Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:08:40 (1941455): wrapper (7.7.26015): starting
11:08:40 (1941455): wrapper: running run_atlas (--nthreads 3)
[2026-03-30 11:08:40] Arguments: --nthreads 3
[2026-03-30 11:08:40] Threads: 3
[2026-03-30 11:08:40] Checking for CVMFS
[2026-03-30 11:08:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 11:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 11:08:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 11:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 11:08:41] 2.9.2.0 1278530 5762 63432 157874 0 88 19659995 36864000 653 130560 0 2433060 99.984 224338 13934 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 11:08:41] CVMFS is ok
[2026-03-30 11:08:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 11:08:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 11:08:41] Further information can be found at the LHC@home message board.
[2026-03-30 11:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 11:08:41] Checking for apptainer binary...
[2026-03-30 11:08:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 11:08:41] Running /usr/bin/apptainer --version
[2026-03-30 11:08:41] apptainer version 1.4.1-1.1
[2026-03-30 11:08:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 11:08:41] thA389a
[2026-03-30 11:08:41] apptainer works
[2026-03-30 11:08:41] Set ATHENA_PROC_NUMBER=3
[2026-03-30 11:08:41] Set ATHENA_CORE_NUMBER=3
[2026-03-30 11:08:41] Starting ATLAS job with PandaID=7071899568
[2026-03-30 11:08:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 12:44:08]  *** The last 200 lines of the pilot log: ***
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | job 7071899568 has completed (purged errors)
[2026-03-30 12:44:08] 2026-03-30 10:43:36,323 | INFO     | overall cleanup function is called
[2026-03-30 12:44:08] 2026-03-30 10:43:37,329 | INFO     | --- collectZombieJob: --- 10, [1949925]
[2026-03-30 12:44:08] 2026-03-30 10:43:37,329 | INFO     | zombie collector waiting for pid 1949925
[2026-03-30 12:44:08] 2026-03-30 10:43:37,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 12:44:08] 2026-03-30 10:43:37,329 | INFO     | collected zombie processes
[2026-03-30 12:44:08] 2026-03-30 10:43:37,329 | INFO     | will attempt to kill all subprocesses of pid=1949925
[2026-03-30 12:44:08] 2026-03-30 10:43:37,371 | INFO     | process IDs to be killed: [1949925] (in reverse order)
[2026-03-30 12:44:08] 2026-03-30 10:43:37,396 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 12:44:08] 2026-03-30 10:43:37,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 12:44:08] 2026-03-30 10:43:37,398 | INFO     | did not find any defunct processes belonging to 1949925
[2026-03-30 12:44:08] 2026-03-30 10:43:37,399 | INFO     | did not find any defunct processes belonging to 1949925
[2026-03-30 12:44:08] 2026-03-30 10:43:37,399 | INFO     | ready for new job
[2026-03-30 12:44:08] 2026-03-30 10:43:37,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | **************************************
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | **************************************
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | 
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | architecture information:
[2026-03-30 12:44:08] 2026-03-30 10:43:37,400 | INFO     | executing command: cat /etc/os-release
[2026-03-30 12:44:08] 2026-03-30 10:43:37,410 | INFO     | cat /etc/os-release:
[2026-03-30 12:44:08] NAME="CentOS Linux"
[2026-03-30 12:44:08] VERSION="7 (Core)"
[2026-03-30 12:44:08] ID="centos"
[2026-03-30 12:44:08] ID_LIKE="rhel fedora"
[2026-03-30 12:44:08] VERSION_ID="7"
[2026-03-30 12:44:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 12:44:08] ANSI_COLOR="0;31"
[2026-03-30 12:44:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 12:44:08] HOME_URL="https://www.centos.org/"
[2026-03-30 12:44:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 12:44:08] 
[2026-03-30 12:44:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 12:44:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 12:44:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 12:44:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 12:44:08] 
[2026-03-30 12:44:08] 2026-03-30 10:43:37,410 | INFO     | **************************************
[2026-03-30 12:44:08] 2026-03-30 10:43:37,913 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 12:44:08] 2026-03-30 10:43:37,923 | INFO     | sufficient remaining disk space (70920437760 B)
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | INFO     | update_server=False
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 12:44:08] 2026-03-30 10:43:37,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 12:44:08] 2026-03-30 10:43:38,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 12:44:08] 2026-03-30 10:43:38,070 | INFO     | aborting loop
[2026-03-30 12:44:08] 2026-03-30 10:43:38,283 | INFO     | all job control threads have been joined
[2026-03-30 12:44:08] 2026-03-30 10:43:38,456 | INFO     | all payload control threads have been joined
[2026-03-30 12:44:08] 2026-03-30 10:43:38,598 | INFO     | all data control threads have been joined
[2026-03-30 12:44:08] 2026-03-30 10:43:38,928 | INFO     | [job] queue monitor thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:38,929 | INFO     | [job] retrieve thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,075 | INFO     | [job] job monitor thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,284 | INFO     | [job] control thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,461 | INFO     | [payload] control thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,603 | INFO     | [data] control thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,638 | INFO     | [payload] failed_post thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,673 | INFO     | [job] validate thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,807 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,815 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,899 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:39,929 | INFO     | [data] copytool_out thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:40,121 | INFO     | [data] copytool_in thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:40,332 | INFO     | [payload] validate_post thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:40,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 12:44:08] 2026-03-30 10:43:44,911 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:43:48,207 | INFO     | job.realtimelogging is not enabled
[2026-03-30 12:44:08] 2026-03-30 10:43:49,212 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 12:44:08] 2026-03-30 10:44:01,398 | INFO     | [monitor] cgroup control has ended
[2026-03-30 12:44:08] 2026-03-30 10:44:02,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149323011904)>', '<ExcThread(monitor, started 140148440282880)>']
[2026-03-30 12:44:08] 2026-03-30 10:44:07,709 | INFO     | all workflow threads have been joined
[2026-03-30 12:44:08] 2026-03-30 10:44:07,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 12:44:08] 2026-03-30 10:44:07,709 | INFO     | traces error code: 0
[2026-03-30 12:44:08] 2026-03-30 10:44:07,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | INFO     | PID=1945494 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 12:44:08] 2026-03-30 10:44:08,567 | INFO     | [monitor] control thread has ended
[2026-03-30 12:44:08] 2026-03-30 10:44:08,627 [wrapper] ==== pilot stdout END ====
[2026-03-30 12:44:08] 2026-03-30 10:44:08,629 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 12:44:08] 2026-03-30 10:44:08,632 [wrapper] pilotpid: 1945494
[2026-03-30 12:44:08] 2026-03-30 10:44:08,635 [wrapper] Pilot exit status: 0
[2026-03-30 12:44:08] 2026-03-30 10:44:08,643 [wrapper] pandaids: 7071899568
[2026-03-30 12:44:08] 2026-03-30 10:44:08,660 [wrapper] cleanup supervisor_pilot 1956896 1945495
[2026-03-30 12:44:08] 2026-03-30 10:44:08,662 [wrapper] Test setup, not cleaning
[2026-03-30 12:44:08] 2026-03-30 10:44:08,665 [wrapper] apfmon messages muted
[2026-03-30 12:44:08] 2026-03-30 10:44:08,668 [wrapper] ==== wrapper stdout END ====
[2026-03-30 12:44:08] 2026-03-30 10:44:08,671 [wrapper] ==== wrapper stderr END ====
[2026-03-30 12:44:08]  *** Error codes and diagnostics ***
[2026-03-30 12:44:08]     "exeErrorCode": 0,
[2026-03-30 12:44:08]     "exeErrorDiag": "",
[2026-03-30 12:44:08]     "pilotErrorCode": 0,
[2026-03-30 12:44:08]     "pilotErrorDiag": "",
[2026-03-30 12:44:08]  *** Listing of results directory ***
[2026-03-30 12:44:08] total 410376
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc    585013 Mar 29 23:08 pilot3.tar.gz
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc      5118 Mar 29 23:08 queuedata.json
[2026-03-30 12:44:08] -rwx------ 1 boinc boinc     36322 Mar 29 23:09 runpilot2-wrapper.sh
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc       100 Mar 30 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 12:44:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 11:08 run_atlas
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc       105 Mar 30 11:08 job.xml
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc 222874264 Mar 30 11:08 EVNT.49263206._000257.pool.root.1
[2026-03-30 12:44:08] drwxrwx--x 2 boinc boinc      4096 Mar 30 11:08 shared
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc    597539 Mar 30 11:08 input.tar.gz
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc     15845 Mar 30 11:08 start_atlas.sh
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc         0 Mar 30 11:08 boinc_setup_complete
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc      6196 Mar 30 11:08 init_data.xml
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc         0 Mar 30 11:08 boinc_lockfile
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc      2573 Mar 30 11:08 pandaJob.out
[2026-03-30 12:44:08] -rw------- 1 boinc boinc   1004121 Mar 30 11:08 agis_schedconf.cvmfs.json
[2026-03-30 12:44:08] -rw------- 1 boinc boinc   1511579 Mar 30 11:08 agis_ddmendpoints.agis.ALL.json
[2026-03-30 12:44:08] -rw------- 1 boinc boinc       427 Mar 30 11:08 workernode_map.json
[2026-03-30 12:44:08] drwx------ 5 boinc boinc      4096 Mar 30 11:08 pilot3
[2026-03-30 12:44:08] -rw------- 1 boinc boinc 191238062 Mar 30 12:43 HITS.49263208._005194.pool.root.1
[2026-03-30 12:44:08] -rw------- 1 boinc boinc        95 Mar 30 12:43 pilot_heartbeat.json
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc       529 Mar 30 12:43 boinc_task_state.xml
[2026-03-30 12:44:08] -rw------- 1 boinc boinc      1018 Mar 30 12:43 memory_monitor_summary.json
[2026-03-30 12:44:08] -rw------- 1 boinc boinc    271520 Mar 30 12:43 log.49263208._005194.job.log.tgz.1
[2026-03-30 12:44:08] -rw------- 1 boinc boinc      6303 Mar 30 12:43 heartbeat.json
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc      8192 Mar 30 12:43 boinc_mmap_file
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc        27 Mar 30 12:43 wrapper_checkpoint.txt
[2026-03-30 12:44:08] -rw------- 1 boinc boinc       747 Mar 30 12:44 pilotlog.txt
[2026-03-30 12:44:08] -rw------- 1 boinc boinc    826405 Mar 30 12:44 log.49263208._005194.job.log.1
[2026-03-30 12:44:08] -rw------- 1 boinc boinc       357 Mar 30 12:44 output.list
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc       620 Mar 30 12:44 runtime_log
[2026-03-30 12:44:08] -rw------- 1 boinc boinc   1116160 Mar 30 12:44 result.tar.gz
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc      8901 Mar 30 12:44 runtime_log.err
[2026-03-30 12:44:08] -rw------- 1 boinc boinc       658 Mar 30 12:44 X1dNDmsYCR9n9Rq4apOajLDm4fhM0noT9bVoINGKDm7qNKDmKbaHYo.diag
[2026-03-30 12:44:08] -rw-r--r-- 1 boinc boinc     11922 Mar 30 12:44 stderr.txt
[2026-03-30 12:44:08] HITS file was successfully produced:
[2026-03-30 12:44:08] -rw------- 1 boinc boinc 191238062 Mar 30 12:43 shared/HITS.pool.root.1
[2026-03-30 12:44:08]  *** Contents of shared directory: ***
[2026-03-30 12:44:08] total 406104
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc 222874264 Mar 30 11:08 ATLAS.root_0
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc    597539 Mar 30 11:08 input.tar.gz
[2026-03-30 12:44:08] -rw-r--r-- 2 boinc boinc     15845 Mar 30 11:08 start_atlas.sh
[2026-03-30 12:44:08] -rw------- 1 boinc boinc 191238062 Mar 30 12:43 HITS.pool.root.1
[2026-03-30 12:44:08] -rw------- 1 boinc boinc   1116160 Mar 30 12:44 result.tar.gz
12:44:09 (1941455): run_atlas exited; CPU time 16110.518279
12:44:09 (1941455): called boinc_finish(0)

</stderr_txt>
]]>

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