Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:25:47 (300383): wrapper (7.7.26015): starting
10:25:47 (300383): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 10:25:47] Arguments: --nthreads 4
[2026-03-30 10:25:47] Threads: 4
[2026-03-30 10:25:47] Checking for CVMFS
[2026-03-30 10:25:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 10:25:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 10:26:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 10:26:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 10:26:09] 2.9.2.0 3066 2502 88364 157873 2 50 32682968 36864000 0 130560 0 1106943 99.985 94141 16816 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 10:26:09] CVMFS is ok
[2026-03-30 10:26:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 10:26:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 10:26:09] Further information can be found at the LHC@home message board.
[2026-03-30 10:26:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 10:26:09] Checking for apptainer binary...
[2026-03-30 10:26:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 10:26:09] Running /usr/bin/apptainer --version
[2026-03-30 10:26:09] apptainer version 1.4.1-1.1
[2026-03-30 10:26:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 10:26:09] thA334
[2026-03-30 10:26:09] apptainer works
[2026-03-30 10:26:09] Set ATHENA_PROC_NUMBER=4
[2026-03-30 10:26:09] Set ATHENA_CORE_NUMBER=4
[2026-03-30 10:26:09] Starting ATLAS job with PandaID=7061854844
[2026-03-30 10:26:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 13:06:41]  *** The last 200 lines of the pilot log: ***
[2026-03-30 13:06:41] 2026-03-30 11:05:50,608 | INFO     | job 7061854844 has completed (purged errors)
[2026-03-30 13:06:41] 2026-03-30 11:05:50,608 | INFO     | overall cleanup function is called
[2026-03-30 13:06:41] 2026-03-30 11:05:51,614 | INFO     | --- collectZombieJob: --- 10, [309029]
[2026-03-30 13:06:41] 2026-03-30 11:05:51,615 | INFO     | zombie collector waiting for pid 309029
[2026-03-30 13:06:41] 2026-03-30 11:05:51,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 13:06:41] 2026-03-30 11:05:51,615 | INFO     | collected zombie processes
[2026-03-30 13:06:41] 2026-03-30 11:05:51,615 | INFO     | will attempt to kill all subprocesses of pid=309029
[2026-03-30 13:06:41] 2026-03-30 11:05:51,657 | INFO     | process IDs to be killed: [309029] (in reverse order)
[2026-03-30 13:06:41] 2026-03-30 11:05:51,689 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 13:06:41] 2026-03-30 11:05:51,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 13:06:41] 2026-03-30 11:05:51,691 | INFO     | did not find any defunct processes belonging to 309029
[2026-03-30 13:06:41] 2026-03-30 11:05:51,692 | INFO     | did not find any defunct processes belonging to 309029
[2026-03-30 13:06:41] 2026-03-30 11:05:51,692 | INFO     | ready for new job
[2026-03-30 13:06:41] 2026-03-30 11:05:51,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | **************************************
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | **************************************
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | 
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | architecture information:
[2026-03-30 13:06:41] 2026-03-30 11:05:51,693 | INFO     | executing command: cat /etc/os-release
[2026-03-30 13:06:41] 2026-03-30 11:05:51,706 | INFO     | cat /etc/os-release:
[2026-03-30 13:06:41] NAME="CentOS Linux"
[2026-03-30 13:06:41] VERSION="7 (Core)"
[2026-03-30 13:06:41] ID="centos"
[2026-03-30 13:06:41] ID_LIKE="rhel fedora"
[2026-03-30 13:06:41] VERSION_ID="7"
[2026-03-30 13:06:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 13:06:41] ANSI_COLOR="0;31"
[2026-03-30 13:06:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 13:06:41] HOME_URL="https://www.centos.org/"
[2026-03-30 13:06:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 13:06:41] 
[2026-03-30 13:06:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 13:06:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 13:06:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 13:06:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 13:06:41] 
[2026-03-30 13:06:41] 2026-03-30 11:05:51,707 | INFO     | **************************************
[2026-03-30 13:06:41] 2026-03-30 11:05:52,210 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | INFO     | sufficient remaining disk space (226412724224 B)
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | INFO     | update_server=False
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 13:06:41] 2026-03-30 11:05:52,226 | INFO     | aborting loop
[2026-03-30 13:06:41] 2026-03-30 11:05:52,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 13:06:41] 2026-03-30 11:05:52,982 | INFO     | all data control threads have been joined
[2026-03-30 13:06:41] 2026-03-30 11:05:53,091 | INFO     | all job control threads have been joined
[2026-03-30 13:06:41] 2026-03-30 11:05:53,232 | INFO     | [job] retrieve thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:53,232 | INFO     | [job] job monitor thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:53,233 | INFO     | [job] queue monitor thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:53,361 | INFO     | [data] copytool_in thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:53,421 | INFO     | all payload control threads have been joined
[2026-03-30 13:06:41] 2026-03-30 11:05:53,542 | INFO     | [payload] validate_post thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:53,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 13:06:41] 2026-03-30 11:05:53,988 | INFO     | [data] control thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,097 | INFO     | [job] control thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,427 | INFO     | [payload] control thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,474 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,498 | INFO     | [job] validate thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,616 | INFO     | [payload] failed_post thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,627 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:54,670 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:55,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 13:06:41] 2026-03-30 11:05:55,631 | INFO     | [data] copytool_out thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:05:59,343 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:06:02,411 | INFO     | job.realtimelogging is not enabled
[2026-03-30 13:06:41] 2026-03-30 11:06:03,417 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 13:06:41] 2026-03-30 11:06:21,910 | INFO     | PID=304512 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-30 13:06:41] 2026-03-30 11:06:21,911 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 13:06:41] 2026-03-30 11:06:21,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 13:06:41] 2026-03-30 11:06:21,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 13:06:41] 2026-03-30 11:06:34,632 | INFO     | [monitor] cgroup control has ended
[2026-03-30 13:06:41] 2026-03-30 11:06:36,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069006907200)>', '<ExcThread(monitor, started 140068001933056)>']
[2026-03-30 13:06:41] 2026-03-30 11:06:36,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 13:06:41] 2026-03-30 11:06:36,990 | INFO     | [monitor] control thread has ended
[2026-03-30 13:06:41] 2026-03-30 11:06:41,437 | INFO     | all workflow threads have been joined
[2026-03-30 13:06:41] 2026-03-30 11:06:41,437 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 13:06:41] 2026-03-30 11:06:41,438 | INFO     | traces error code: 0
[2026-03-30 13:06:41] 2026-03-30 11:06:41,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 13:06:41] 2026-03-30 11:06:41,506 [wrapper] ==== pilot stdout END ====
[2026-03-30 13:06:41] 2026-03-30 11:06:41,510 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 13:06:41] 2026-03-30 11:06:41,514 [wrapper] pilotpid: 304512
[2026-03-30 13:06:41] 2026-03-30 11:06:41,517 [wrapper] Pilot exit status: 0
[2026-03-30 13:06:41] 2026-03-30 11:06:41,528 [wrapper] pandaids: 7061854844
[2026-03-30 13:06:41] 2026-03-30 11:06:41,550 [wrapper] cleanup supervisor_pilot  315957 304513
[2026-03-30 13:06:41] 2026-03-30 11:06:41,553 [wrapper] Test setup, not cleaning
[2026-03-30 13:06:41] 2026-03-30 11:06:41,557 [wrapper] apfmon messages muted
[2026-03-30 13:06:41] 2026-03-30 11:06:41,561 [wrapper] ==== wrapper stdout END ====
[2026-03-30 13:06:41] 2026-03-30 11:06:41,564 [wrapper] ==== wrapper stderr END ====
[2026-03-30 13:06:41]  *** Error codes and diagnostics ***
[2026-03-30 13:06:41]     "exeErrorCode": 0,
[2026-03-30 13:06:41]     "exeErrorDiag": "",
[2026-03-30 13:06:41]     "pilotErrorCode": 0,
[2026-03-30 13:06:41]     "pilotErrorDiag": "",
[2026-03-30 13:06:41]  *** Listing of results directory ***
[2026-03-30 13:06:41] total 442220
[2026-03-30 13:06:41] -rwx------ 1 boinc boinc     36322 Mar 22 16:04 runpilot2-wrapper.sh
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc      5111 Mar 22 18:25 queuedata.json
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc       100 Mar 30 10:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 13:06:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 10:25 run_atlas
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc       105 Mar 30 10:25 job.xml
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc 225695103 Mar 30 10:25 EVNT.49136099._000010.pool.root.1
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc    597559 Mar 30 10:25 input.tar.gz
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc     15845 Mar 30 10:25 start_atlas.sh
[2026-03-30 13:06:41] drwxrwx--x 2 boinc boinc      4096 Mar 30 10:25 shared
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc         0 Mar 30 10:25 boinc_setup_complete
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc      6369 Mar 30 10:25 init_data.xml
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc         0 Mar 30 10:25 boinc_lockfile
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc      2693 Mar 30 10:26 pandaJob.out
[2026-03-30 13:06:41] -rw------- 1 boinc boinc   1004121 Mar 30 10:26 agis_schedconf.cvmfs.json
[2026-03-30 13:06:41] -rw------- 1 boinc boinc   1511579 Mar 30 10:26 agis_ddmendpoints.agis.ALL.json
[2026-03-30 13:06:41] -rw------- 1 boinc boinc       419 Mar 30 10:26 workernode_map.json
[2026-03-30 13:06:41] drwx------ 5 boinc boinc      4096 Mar 30 10:26 pilot3
[2026-03-30 13:06:41] -rw------- 1 boinc boinc 219807696 Mar 30 13:05 HITS.49177010._000247.pool.root.1
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc       529 Mar 30 13:05 boinc_task_state.xml
[2026-03-30 13:06:41] -rw------- 1 boinc boinc      1019 Mar 30 13:05 memory_monitor_summary.json
[2026-03-30 13:06:41] -rw------- 1 boinc boinc    345092 Mar 30 13:05 log.49177010._000247.job.log.tgz.1
[2026-03-30 13:06:41] -rw------- 1 boinc boinc      6297 Mar 30 13:05 heartbeat.json
[2026-03-30 13:06:41] -rw------- 1 boinc boinc        95 Mar 30 13:06 pilot_heartbeat.json
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc        27 Mar 30 13:06 wrapper_checkpoint.txt
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc      8192 Mar 30 13:06 boinc_mmap_file
[2026-03-30 13:06:41] -rw------- 1 boinc boinc      4819 Mar 30 13:06 pilotlog.txt
[2026-03-30 13:06:41] -rw------- 1 boinc boinc   1359683 Mar 30 13:06 log.49177010._000247.job.log.1
[2026-03-30 13:06:41] -rw------- 1 boinc boinc       357 Mar 30 13:06 output.list
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc       620 Mar 30 13:06 runtime_log
[2026-03-30 13:06:41] -rw------- 1 boinc boinc   1720320 Mar 30 13:06 result.tar.gz
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc      8896 Mar 30 13:06 runtime_log.err
[2026-03-30 13:06:41] -rw------- 1 boinc boinc       658 Mar 30 13:06 hIfNDm4WZO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmn84LDmGXBmcn.diag
[2026-03-30 13:06:41] -rw-r--r-- 1 boinc boinc     10889 Mar 30 13:06 stderr.txt
[2026-03-30 13:06:41] HITS file was successfully produced:
[2026-03-30 13:06:41] -rw------- 1 boinc boinc 219807696 Mar 30 13:05 shared/HITS.pool.root.1
[2026-03-30 13:06:41]  *** Contents of shared directory: ***
[2026-03-30 13:06:41] total 437352
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc 225695103 Mar 30 10:25 ATLAS.root_0
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc    597559 Mar 30 10:25 input.tar.gz
[2026-03-30 13:06:41] -rw-r--r-- 2 boinc boinc     15845 Mar 30 10:25 start_atlas.sh
[2026-03-30 13:06:41] -rw------- 1 boinc boinc 219807696 Mar 30 13:05 HITS.pool.root.1
[2026-03-30 13:06:41] -rw------- 1 boinc boinc   1720320 Mar 30 13:06 result.tar.gz
13:07:03 (300383): run_atlas exited; CPU time 36623.405120
13:07:03 (300383): called boinc_finish(0)

</stderr_txt>
]]>

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