Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:34:04 (255822): wrapper (7.7.26015): starting
09:34:04 (255822): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 09:34:04] Arguments: --nthreads 4
[2026-03-30 09:34:04] Threads: 4
[2026-03-30 09:34:04] Checking for CVMFS
[2026-03-30 09:34:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 09:34:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 09:34:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 09:34:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 09:34:04] 2.9.2.0 3034 1043 86880 157872 3 188 18497749 36864001 0 130560 0 994958 99.993 39549 17695 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 09:34:04] CVMFS is ok
[2026-03-30 09:34:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 09:34:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 09:34:04] Further information can be found at the LHC@home message board.
[2026-03-30 09:34:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 09:34:04] Checking for apptainer binary...
[2026-03-30 09:34:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 09:34:04] Running /usr/bin/apptainer --version
[2026-03-30 09:34:04] apptainer version 1.4.1-1.1
[2026-03-30 09:34:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 09:34:04] thA373a
[2026-03-30 09:34:04] apptainer works
[2026-03-30 09:34:04] Set ATHENA_PROC_NUMBER=4
[2026-03-30 09:34:04] Set ATHENA_CORE_NUMBER=4
[2026-03-30 09:34:04] Starting ATLAS job with PandaID=7071899052
[2026-03-30 09:34:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 09:43:21]  *** The last 200 lines of the pilot log: ***
[2026-03-30 09:43:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 09:43:21] HOME_URL="https://www.centos.org/"
[2026-03-30 09:43:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 09:43:21] 
[2026-03-30 09:43:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 09:43:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 09:43:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 09:43:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 09:43:21] 
[2026-03-30 09:43:21] 2026-03-30 07:42:36,712 | INFO     | **************************************
[2026-03-30 09:43:21] 2026-03-30 07:42:37,215 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 09:43:21] 2026-03-30 07:42:37,232 | INFO     | sufficient remaining disk space (342872817664 B)
[2026-03-30 09:43:21] 2026-03-30 07:42:37,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 09:43:21] 2026-03-30 07:42:37,233 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 09:43:21] 2026-03-30 07:42:37,233 | INFO     | update_server=False
[2026-03-30 09:43:21] 2026-03-30 07:42:37,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 09:43:21] 2026-03-30 07:42:37,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 09:43:21] 2026-03-30 07:42:37,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-30 09:43:21] 2026-03-30 07:42:37,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-30 09:43:21] 2026-03-30 07:42:37,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 09:43:21] 2026-03-30 07:42:37,423 | INFO     | will abort loop
[2026-03-30 09:43:21] 2026-03-30 07:42:37,676 | INFO     | all job control threads have been joined
[2026-03-30 09:43:21] 2026-03-30 07:42:38,215 | INFO     | all data control threads have been joined
[2026-03-30 09:43:21] 2026-03-30 07:42:38,239 | INFO     | [job] retrieve thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,239 | INFO     | [job] queue monitor thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,428 | INFO     | [job] job monitor thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 09:43:21] 2026-03-30 07:42:38,682 | INFO     | [job] control thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,687 | INFO     | [job] validate thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,713 | INFO     | all payload control threads have been joined
[2026-03-30 09:43:21] 2026-03-30 07:42:38,774 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,861 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,974 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:38,997 | INFO     | [data] copytool_in thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:39,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 09:43:21] 2026-03-30 07:42:39,049 | INFO     | [payload] failed_post thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:39,220 | INFO     | [data] control thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:39,314 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:39,592 | INFO     | [payload] validate_post thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:39,718 | INFO     | [payload] control thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:40,615 | INFO     | [data] copytool_out thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:42:43,017 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 09:43:21] 2026-03-30 07:43:07,777 | INFO     | PID=259618 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-30 09:43:21] 2026-03-30 07:43:07,777 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 09:43:21] 2026-03-30 07:43:07,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 09:43:21] 2026-03-30 07:43:07,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 09:43:21] 2026-03-30 07:43:15,573 | INFO     | [monitor] cgroup control has ended
[2026-03-30 09:43:21] 2026-03-30 07:43:16,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394232235840)>', '<ExcThread(monitor, started 140393739966208)>']
[2026-03-30 09:43:21] 2026-03-30 07:43:16,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 09:43:21] 2026-03-30 07:43:16,823 | INFO     | [monitor] control thread has ended
[2026-03-30 09:43:21] 2026-03-30 07:43:21,537 | INFO     | all workflow threads have been joined
[2026-03-30 09:43:21] 2026-03-30 07:43:21,537 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 09:43:21] 2026-03-30 07:43:21,537 | INFO     | traces error code: 0
[2026-03-30 09:43:21] 2026-03-30 07:43:21,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 09:43:21] 2026-03-30 07:43:21,614 [wrapper] ==== pilot stdout END ====
[2026-03-30 09:43:21] 2026-03-30 07:43:21,618 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 09:43:21] 2026-03-30 07:43:21,621 [wrapper] pilotpid: 259618
[2026-03-30 09:43:21] 2026-03-30 07:43:21,625 [wrapper] Pilot exit status: 0
[2026-03-30 09:43:21] 2026-03-30 07:43:21,637 [wrapper] pandaids: 7071899052
[2026-03-30 09:43:21] 2026-03-30 07:43:21,657 [wrapper] cleanup supervisor_pilot  259624 259619
[2026-03-30 09:43:21] 2026-03-30 07:43:21,660 [wrapper] Test setup, not cleaning
[2026-03-30 09:43:21] 2026-03-30 07:43:21,665 [wrapper] apfmon messages muted
[2026-03-30 09:43:21] 2026-03-30 07:43:21,669 [wrapper] ==== wrapper stdout END ====
[2026-03-30 09:43:21] 2026-03-30 07:43:21,673 [wrapper] ==== wrapper stderr END ====
[2026-03-30 09:43:21]  *** Error codes and diagnostics ***
[2026-03-30 09:43:21]     "exeErrorCode": 65,
[2026-03-30 09:43:21]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-30 09:43:21]     "pilotErrorCode": 1305,
[2026-03-30 09:43:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-30 09:43:21]  *** Listing of results directory ***
[2026-03-30 09:43:21] total 222412
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc    585013 Mar 29 23:08 pilot3.tar.gz
[2026-03-30 09:43:21] -rwx------ 1 boinc boinc     36322 Mar 29 23:12 runpilot2-wrapper.sh
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      5118 Mar 29 23:13 queuedata.json
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc       100 Mar 30 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 09:43:21] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 09:34 run_atlas
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc       105 Mar 30 09:34 job.xml
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc 223300952 Mar 30 09:34 EVNT.49263206._000248.pool.root.1
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc    597543 Mar 30 09:34 input.tar.gz
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc     15845 Mar 30 09:34 start_atlas.sh
[2026-03-30 09:43:21] drwxrwx--x 2 boinc boinc      4096 Mar 30 09:34 shared
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc         0 Mar 30 09:34 boinc_setup_complete
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      6377 Mar 30 09:34 init_data.xml
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc         0 Mar 30 09:34 boinc_lockfile
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      2573 Mar 30 09:34 pandaJob.out
[2026-03-30 09:43:21] -rw------- 1 boinc boinc   1004063 Mar 30 09:34 agis_schedconf.cvmfs.json
[2026-03-30 09:43:21] -rw------- 1 boinc boinc   1511579 Mar 30 09:34 agis_ddmendpoints.agis.ALL.json
[2026-03-30 09:43:21] -rw------- 1 boinc boinc       422 Mar 30 09:34 workernode_map.json
[2026-03-30 09:43:21] drwx------ 5 boinc boinc      4096 Mar 30 09:34 pilot3
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc       526 Mar 30 09:40 boinc_task_state.xml
[2026-03-30 09:43:21] -rw------- 1 boinc boinc      1000 Mar 30 09:40 memory_monitor_summary.json
[2026-03-30 09:43:21] -rw------- 1 boinc boinc    137609 Mar 30 09:40 log.49263208._004971.job.log.tgz.1
[2026-03-30 09:43:21] -rw------- 1 boinc boinc        95 Mar 30 09:42 pilot_heartbeat.json
[2026-03-30 09:43:21] -rw------- 1 boinc boinc      7982 Mar 30 09:42 heartbeat.json
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      8192 Mar 30 09:42 boinc_mmap_file
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc        24 Mar 30 09:42 wrapper_checkpoint.txt
[2026-03-30 09:43:21] -rw------- 1 boinc boinc      4933 Mar 30 09:43 pilotlog.txt
[2026-03-30 09:43:21] -rw------- 1 boinc boinc    124995 Mar 30 09:43 log.49263208._004971.job.log.1
[2026-03-30 09:43:21] -rw------- 1 boinc boinc       188 Mar 30 09:43 output.list
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc       620 Mar 30 09:43 runtime_log
[2026-03-30 09:43:21] -rw------- 1 boinc boinc    286720 Mar 30 09:43 result.tar.gz
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      8748 Mar 30 09:43 runtime_log.err
[2026-03-30 09:43:21] -rw------- 1 boinc boinc       651 Mar 30 09:43 ogcNDmYbCR9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmomLKDmjBNvtm.diag
[2026-03-30 09:43:21] -rw-r--r-- 1 boinc boinc      9070 Mar 30 09:43 stderr.txt
[2026-03-30 09:43:21] No HITS result produced
[2026-03-30 09:43:21]  *** Contents of shared directory: ***
[2026-03-30 09:43:21] total 218952
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc 223300952 Mar 30 09:34 ATLAS.root_0
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc    597543 Mar 30 09:34 input.tar.gz
[2026-03-30 09:43:21] -rw-r--r-- 2 boinc boinc     15845 Mar 30 09:34 start_atlas.sh
[2026-03-30 09:43:21] -rw------- 1 boinc boinc    286720 Mar 30 09:43 result.tar.gz
09:43:23 (255822): run_atlas exited; CPU time 140.697279
09:43:23 (255822): called boinc_finish(0)

</stderr_txt>
]]>

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