Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:03:27 (2785957): wrapper (7.7.26015): starting
11:03:27 (2785957): wrapper: running run_atlas (--nthreads 2)
[2026-03-30 11:03:27] Arguments: --nthreads 2
[2026-03-30 11:03:27] Threads: 2
[2026-03-30 11:03:27] Checking for CVMFS
[2026-03-30 11:03:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 11:03:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 11:03:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 11:03:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 11:03:27] 2.9.2.0 2553449 3417 56740 157873 2 50 34537426 36864001 0 130560 0 912305 99.975 128167 7527 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 11:03:27] CVMFS is ok
[2026-03-30 11:03:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 11:03:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 11:03:27] Further information can be found at the LHC@home message board.
[2026-03-30 11:03:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 11:03:27] Checking for apptainer binary...
[2026-03-30 11:03:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 11:03:27] Running /usr/bin/apptainer --version
[2026-03-30 11:03:27] apptainer version 1.4.1-1.1
[2026-03-30 11:03:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 11:03:27] thA334a
[2026-03-30 11:03:27] apptainer works
[2026-03-30 11:03:27] Set ATHENA_PROC_NUMBER=2
[2026-03-30 11:03:27] Set ATHENA_CORE_NUMBER=2
[2026-03-30 11:03:27] Starting ATLAS job with PandaID=7069741457
[2026-03-30 11:03:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 13:06:28]  *** The last 200 lines of the pilot log: ***
[2026-03-30 13:06:28] 2026-03-30 11:05:46,780 | INFO     | process IDs to be killed: [2794392] (in reverse order)
[2026-03-30 13:06:28] 2026-03-30 11:05:46,801 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 13:06:28] 2026-03-30 11:05:46,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 13:06:28] 2026-03-30 11:05:46,802 | INFO     | did not find any defunct processes belonging to 2794392
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | did not find any defunct processes belonging to 2794392
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | ready for new job
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | **************************************
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | **************************************
[2026-03-30 13:06:28] 2026-03-30 11:05:46,803 | INFO     | 
[2026-03-30 13:06:28] 2026-03-30 11:05:46,804 | INFO     | architecture information:
[2026-03-30 13:06:28] 2026-03-30 11:05:46,804 | INFO     | executing command: cat /etc/os-release
[2026-03-30 13:06:28] 2026-03-30 11:05:46,812 | INFO     | cat /etc/os-release:
[2026-03-30 13:06:28] NAME="CentOS Linux"
[2026-03-30 13:06:28] VERSION="7 (Core)"
[2026-03-30 13:06:28] ID="centos"
[2026-03-30 13:06:28] ID_LIKE="rhel fedora"
[2026-03-30 13:06:28] VERSION_ID="7"
[2026-03-30 13:06:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 13:06:28] ANSI_COLOR="0;31"
[2026-03-30 13:06:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 13:06:28] HOME_URL="https://www.centos.org/"
[2026-03-30 13:06:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 13:06:28] 
[2026-03-30 13:06:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 13:06:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 13:06:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 13:06:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 13:06:28] 
[2026-03-30 13:06:28] 2026-03-30 11:05:46,812 | INFO     | **************************************
[2026-03-30 13:06:28] 2026-03-30 11:05:47,316 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 13:06:28] 2026-03-30 11:05:47,328 | INFO     | sufficient remaining disk space (489267658752 B)
[2026-03-30 13:06:28] 2026-03-30 11:05:47,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 13:06:28] 2026-03-30 11:05:47,328 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 13:06:28] 2026-03-30 11:05:47,328 | INFO     | update_server=False
[2026-03-30 13:06:28] 2026-03-30 11:05:47,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 13:06:28] 2026-03-30 11:05:47,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 13:06:28] 2026-03-30 11:05:47,329 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-30 13:06:28] 2026-03-30 11:05:47,329 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 13:06:28] 2026-03-30 11:05:47,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 13:06:28] 2026-03-30 11:05:47,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 13:06:28] 2026-03-30 11:05:47,672 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 13:06:28] 2026-03-30 11:05:47,696 | INFO     | all data control threads have been joined
[2026-03-30 13:06:28] 2026-03-30 11:05:48,334 | INFO     | [job] retrieve thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:48,335 | INFO     | [job] queue monitor thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:48,495 | INFO     | all payload control threads have been joined
[2026-03-30 13:06:28] 2026-03-30 11:05:48,702 | INFO     | [data] control thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:48,861 | INFO     | all job control threads have been joined
[2026-03-30 13:06:28] 2026-03-30 11:05:49,182 | INFO     | [payload] failed_post thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,433 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,500 | INFO     | [payload] control thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,678 | INFO     | [data] copytool_out thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,684 | INFO     | [job] validate thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,685 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,689 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,786 | INFO     | [payload] validate_post thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,801 | INFO     | [data] copytool_in thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,867 | INFO     | [job] control thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:49,889 | INFO     | job.realtimelogging is not enabled
[2026-03-30 13:06:28] 2026-03-30 11:05:50,380 | INFO     | [monitor] cgroup control has ended
[2026-03-30 13:06:28] 2026-03-30 11:05:50,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 13:06:28] 2026-03-30 11:05:50,822 | WARNING  | process 2794392 can no longer be monitored (due to stat problems) - aborting
[2026-03-30 13:06:28] 2026-03-30 11:05:50,843 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 13:06:28] 2026-03-30 11:05:50,868 | INFO     | number of running child processes to parent process 2794392: 1
[2026-03-30 13:06:28] 2026-03-30 11:05:50,868 | INFO     | maximum number of monitored processes: 6
[2026-03-30 13:06:28] 2026-03-30 11:05:50,868 | INFO     | aborting job monitoring since job object (job id=7069741457) has expired
[2026-03-30 13:06:28] 2026-03-30 11:05:50,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 13:06:28] 2026-03-30 11:05:50,868 | INFO     | will abort loop
[2026-03-30 13:06:28] 2026-03-30 11:05:50,895 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:51,874 | INFO     | [job] job monitor thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:54,705 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 13:06:28] 2026-03-30 11:05:55,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154001512256)>', '<ExcThread(monitor, started 140153372800768)>']
[2026-03-30 13:06:28] 2026-03-30 11:05:56,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 13:06:28] 2026-03-30 11:05:56,373 | INFO     | [monitor] control thread has ended
[2026-03-30 13:06:28] 2026-03-30 11:06:00,617 | INFO     | all workflow threads have been joined
[2026-03-30 13:06:28] 2026-03-30 11:06:00,617 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 13:06:28] 2026-03-30 11:06:00,617 | INFO     | traces error code: 0
[2026-03-30 13:06:28] 2026-03-30 11:06:00,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 13:06:28] 2026-03-30 11:06:00,795 [wrapper] ==== pilot stdout END ====
[2026-03-30 13:06:28] 2026-03-30 11:06:00,799 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 13:06:28] 2026-03-30 11:06:00,802 [wrapper] pilotpid: 2789982
[2026-03-30 13:06:28] 2026-03-30 11:06:00,805 [wrapper] Pilot exit status: 0
[2026-03-30 13:06:28] 2026-03-30 11:06:00,814 [wrapper] pandaids: 7069741457
[2026-03-30 13:06:28] 2026-03-30 11:06:00,831 [wrapper] cleanup supervisor_pilot 2799769 2789983
[2026-03-30 13:06:28] 2026-03-30 11:06:00,834 [wrapper] Test setup, not cleaning
[2026-03-30 13:06:28] 2026-03-30 11:06:00,837 [wrapper] apfmon messages muted
[2026-03-30 13:06:28] 2026-03-30 11:06:00,839 [wrapper] ==== wrapper stdout END ====
[2026-03-30 13:06:28] 2026-03-30 11:06:00,842 [wrapper] ==== wrapper stderr END ====
[2026-03-30 13:06:28]  *** Error codes and diagnostics ***
[2026-03-30 13:06:28]     "exeErrorCode": 0,
[2026-03-30 13:06:28]     "exeErrorDiag": "",
[2026-03-30 13:06:28]     "pilotErrorCode": 0,
[2026-03-30 13:06:28]     "pilotErrorDiag": "",
[2026-03-30 13:06:28]  *** Listing of results directory ***
[2026-03-30 13:06:28] total 408988
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc    585013 Mar 29 19:08 pilot3.tar.gz
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc      5118 Mar 29 19:10 queuedata.json
[2026-03-30 13:06:28] -rwx------ 1 boinc boinc     36322 Mar 29 19:10 runpilot2-wrapper.sh
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc       100 Mar 30 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 13:06:28] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 11:03 run_atlas
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc       105 Mar 30 11:03 job.xml
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc 221802416 Mar 30 11:03 EVNT.49263206._000213.pool.root.1
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc    597537 Mar 30 11:03 input.tar.gz
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc     15845 Mar 30 11:03 start_atlas.sh
[2026-03-30 13:06:28] drwxrwx--x 2 boinc boinc      4096 Mar 30 11:03 shared
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc         0 Mar 30 11:03 boinc_setup_complete
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc      6206 Mar 30 11:03 init_data.xml
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc         0 Mar 30 11:03 boinc_lockfile
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc      2573 Mar 30 11:03 pandaJob.out
[2026-03-30 13:06:28] -rw------- 1 boinc boinc   1004121 Mar 30 11:03 agis_schedconf.cvmfs.json
[2026-03-30 13:06:28] -rw------- 1 boinc boinc   1511579 Mar 30 11:03 agis_ddmendpoints.agis.ALL.json
[2026-03-30 13:06:28] -rw------- 1 boinc boinc       420 Mar 30 11:03 workernode_map.json
[2026-03-30 13:06:28] drwx------ 5 boinc boinc      4096 Mar 30 11:03 pilot3
[2026-03-30 13:06:28] -rw------- 1 boinc boinc        95 Mar 30 13:05 pilot_heartbeat.json
[2026-03-30 13:06:28] -rw------- 1 boinc boinc 190418983 Mar 30 13:05 HITS.49263208._004092.pool.root.1
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc       529 Mar 30 13:05 boinc_task_state.xml
[2026-03-30 13:06:28] -rw------- 1 boinc boinc      1014 Mar 30 13:05 memory_monitor_summary.json
[2026-03-30 13:06:28] -rw------- 1 boinc boinc    277809 Mar 30 13:05 log.49263208._004092.job.log.tgz.1
[2026-03-30 13:06:28] -rw------- 1 boinc boinc      6292 Mar 30 13:05 heartbeat.json
[2026-03-30 13:06:28] -rw------- 1 boinc boinc      5148 Mar 30 13:06 pilotlog.txt
[2026-03-30 13:06:28] -rw------- 1 boinc boinc   1056641 Mar 30 13:06 log.49263208._004092.job.log.1
[2026-03-30 13:06:28] -rw------- 1 boinc boinc       357 Mar 30 13:06 output.list
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc       620 Mar 30 13:06 runtime_log
[2026-03-30 13:06:28] -rw------- 1 boinc boinc   1351680 Mar 30 13:06 result.tar.gz
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc      8901 Mar 30 13:06 runtime_log.err
[2026-03-30 13:06:28] -rw------- 1 boinc boinc       658 Mar 30 13:06 T8FNDmwp8Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDmBNNKDmYHfPrn.diag
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc      8192 Mar 30 13:06 boinc_mmap_file
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc        27 Mar 30 13:06 wrapper_checkpoint.txt
[2026-03-30 13:06:28] -rw-r--r-- 1 boinc boinc     10730 Mar 30 13:06 stderr.txt
[2026-03-30 13:06:28] HITS file was successfully produced:
[2026-03-30 13:06:28] -rw------- 1 boinc boinc 190418983 Mar 30 13:05 shared/HITS.pool.root.1
[2026-03-30 13:06:28]  *** Contents of shared directory: ***
[2026-03-30 13:06:28] total 404484
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc 221802416 Mar 30 11:03 ATLAS.root_0
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc    597537 Mar 30 11:03 input.tar.gz
[2026-03-30 13:06:28] -rw-r--r-- 2 boinc boinc     15845 Mar 30 11:03 start_atlas.sh
[2026-03-30 13:06:28] -rw------- 1 boinc boinc 190418983 Mar 30 13:05 HITS.pool.root.1
[2026-03-30 13:06:28] -rw------- 1 boinc boinc   1351680 Mar 30 13:06 result.tar.gz
13:06:30 (2785957): run_atlas exited; CPU time 14070.461696
13:06:30 (2785957): called boinc_finish(0)

</stderr_txt>
]]>

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