFO     | sum of deviations: 279731663884.62537
[2026-04-04 01:32:52] 2026-04-04 01:31:44,219 | INFO     | mean x: 1775246542.6598747
[2026-04-04 01:32:52] 2026-04-04 01:31:44,219 | INFO     | mean y: 2659106.0673981193
[2026-04-04 01:32:52] 2026-04-04 01:31:44,219 | INFO     | intersect: -6164147824.917544
[2026-04-04 01:32:52] 2026-04-04 01:31:44,220 | INFO     | chi2: 3.638206839373113
[2026-04-04 01:32:52] 2026-04-04 01:31:44,220 | INFO     | current chi2=3.638206839373113 (change=27.920299431587154 %)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,231 | INFO     | sum of square deviations: 78648277305.56407
[2026-04-04 01:32:52] 2026-04-04 01:31:44,267 | INFO     | sum of deviations: 277292827190.0716
[2026-04-04 01:32:52] 2026-04-04 01:31:44,267 | INFO     | mean x: 1775246390.1611373
[2026-04-04 01:32:52] 2026-04-04 01:31:44,277 | INFO     | mean y: 2658908.06793049
[2026-04-04 01:32:52] 2026-04-04 01:31:44,278 | INFO     | intersect: -6256385884.1557
[2026-04-04 01:32:52] 2026-04-04 01:31:44,278 | INFO     | chi2: 3.6386429248748664
[2026-04-04 01:32:52] 2026-04-04 01:31:44,279 | INFO     | current chi2=3.6386429248748664 (change=-0.011986275684877675 %)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,279 | INFO     | right removable region: 632
[2026-04-04 01:32:52] 2026-04-04 01:31:44,280 | INFO     | sum of square deviations: 80526647103.1928
[2026-04-04 01:32:52] 2026-04-04 01:31:44,325 | INFO     | sum of deviations: 6971276853.822884
[2026-04-04 01:32:52] 2026-04-04 01:31:44,325 | INFO     | mean x: 1775246847.6598747
[2026-04-04 01:32:52] 2026-04-04 01:31:44,325 | INFO     | mean y: 2667156.0360501567
[2026-04-04 01:32:52] 2026-04-04 01:31:44,329 | INFO     | intersect: -151017837.74065757
[2026-04-04 01:32:52] 2026-04-04 01:31:44,336 | INFO     | chi2: 2.296231112962592
[2026-04-04 01:32:52] 2026-04-04 01:31:44,337 | INFO     | current chi2=2.296231112962592 (change=54.5073553083816 %)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,338 | INFO     | sum of square deviations: 78648152865.56407
[2026-04-04 01:32:52] 2026-04-04 01:31:44,386 | INFO     | sum of deviations: -72256050212.25119
[2026-04-04 01:32:52] 2026-04-04 01:31:44,386 | INFO     | mean x: 1775247000.1611373
[2026-04-04 01:32:52] 2026-04-04 01:31:44,387 | INFO     | mean y: 2673577.737756714
[2026-04-04 01:32:52] 2026-04-04 01:31:44,387 | INFO     | intersect: 1633637964.1747992
[2026-04-04 01:32:52] 2026-04-04 01:31:44,388 | INFO     | chi2: 1.7496513092005186
[2026-04-04 01:32:52] 2026-04-04 01:31:44,388 | INFO     | current chi2=1.7496513092005186 (change=23.803344562162877 %)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,388 | INFO     | left removable region: 20
[2026-04-04 01:32:52] 2026-04-04 01:31:44,400 | INFO     | sum of square deviations: 71077416207.99997
[2026-04-04 01:32:52] 2026-04-04 01:31:44,435 | INFO     | sum of deviations: -33000863765.33326
[2026-04-04 01:32:52] 2026-04-04 01:31:44,435 | INFO     | mean x: 1775246969.6666667
[2026-04-04 01:32:52] 2026-04-04 01:31:44,435 | INFO     | mean y: 2684722.6944444445
[2026-04-04 01:32:52] 2026-04-04 01:31:44,436 | INFO     | intersect: 826922385.250283
[2026-04-04 01:32:52] 2026-04-04 01:31:44,445 | INFO     | chi2: 0.20394484520218392
[2026-04-04 01:32:52] 2026-04-04 01:31:44,446 | INFO     | current memory leak: -0.46 B/s (using 612 data points, chi2=0.20)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,447 | INFO     | could have reported an average CPU frequency of 3299 MHz (25 samples)
[2026-04-04 01:32:52] 2026-04-04 01:31:44,447 | INFO     | ..............................
[2026-04-04 01:32:52] 2026-04-04 01:31:44,447 | INFO     | . Timing measurements:
[2026-04-04 01:32:52] 2026-04-04 01:31:44,447 | INFO     | . get job = 0 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,447 | INFO     | . initial setup = 20 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | . payload setup = 32 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | . stage-in = 0 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | . payload execution = 39191 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | . stage-out = 4 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | . log creation = 1 s
[2026-04-04 01:32:52] 2026-04-04 01:31:44,448 | INFO     | ..............................
[2026-04-04 01:32:52] 2026-04-04 01:31:44,901 | INFO     | time since job start (39244s) is within the limit (345600.0s)
[2026-04-04 01:32:52] 2026-04-04 01:31:45,045 | INFO     | 
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | job summary report
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | --------------------------------------------------
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | PanDA job id: 7071898601
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | task id: 49263200
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | errors: (none)
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | pilot state: finished 
[2026-04-04 01:32:52] 2026-04-04 01:31:45,046 | INFO     | transexitcode: 0
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | exeerrorcode: 0
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | exeerrordiag: 
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | exitcode: 0
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | exitmsg: OK
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | cpuconsumptiontime: 69909 s
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | nevents: 400
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | neventsw: 0
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | pid: 482790
[2026-04-04 01:32:52] 2026-04-04 01:31:45,047 | INFO     | pgrp: 482790
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | corecount: 12
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | event service: False
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | sizes: {0: 2279158, 1: 2279866, 2: 2279951, 3: 2280355, 4: 2280355, 39229: 2324433, 39235: 2333477, 39237: 2333533, 39240: 2333791}
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | --------------------------------------------------
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | 
[2026-04-04 01:32:52] 2026-04-04 01:31:45,048 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-04-04 01:32:52] 2026-04-04 01:31:45,125 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,125 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,125 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,138 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-04 01:32:52] 2026-04-04 01:31:45,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,138 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-04 01:32:52] 2026-04-04 01:31:45,138 | INFO     | job 7071898601 has completed (purged errors)
[2026-04-04 01:32:52] 2026-04-04 01:31:45,138 | INFO     | overall cleanup function is called
[2026-04-04 01:32:52] 2026-04-04 01:31:46,164 | INFO     | --- collectZombieJob: --- 10, [482790]
[2026-04-04 01:32:52] 2026-04-04 01:31:46,164 | INFO     | zombie collector waiting for pid 482790
[2026-04-04 01:32:52] 2026-04-04 01:31:46,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-04 01:32:52] 2026-04-04 01:31:46,167 | INFO     | collected zombie processes
[2026-04-04 01:32:52] 2026-04-04 01:31:46,167 | INFO     | will attempt to kill all subprocesses of pid=482790
[2026-04-04 01:32:52] 2026-04-04 01:31:46,533 | INFO     | process IDs to be killed: [482790] (in reverse order)
[2026-04-04 01:32:52] 2026-04-04 01:31:46,653 | WARNING  | found no corresponding commands to process id(s)
[2026-04-04 01:32:52] 2026-04-04 01:31:46,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-04 01:32:52] 2026-04-04 01:31:46,663 | INFO     | did not find any defunct processes belonging to 482790
[2026-04-04 01:32:52] 2026-04-04 01:31:46,676 | INFO     | did not find any defunct processes belonging to 482790
[2026-04-04 01:32:52] 2026-04-04 01:31:46,676 | INFO     | ready for new job
[2026-04-04 01:32:52] 2026-04-04 01:31:46,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-04 01:32:52] 2026-04-04 01:31:46,688 | INFO     | **************************************
[2026-04-04 01:32:52] 2026-04-04 01:31:46,688 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-04 01:32:52] 2026-04-04 01:31:46,690 | INFO     | **************************************
[2026-04-04 01:32:52] 2026-04-04 01:31:46,690 | INFO     | 
[2026-04-04 01:32:52] 2026-04-04 01:31:46,691 | INFO     | architecture information:
[2026-04-04 01:32:52] 2026-04-04 01:31:46,693 | INFO     | executing command: cat /etc/os-release
[2026-04-04 01:32:52] 2026-04-04 01:31:46,735 | INFO     | cat /etc/os-release:
[2026-04-04 01:32:52] NAME="CentOS Linux"
[2026-04-04 01:32:52] VERSION="7 (Core)"
[2026-04-04 01:32:52] ID="centos"
[2026-04-04 01:32:52] ID_LIKE="rhel fedora"
[2026-04-04 01:32:52] VERSION_ID="7"
[2026-04-04 01:32:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-04 01:32:52] ANSI_COLOR="0;31"
[2026-04-04 01:32:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-04 01:32:52] HOME_URL="https://www.centos.org/"
[2026-04-04 01:32:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-04 01:32:52] 
[2026-04-04 01:32:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-04 01:32:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-04 01:32:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-04 01:32:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-04 01:32:52] 
[2026-04-04 01:32:52] 2026-04-04 01:31:46,736 | INFO     | **************************************
[2026-04-04 01:32:52] 2026-04-04 01:31:47,241 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-04-04 01:32:52] 2026-04-04 01:31:47,300 | INFO     | sufficient remaining disk space (264069185536 B)
[2026-04-04 01:32:52] 2026-04-04 01:31:47,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-04 01:32:52] 2026-04-04 01:31:47,301 | INFO     | current server update state: UPDATING_FINAL
[2026-04-04 01:32:52] 2026-04-04 01:31:47,301 | INFO     | update_server=False
[2026-04-04 01:32:52] 2026-04-04 01:31:47,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-04 01:32:52] 2026-04-04 01:31:47,351 | INFO     | all job control threads have been joined
[2026-04-04 01:32:52] 2026-04-04 01:31:47,442 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-04 01:32:52] 2026-04-04 01:31:47,442 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-04 01:32:52] 2026-04-04 01:31:47,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-04 01:32:52] 2026-04-04 01:31:47,442 | INFO     | will abort loop
[2026-04-04 01:32:52] 2026-04-04 01:31:48,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-04 01:32:52] 2026-04-04 01:31:48,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-04 01:32:52] 2026-04-04 01:31:48,129 | INFO     | all payload control threads have been joined
[2026-04-04 01:32:52] 2026-04-04 01:31:48,311 | INFO     | all data control threads have been joined
[2026-04-04 01:32:52] 2026-04-04 01:31:48,312 | INFO     | [payload] validate_post thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,312 | INFO     | [job] retrieve thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,356 | INFO     | [job] control thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,407 | INFO     | [payload] execute_payloads thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,408 | INFO     | [payload] validate_pre thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,448 | INFO     | [job] job monitor thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,539 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:48,556 | INFO     | [job] validate thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,109 | INFO     | [data] copytool_in thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,135 | INFO     | [payload] control thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,316 | INFO     | [data] control thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,395 | INFO     | [job] create_data_payload thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,414 | INFO     | [payload] failed_post thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:49,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-04 01:32:52] 2026-04-04 01:31:50,075 | INFO     | [data] copytool_out thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:51,003 | INFO     | [job] queue monitor thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:31:52,053 | INFO     | [data] queue_monitor thread has finished
[2026-04-04 01:32:52] 2026-04-04 01:32:18,404 | INFO     | PID=467552 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-04 01:32:52] 2026-04-04 01:32:18,415 | INFO     | .. there are 2 such processes running
[2026-04-04 01:32:52] 2026-04-04 01:32:18,415 | INFO     | found 0 job(s) in 20 queues
[2026-04-04 01:32:52] 2026-04-04 01:32:18,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-04 01:32:52] 2026-04-04 01:32:18,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-04 01:32:52] 2026-04-04 01:32:45,287 | INFO     | [monitor] cgroup control has ended
[2026-04-04 01:32:52] 2026-04-04 01:32:46,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129477870790464)>', '<ExcThread(monitor, started 129477518534400)>']
[2026-04-04 01:32:52] 2026-04-04 01:32:46,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-04 01:32:52] 2026-04-04 01:32:46,569 | INFO     | [monitor] control thread has ended
[2026-04-04 01:32:52] 2026-04-04 01:32:51,488 | INFO     | all workflow threads have been joined
[2026-04-04 01:32:52] 2026-04-04 01:32:51,488 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-04 01:32:52] 2026-04-04 01:32:51,489 | INFO     | traces error code: 0
[2026-04-04 01:32:52] 2026-04-04 01:32:51,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-04 01:32:52] 2026-04-04 01:32:52,004 [wrapper] ==== pilot stdout END ====
[2026-04-04 01:32:52] 2026-04-04 01:32:52,017 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-04 01:32:52] 2026-04-04 01:32:52,027 [wrapper] pilotpid: 467552
[2026-04-04 01:32:52] 2026-04-04 01:32:52,039 [wrapper] Pilot exit status: 0
[2026-04-04 01:32:52] 2026-04-04 01:32:52,116 [wrapper] pandaids: 7071898601
[2026-04-04 01:32:52] 2026-04-04 01:32:52,183 [wrapper] cleanup supervisor_pilot  717251 467553
[2026-04-04 01:32:52] 2026-04-04 01:32:52,192 [wrapper] Test setup, not cleaning
[2026-04-04 01:32:52] 2026-04-04 01:32:52,204 [wrapper] apfmon messages muted
[2026-04-04 01:32:52] 2026-04-04 01:32:52,219 [wrapper] ==== wrapper stdout END ====
[2026-04-04 01:32:52] 2026-04-04 01:32:52,227 [wrapper] ==== wrapper stderr END ====
[2026-04-04 01:32:52]  *** Error codes and diagnostics ***
[2026-04-04 01:32:52]     "exeErrorCode": 0,
[2026-04-04 01:32:52]     "exeErrorDiag": "",
[2026-04-04 01:32:52]     "pilotErrorCode": 0,
[2026-04-04 01:32:52]     "pilotErrorDiag": "",
[2026-04-04 01:32:52]  *** Listing of results directory ***
[2026-04-04 01:32:52] total 423596
[2026-04-04 01:32:52] -rw-r--r-- 1 boinc boinc    585013 M&#195;&#164;r 29 19:59 pilot3.tar.gz
[2026-04-04 01:32:52] -rw-r--r-- 1 boinc boinc      5118 M&#195;&#164;r 29 20:00 queuedata.json
[2026-04-04 01:32:52] -rwx------ 1 boinc boinc     36322 M&#195;&#164;r 29 20:00 runpilot2-wrapper.sh
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc       100 Apr  3 14:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-04 01:32:52] -rwxr-xr-x 1 boinc boinc      7986 Apr  3 14:36 run_atlas
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc       105 Apr  3 14:36 job.xml
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc 222292151 Apr  3 14:36 EVNT.49263198._000176.pool.root.1
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc      9275 Apr  3 14:36 init_data.xml
[2026-04-04 01:32:52] drwxrwx--x 2 boinc boinc      4096 Apr  3 14:36 shared
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc    597544 Apr  3 14:36 input.tar.gz
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc     15845 Apr  3 14:36 start_atlas.sh
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc         0 Apr  3 14:36 boinc_lockfile
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc      2573 Apr  3 14:36 pandaJob.out
[2026-04-04 01:32:52] -rw------- 1 boinc boinc   1005111 Apr  3 14:37 agis_schedconf.cvmfs.json
[2026-04-04 01:32:52] -rw------- 1 boinc boinc       413 Apr  3 14:37 workernode_map.json
[2026-04-04 01:32:52] drwx------ 5 boinc boinc      4096 Apr  3 14:37 pilot3
[2026-04-04 01:32:52] -rw------- 1 boinc boinc 194845396 Apr  4 01:29 HITS.49263200._004380.pool.root.1
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc       530 Apr  4 01:29 boinc_task_state.xml
[2026-04-04 01:32:52] -rw------- 1 boinc boinc      1021 Apr  4 01:31 memory_monitor_summary.json
[2026-04-04 01:32:52] -rw------- 1 boinc boinc   1511579 Apr  4 01:31 agis_ddmendpoints.agis.ALL.json
[2026-04-04 01:32:52] -rw------- 1 boinc boinc    854022 Apr  4 01:31 log.49263200._004380.job.log.tgz.1
[2026-04-04 01:32:52] -rw------- 1 boinc boinc        95 Apr  4 01:31 pilot_heartbeat.json
[2026-04-04 01:32:52] -rw------- 1 boinc boinc      6296 Apr  4 01:31 heartbeat.json
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc      8192 Apr  4 01:32 boinc_mmap_file
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc        28 Apr  4 01:32 wrapper_checkpoint.txt
[2026-04-04 01:32:52] -rw------- 1 boinc boinc      5028 Apr  4 01:32 pilotlog.txt
[2026-04-04 01:32:52] -rw------- 1 boinc boinc   5487103 Apr  4 01:32 log.49263200._004380.job.log.1
[2026-04-04 01:32:52] -rw------- 1 boinc boinc       357 Apr  4 01:32 output.list
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc       620 Apr  4 01:32 runtime_log
[2026-04-04 01:32:52] -rw------- 1 boinc boinc   6359040 Apr  4 01:32 result.tar.gz
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc      9152 Apr  4 01:32 runtime_log.err
[2026-04-04 01:32:52] -rw------- 1 boinc boinc       652 Apr  4 01:32 694MDmKUBR9n9Rq4apOajLDm4fhM0noT9bVoINGKDmjhNKDmzF9Ern.diag
[2026-04-04 01:32:52] -rw-rw-r-- 1 boinc boinc     20946 Apr  4 01:32 stderr.txt
[2026-04-04 01:32:52] HITS file was successfully produced:
[2026-04-04 01:32:52] -rw------- 1 boinc boinc 194845396 Apr  4 01:29 shared/HITS.pool.root.1
[2026-04-04 01:32:52]  *** Contents of shared directory: ***
[2026-04-04 01:32:52] total 414184
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc 222292151 Apr  3 14:36 ATLAS.root_0
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc    597544 Apr  3 14:36 input.tar.gz
[2026-04-04 01:32:52] -rw-r--r-- 2 boinc boinc     15845 Apr  3 14:36 start_atlas.sh
[2026-04-04 01:32:52] -rw------- 1 boinc boinc 194845396 Apr  4 01:29 HITS.pool.root.1
[2026-04-04 01:32:52] -rw------- 1 boinc boinc   6359040 Apr  4 01:32 result.tar.gz
01:32:53 (457052): run_atlas exited; CPU time 70277.471841
01:32:53 (457052): called boinc_finish(0)

</stderr_txt>
]]>

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