Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:30:33 (2038231): wrapper (7.7.26015): starting
17:30:33 (2038231): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 17:30:33] Arguments: --nthreads 4
[2026-03-30 17:30:33] Threads: 4
[2026-03-30 17:30:33] Checking for CVMFS
[2026-03-30 17:30:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 17:30:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 17:30:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 17:30:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 17:30:33] 2.9.2.0 1501249 3763 90596 157886 0 49 32295691 36864000 0 130560 0 1829192 99.986 139415 21005 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 17:30:33] CVMFS is ok
[2026-03-30 17:30:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 17:30:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 17:30:33] Further information can be found at the LHC@home message board.
[2026-03-30 17:30:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 17:30:33] Checking for apptainer binary...
[2026-03-30 17:30:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 17:30:33] Running /usr/bin/apptainer --version
[2026-03-30 17:30:33] apptainer version 1.4.1-1.1
[2026-03-30 17:30:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 17:30:33] thA314
[2026-03-30 17:30:33] apptainer works
[2026-03-30 17:30:33] Set ATHENA_PROC_NUMBER=4
[2026-03-30 17:30:33] Set ATHENA_CORE_NUMBER=4
[2026-03-30 17:30:33] Starting ATLAS job with PandaID=7071868548
[2026-03-30 17:30:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 18:44:57]  *** The last 200 lines of the pilot log: ***
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | job 7071868548 has completed (purged errors)
[2026-03-30 18:44:57] 2026-03-30 16:44:28,145 | INFO     | overall cleanup function is called
[2026-03-30 18:44:57] 2026-03-30 16:44:29,152 | INFO     | --- collectZombieJob: --- 10, [2046903]
[2026-03-30 18:44:57] 2026-03-30 16:44:29,152 | INFO     | zombie collector waiting for pid 2046903
[2026-03-30 18:44:57] 2026-03-30 16:44:29,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 18:44:57] 2026-03-30 16:44:29,152 | INFO     | collected zombie processes
[2026-03-30 18:44:57] 2026-03-30 16:44:29,152 | INFO     | will attempt to kill all subprocesses of pid=2046903
[2026-03-30 18:44:57] 2026-03-30 16:44:29,198 | INFO     | process IDs to be killed: [2046903] (in reverse order)
[2026-03-30 18:44:57] 2026-03-30 16:44:29,235 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 18:44:57] 2026-03-30 16:44:29,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 18:44:57] 2026-03-30 16:44:29,237 | INFO     | did not find any defunct processes belonging to 2046903
[2026-03-30 18:44:57] 2026-03-30 16:44:29,239 | INFO     | did not find any defunct processes belonging to 2046903
[2026-03-30 18:44:57] 2026-03-30 16:44:29,239 | INFO     | ready for new job
[2026-03-30 18:44:57] 2026-03-30 16:44:29,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 18:44:57] 2026-03-30 16:44:29,240 | INFO     | **************************************
[2026-03-30 18:44:57] 2026-03-30 16:44:29,240 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 18:44:57] 2026-03-30 16:44:29,240 | INFO     | **************************************
[2026-03-30 18:44:57] 2026-03-30 16:44:29,240 | INFO     | 
[2026-03-30 18:44:57] 2026-03-30 16:44:29,240 | INFO     | architecture information:
[2026-03-30 18:44:57] 2026-03-30 16:44:29,241 | INFO     | executing command: cat /etc/os-release
[2026-03-30 18:44:57] 2026-03-30 16:44:29,256 | INFO     | cat /etc/os-release:
[2026-03-30 18:44:57] NAME="CentOS Linux"
[2026-03-30 18:44:57] VERSION="7 (Core)"
[2026-03-30 18:44:57] ID="centos"
[2026-03-30 18:44:57] ID_LIKE="rhel fedora"
[2026-03-30 18:44:57] VERSION_ID="7"
[2026-03-30 18:44:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 18:44:57] ANSI_COLOR="0;31"
[2026-03-30 18:44:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 18:44:57] HOME_URL="https://www.centos.org/"
[2026-03-30 18:44:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 18:44:57] 
[2026-03-30 18:44:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 18:44:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 18:44:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 18:44:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 18:44:57] 
[2026-03-30 18:44:57] 2026-03-30 16:44:29,256 | INFO     | **************************************
[2026-03-30 18:44:57] 2026-03-30 16:44:29,759 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 18:44:57] 2026-03-30 16:44:29,777 | INFO     | sufficient remaining disk space (226732539904 B)
[2026-03-30 18:44:57] 2026-03-30 16:44:29,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | INFO     | update_server=False
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | INFO     | aborting loop
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 18:44:57] 2026-03-30 16:44:29,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 18:44:57] 2026-03-30 16:44:29,808 | INFO     | all data control threads have been joined
[2026-03-30 18:44:57] 2026-03-30 16:44:29,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 18:44:57] 2026-03-30 16:44:30,157 | INFO     | all payload control threads have been joined
[2026-03-30 18:44:57] 2026-03-30 16:44:30,629 | INFO     | all job control threads have been joined
[2026-03-30 18:44:57] 2026-03-30 16:44:30,783 | INFO     | [job] retrieve thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:30,784 | INFO     | [job] queue monitor thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:30,784 | INFO     | [job] job monitor thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:30,799 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:30,811 | INFO     | [data] control thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:30,911 | INFO     | [payload] failed_post thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:31,041 | INFO     | [data] copytool_in thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:31,162 | INFO     | [payload] control thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:31,435 | INFO     | [payload] validate_post thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:31,635 | INFO     | [job] control thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:31,933 | INFO     | [data] copytool_out thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:32,231 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:32,231 | INFO     | [job] validate thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:32,247 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:32,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 18:44:57] 2026-03-30 16:44:36,746 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:39,880 | INFO     | job.realtimelogging is not enabled
[2026-03-30 18:44:57] 2026-03-30 16:44:40,886 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 18:44:57] 2026-03-30 16:44:51,788 | INFO     | [monitor] cgroup control has ended
[2026-03-30 18:44:57] 2026-03-30 16:44:51,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088565266240)>', '<ExcThread(monitor, started 140087396394752)>']
[2026-03-30 18:44:57] 2026-03-30 16:44:52,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 18:44:57] 2026-03-30 16:44:52,901 | INFO     | [monitor] control thread has ended
[2026-03-30 18:44:57] 2026-03-30 16:44:56,968 | INFO     | all workflow threads have been joined
[2026-03-30 18:44:57] 2026-03-30 16:44:56,969 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 18:44:57] 2026-03-30 16:44:56,969 | INFO     | traces error code: 0
[2026-03-30 18:44:57] 2026-03-30 16:44:56,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 18:44:57] 2026-03-30 16:44:57,046 [wrapper] ==== pilot stdout END ====
[2026-03-30 18:44:57] 2026-03-30 16:44:57,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 18:44:57] 2026-03-30 16:44:57,055 [wrapper] pilotpid: 2042390
[2026-03-30 18:44:57] 2026-03-30 16:44:57,060 [wrapper] Pilot exit status: 0
[2026-03-30 18:44:57] 2026-03-30 16:44:57,072 [wrapper] pandaids: 7071868548
[2026-03-30 18:44:57] 2026-03-30 16:44:57,095 [wrapper] cleanup supervisor_pilot 2052782 2042391
[2026-03-30 18:44:57] 2026-03-30 16:44:57,099 [wrapper] Test setup, not cleaning
[2026-03-30 18:44:57] 2026-03-30 16:44:57,103 [wrapper] apfmon messages muted
[2026-03-30 18:44:57] 2026-03-30 16:44:57,107 [wrapper] ==== wrapper stdout END ====
[2026-03-30 18:44:57] 2026-03-30 16:44:57,110 [wrapper] ==== wrapper stderr END ====
[2026-03-30 18:44:57]  *** Error codes and diagnostics ***
[2026-03-30 18:44:57]     "exeErrorCode": 0,
[2026-03-30 18:44:57]     "exeErrorDiag": "",
[2026-03-30 18:44:57]     "pilotErrorCode": 0,
[2026-03-30 18:44:57]     "pilotErrorDiag": "",
[2026-03-30 18:44:57]  *** Listing of results directory ***
[2026-03-30 18:44:57] total 415560
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc    585013 Mar 29 21:59 pilot3.tar.gz
[2026-03-30 18:44:57] -rwx------ 1 boinc boinc     36322 Mar 29 21:59 runpilot2-wrapper.sh
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc      5118 Mar 29 22:00 queuedata.json
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc       100 Mar 30 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 18:44:57] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 17:30 run_atlas
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc       105 Mar 30 17:30 job.xml
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc 222241242 Mar 30 17:30 EVNT.49263198._000162.pool.root.1
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc    597539 Mar 30 17:30 input.tar.gz
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc     15845 Mar 30 17:30 start_atlas.sh
[2026-03-30 18:44:57] drwxrwx--x 2 boinc boinc      4096 Mar 30 17:30 shared
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc         0 Mar 30 17:30 boinc_setup_complete
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc      6376 Mar 30 17:30 init_data.xml
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc         0 Mar 30 17:30 boinc_lockfile
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc      2572 Mar 30 17:30 pandaJob.out
[2026-03-30 18:44:57] -rw------- 1 boinc boinc   1004330 Mar 30 17:30 agis_schedconf.cvmfs.json
[2026-03-30 18:44:57] -rw------- 1 boinc boinc   1511579 Mar 30 17:30 agis_ddmendpoints.agis.ALL.json
[2026-03-30 18:44:57] -rw------- 1 boinc boinc       419 Mar 30 17:30 workernode_map.json
[2026-03-30 18:44:57] drwx------ 5 boinc boinc      4096 Mar 30 17:30 pilot3
[2026-03-30 18:44:57] -rw------- 1 boinc boinc 197561186 Mar 30 18:44 HITS.49263200._004028.pool.root.1
[2026-03-30 18:44:57] -rw------- 1 boinc boinc        95 Mar 30 18:44 pilot_heartbeat.json
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc       529 Mar 30 18:44 boinc_task_state.xml
[2026-03-30 18:44:57] -rw------- 1 boinc boinc      1032 Mar 30 18:44 memory_monitor_summary.json
[2026-03-30 18:44:57] -rw------- 1 boinc boinc    247456 Mar 30 18:44 log.49263200._004028.job.log.tgz.1
[2026-03-30 18:44:57] -rw------- 1 boinc boinc      6306 Mar 30 18:44 heartbeat.json
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc      8192 Mar 30 18:44 boinc_mmap_file
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc        27 Mar 30 18:44 wrapper_checkpoint.txt
[2026-03-30 18:44:57] -rw------- 1 boinc boinc      4624 Mar 30 18:44 pilotlog.txt
[2026-03-30 18:44:57] -rw------- 1 boinc boinc    653666 Mar 30 18:44 log.49263200._004028.job.log.1
[2026-03-30 18:44:57] -rw------- 1 boinc boinc       357 Mar 30 18:44 output.list
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc       620 Mar 30 18:44 runtime_log
[2026-03-30 18:44:57] -rw------- 1 boinc boinc    921600 Mar 30 18:44 result.tar.gz
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc      8896 Mar 30 18:44 runtime_log.err
[2026-03-30 18:44:57] -rw------- 1 boinc boinc       657 Mar 30 18:44 JtcNDmQTBR9n9Rq4apOajLDm4fhM0noT9bVoINGKDm2cNKDm1YUsjm.diag
[2026-03-30 18:44:57] -rw-r--r-- 1 boinc boinc     12465 Mar 30 18:44 stderr.txt
[2026-03-30 18:44:57] HITS file was successfully produced:
[2026-03-30 18:44:57] -rw------- 1 boinc boinc 197561186 Mar 30 18:44 shared/HITS.pool.root.1
[2026-03-30 18:44:57]  *** Contents of shared directory: ***
[2026-03-30 18:44:57] total 411472
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc 222241242 Mar 30 17:30 ATLAS.root_0
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc    597539 Mar 30 17:30 input.tar.gz
[2026-03-30 18:44:57] -rw-r--r-- 2 boinc boinc     15845 Mar 30 17:30 start_atlas.sh
[2026-03-30 18:44:57] -rw------- 1 boinc boinc 197561186 Mar 30 18:44 HITS.pool.root.1
[2026-03-30 18:44:57] -rw------- 1 boinc boinc    921600 Mar 30 18:44 result.tar.gz
18:44:59 (2038231): run_atlas exited; CPU time 16302.942969
18:44:59 (2038231): called boinc_finish(0)

</stderr_txt>
]]>

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