Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:56:05 (434180): wrapper (7.7.26015): starting
22:56:05 (434180): wrapper: running run_atlas (--nthreads 12)
[2026-03-30 22:56:05] Arguments: --nthreads 12
[2026-03-30 22:56:05] Threads: 12
[2026-03-30 22:56:05] Checking for CVMFS
[2026-03-30 22:56:05] No cvmfs_config command found, will try listing directly
[2026-03-30 22:56:05] CVMFS is ok
[2026-03-30 22:56:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 22:56:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 22:56:05] Further information can be found at the LHC@home message board.
[2026-03-30 22:56:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 22:56:05] Checking for apptainer binary...
[2026-03-30 22:56:05] which: no apptainer in ((null))
[2026-03-30 22:56:05] apptainer is not installed, using version from CVMFS
[2026-03-30 22:56:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 22:56:05] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot228/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-30 22:56:05] apptainer works
[2026-03-30 22:56:05] Set ATHENA_PROC_NUMBER=12
[2026-03-30 22:56:05] Set ATHENA_CORE_NUMBER=12
[2026-03-30 22:56:05] Starting ATLAS job with PandaID=7061854633
[2026-03-30 22:56:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot228/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-31 00:03:28]  *** The last 200 lines of the pilot log: ***
[2026-03-31 00:03:28]  lfn=log.49177010._000036.job.log.tgz.1
[2026-03-31 00:03:28]  mtime=0
[2026-03-31 00:03:28]  protocol_id=None
[2026-03-31 00:03:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-31 00:03:28]  replicas=None
[2026-03-31 00:03:28]  scope=mc23_13p6TeV
[2026-03-31 00:03:28]  status=None
[2026-03-31 00:03:28]  status_code=0
[2026-03-31 00:03:28]  storage_token=
[2026-03-31 00:03:28]  surl=/var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7061854633/log.49177010._000036.job.log.tgz.1
[2026-03-31 00:03:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/d8/log.49177010._000036.job.log.tgz.1
[2026-03-31 00:03:28]  workdir=None
[2026-03-31 00:03:28] ]
[2026-03-31 00:03:28] 2026-03-30 22:02:34,248 | INFO     | transferring file log.49177010._000036.job.log.tgz.1 from /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7061854633/log.49177010._000036.job.log.tgz.1 to /var/lib/
[2026-03-31 00:03:28] 2026-03-30 22:02:34,248 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7061854633/log.49177010._000036.job.log.tgz.1 /var/lib/boinc/var/slot228/slots/1/
[2026-03-31 00:03:28] 2026-03-30 22:02:34,264 | INFO     | adding to output.list: log.49177010._000036.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/d8/log.49177010._000036.job.log.tg
[2026-03-31 00:03:28] 2026-03-30 22:02:34,265 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-31 00:03:28] 2026-03-30 22:02:34,265 | INFO     | summary of transferred files:
[2026-03-31 00:03:28] 2026-03-30 22:02:34,265 | INFO     |  -- lfn=log.49177010._000036.job.log.tgz.1, status_code=0, status=transferred
[2026-03-31 00:03:28] 2026-03-30 22:02:34,265 | INFO     | stage-out finished correctly
[2026-03-31 00:03:28] 2026-03-30 22:02:34,762 | INFO     | time since job start (3978s) is within the limit (345600.0s)
[2026-03-31 00:03:28] 2026-03-30 22:02:36,235 | INFO     | PID=438719 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-31 00:03:28] 2026-03-30 22:02:36,235 | INFO     | .. there are 17 such processes running
[2026-03-31 00:03:28] 2026-03-30 22:02:36,517 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-31 00:03:28] 2026-03-30 22:02:37,236 | INFO     | time since job start (3981s) is within the limit (345600.0s)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,677 | INFO     | job 7061854633 has state=finished
[2026-03-31 00:03:28] 2026-03-30 22:02:37,678 | INFO     | preparing for final server update for job 7061854633 in state='finished'
[2026-03-31 00:03:28] 2026-03-30 22:02:37,678 | INFO     | reading metadata from: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7061854633/jobReport.json
[2026-03-31 00:03:28] 2026-03-30 22:02:37,679 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot228/slots/1/workernode_map.json
[2026-03-31 00:03:28] 2026-03-30 22:02:37,679 | INFO     | this job has now completed (state=finished)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,680 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,680 | INFO     | log transfer has been attempted: DONE
[2026-03-31 00:03:28] 2026-03-30 22:02:37,680 | INFO     | job 7061854633 has finished - writing final server update
[2026-03-31 00:03:28] 2026-03-30 22:02:37,680 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1563866/.job.ad'
[2026-03-31 00:03:28] 2026-03-30 22:02:37,680 | INFO     | total number of processed events: 400 (read)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,697 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/PanDA_Pilot-7061854633/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,698 | INFO     | extracted standard info from prmon json
[2026-03-31 00:03:28] 2026-03-30 22:02:37,698 | INFO     | extracted standard memory fields from prmon json
[2026-03-31 00:03:28] 2026-03-30 22:02:37,698 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-31 00:03:28] 2026-03-30 22:02:37,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-31 00:03:28] 2026-03-30 22:02:37,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | fitting pss+swap vs Time
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | sum of square deviations: 60482994.5
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | sum of deviations: 574873271.9999999
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | mean x: 1774906240.5
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | mean y: 2701625.0344827585
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | intersect: -16867265981.636408
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | chi2: 0.001030880953426092
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | current memory leak: 9.50 B/s (using 58 data points, chi2=0.00)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | could have reported an average CPU frequency of 3637 MHz (6 samples)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | ..............................
[2026-03-31 00:03:28] 2026-03-30 22:02:37,699 | INFO     | . Timing measurements:
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . get job = 0 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . initial setup = 4 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . payload setup = 6 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . stage-in = 0 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . payload execution = 3955 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . stage-out = 0 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | . log creation = 0 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,700 | INFO     | ..............................
[2026-03-31 00:03:28] 2026-03-30 22:02:37,746 | INFO     | 
[2026-03-31 00:03:28] 2026-03-30 22:02:37,746 | INFO     | job summary report
[2026-03-31 00:03:28] 2026-03-30 22:02:37,746 | INFO     | --------------------------------------------------
[2026-03-31 00:03:28] 2026-03-30 22:02:37,746 | INFO     | PanDA job id: 7061854633
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | task id: 49177010
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | errors: (none)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | pilot state: finished 
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | transexitcode: 0
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | exeerrorcode: 0
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | exeerrordiag: 
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | exitcode: 0
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | exitmsg: OK
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | cpuconsumptiontime: 42915 s
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | nevents: 400
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | neventsw: 0
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | pid: 444513
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | pgrp: 444513
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | corecount: 12
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | event service: False
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | sizes: {0: 2280392, 11: 2280392, 3965: 2306325, 3967: 2315347, 3969: 2315403, 3970: 2315597}
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | --------------------------------------------------
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | 
[2026-03-31 00:03:28] 2026-03-30 22:02:37,747 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot228/slots/1
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,765 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-31 00:03:28] 2026-03-30 22:02:37,765 | INFO     | job 7061854633 has completed (purged errors)
[2026-03-31 00:03:28] 2026-03-30 22:02:37,765 | INFO     | overall cleanup function is called
[2026-03-31 00:03:28] 2026-03-30 22:02:38,771 | INFO     | --- collectZombieJob: --- 10, [444513]
[2026-03-31 00:03:28] 2026-03-30 22:02:38,771 | INFO     | zombie collector waiting for pid 444513
[2026-03-31 00:03:28] 2026-03-30 22:02:38,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-31 00:03:28] 2026-03-30 22:02:38,772 | INFO     | collected zombie processes
[2026-03-31 00:03:28] 2026-03-30 22:02:38,772 | INFO     | will attempt to kill all subprocesses of pid=444513
[2026-03-31 00:03:28] 2026-03-30 22:02:40,002 | INFO     | process IDs to be killed: [444513] (in reverse order)
[2026-03-31 00:03:28] 2026-03-30 22:02:40,029 | WARNING  | process 444513 can no longer be monitored (due to stat problems) - aborting
[2026-03-31 00:03:28] 2026-03-30 22:02:40,164 | WARNING  | found no corresponding commands to process id(s)
[2026-03-31 00:03:28] 2026-03-30 22:02:40,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-31 00:03:28] 2026-03-30 22:02:40,237 | INFO     | did not find any defunct processes belonging to 444513
[2026-03-31 00:03:28] 2026-03-30 22:02:40,290 | INFO     | did not find any defunct processes belonging to 444513
[2026-03-31 00:03:28] 2026-03-30 22:02:40,290 | INFO     | ready for new job
[2026-03-31 00:03:28] 2026-03-30 22:02:40,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-31 00:03:28] 2026-03-30 22:02:40,292 | INFO     | **************************************
[2026-03-31 00:03:28] 2026-03-30 22:02:40,292 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-31 00:03:28] 2026-03-30 22:02:40,292 | INFO     | **************************************
[2026-03-31 00:03:28] 2026-03-30 22:02:40,292 | INFO     | 
[2026-03-31 00:03:28] 2026-03-30 22:02:40,300 | INFO     | architecture information:
[2026-03-31 00:03:28] 2026-03-30 22:02:40,300 | INFO     | executing command: cat /etc/os-release
[2026-03-31 00:03:28] 2026-03-30 22:02:40,311 | INFO     | using path: /var/lib/boinc/var/slot228/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-31 00:03:28] 2026-03-30 22:02:40,319 | INFO     | cat /etc/os-release:
[2026-03-31 00:03:28] NAME="CentOS Linux"
[2026-03-31 00:03:28] VERSION="7 (Core)"
[2026-03-31 00:03:28] ID="centos"
[2026-03-31 00:03:28] ID_LIKE="rhel fedora"
[2026-03-31 00:03:28] VERSION_ID="7"
[2026-03-31 00:03:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-31 00:03:28] ANSI_COLOR="0;31"
[2026-03-31 00:03:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-31 00:03:28] HOME_URL="https://www.centos.org/"
[2026-03-31 00:03:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-31 00:03:28] 
[2026-03-31 00:03:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-31 00:03:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-31 00:03:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-31 00:03:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-31 00:03:28] 
[2026-03-31 00:03:28] 2026-03-30 22:02:40,320 | INFO     | **************************************
[2026-03-31 00:03:28] 2026-03-30 22:02:40,662 | INFO     | number of running child processes to parent process 444513: 1
[2026-03-31 00:03:28] 2026-03-30 22:02:40,662 | INFO     | maximum number of monitored processes: 6
[2026-03-31 00:03:28] 2026-03-30 22:02:40,662 | INFO     | aborting job monitoring since job object (job id=7061854633) has expired
[2026-03-31 00:03:28] 2026-03-30 22:02:40,823 | INFO     | executing command: df -mP /var/lib/boinc/var/slot228/slots/1
[2026-03-31 00:03:28] 2026-03-30 22:02:40,842 | INFO     | sufficient remaining disk space (168368799744 B)
[2026-03-31 00:03:28] 2026-03-30 22:02:40,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-31 00:03:28] 2026-03-30 22:02:40,843 | INFO     | current server update state: UPDATING_FINAL
[2026-03-31 00:03:28] 2026-03-30 22:02:40,843 | INFO     | update_server=False
[2026-03-31 00:03:28] 2026-03-30 22:02:40,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-31 00:03:28] 2026-03-30 22:02:40,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-31 00:03:28] 2026-03-30 22:02:40,844 | INFO     | will abort loop
[2026-03-31 00:03:28] 2026-03-30 22:02:40,856 | INFO     | all data control threads have been joined
[2026-03-31 00:03:28] 2026-03-30 22:02:41,610 | INFO     | all payload control threads have been joined
[2026-03-31 00:03:28] 2026-03-30 22:02:41,848 | INFO     | [job] retrieve thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:41,849 | INFO     | [job] job monitor thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:41,861 | INFO     | [data] control thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:42,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-31 00:03:28] 2026-03-30 22:02:42,409 | INFO     | [payload] execute_payloads thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:42,422 | INFO     | all job control threads have been joined
[2026-03-31 00:03:28] 2026-03-30 22:02:42,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-31 00:03:28] 2026-03-30 22:02:42,616 | INFO     | [payload] control thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:42,641 | INFO     | [job] validate thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:42,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-31 00:03:28] 2026-03-30 22:02:42,900 | INFO     | [job] create_data_payload thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,097 | INFO     | [payload] validate_post thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,120 | INFO     | [payload] validate_pre thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,154 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,208 | INFO     | [data] copytool_in thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,233 | INFO     | [payload] failed_post thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,428 | INFO     | [job] control thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:43,761 | INFO     | [job] queue monitor thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:44,335 | INFO     | [data] copytool_out thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:02:46,575 | INFO     | [data] queue_monitor thread has finished
[2026-03-31 00:03:28] 2026-03-30 22:03:10,745 | INFO     | PID=438719 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-31 00:03:28] 2026-03-30 22:03:10,749 | INFO     | .. there are 16 such processes running
[2026-03-31 00:03:28] 2026-03-30 22:03:10,749 | INFO     | found 0 job(s) in 20 queues
[2026-03-31 00:03:28] 2026-03-30 22:03:10,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-31 00:03:28] 2026-03-30 22:03:10,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-31 00:03:28] 2026-03-30 22:03:22,158 | INFO     | [monitor] cgroup control has ended
[2026-03-31 00:03:28] 2026-03-30 22:03:23,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22562529662784)>', '<ExcThread(monitor, started 22562288707328)>']
[2026-03-31 00:03:28] 2026-03-30 22:03:23,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-31 00:03:28] 2026-03-30 22:03:23,808 | INFO     | [monitor] control thread has ended
[2026-03-31 00:03:28] 2026-03-30 22:03:28,075 | INFO     | all workflow threads have been joined
[2026-03-31 00:03:28] 2026-03-30 22:03:28,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-31 00:03:28] 2026-03-30 22:03:28,076 | INFO     | traces error code: 0
[2026-03-31 00:03:28] 2026-03-30 22:03:28,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-31 00:03:28] 2026-03-30 22:03:28,191 [wrapper] ==== pilot stdout END ====
[2026-03-31 00:03:28] 2026-03-30 22:03:28,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-31 00:03:28] 2026-03-30 22:03:28,196 [wrapper] pilotpid: 438719
[2026-03-31 00:03:28] 2026-03-30 22:03:28,198 [wrapper] Pilot exit status: 0
[2026-03-31 00:03:28] 2026-03-30 22:03:28,205 [wrapper] pandaids: 7061854633
[2026-03-31 00:03:28] 2026-03-30 22:03:28,307 [wrapper] cleanup supervisor_pilot  897241 438720
[2026-03-31 00:03:28] 2026-03-30 22:03:28,310 [wrapper] Test setup, not cleaning
[2026-03-31 00:03:28] 2026-03-30 22:03:28,312 [wrapper] apfmon messages muted
[2026-03-31 00:03:28] 2026-03-30 22:03:28,314 [wrapper] ==== wrapper stdout END ====
[2026-03-31 00:03:28] 2026-03-30 22:03:28,316 [wrapper] ==== wrapper stderr END ====
[2026-03-31 00:03:28]  *** Error codes and diagnostics ***
[2026-03-31 00:03:28]     "exeErrorCode": 0,
[2026-03-31 00:03:28]     "exeErrorDiag": "",
[2026-03-31 00:03:28]     "pilotErrorCode": 0,
[2026-03-31 00:03:28]     "pilotErrorDiag": "",
[2026-03-31 00:03:28]  *** Listing of results directory ***
[2026-03-31 00:03:28] total 441484
[2026-03-31 00:03:28] -rwx------. 1 boinc boinc     36322 Mar 22 16:04 runpilot2-wrapper.sh
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc      5111 Mar 22 18:23 queuedata.json
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc       100 Mar 30 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-31 00:03:28] -rwxr-xr-x. 1 boinc boinc      7986 Mar 30 22:56 run_atlas
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc       105 Mar 30 22:56 job.xml
[2026-03-31 00:03:28] drwxrwx--x. 2 boinc boinc      4096 Mar 30 22:56 shared
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc    597561 Mar 30 22:56 input.tar.gz
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc      6712 Mar 30 22:56 init_data.xml
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc 225665095 Mar 30 22:56 EVNT.49136099._000002.pool.root.1
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc     15845 Mar 30 22:56 start_atlas.sh
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc         0 Mar 30 22:56 boinc_lockfile
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc      2691 Mar 30 22:56 pandaJob.out
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc   1004000 Mar 30 22:56 agis_schedconf.cvmfs.json
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc   1511579 Mar 30 22:56 agis_ddmendpoints.agis.ALL.json
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc       444 Mar 30 22:56 workernode_map.json
[2026-03-31 00:03:28] drwx------. 5 boinc boinc      4096 Mar 30 22:56 pilot3
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc 220517891 Mar 31 00:02 HITS.49177010._000036.pool.root.1
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc       529 Mar 31 00:02 boinc_task_state.xml
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc      1029 Mar 31 00:02 memory_monitor_summary.json
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc    377192 Mar 31 00:02 log.49177010._000036.job.log.tgz.1
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc      6344 Mar 31 00:02 heartbeat.json
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc        95 Mar 31 00:03 pilot_heartbeat.json
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc      8192 Mar 31 00:03 boinc_mmap_file
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc        27 Mar 31 00:03 wrapper_checkpoint.txt
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc      5248 Mar 31 00:03 pilotlog.txt
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc    598708 Mar 31 00:03 log.49177010._000036.job.log.1
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc       357 Mar 31 00:03 output.list
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc       620 Mar 31 00:03 runtime_log
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc    993280 Mar 31 00:03 result.tar.gz
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc      9223 Mar 31 00:03 runtime_log.err
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc       663 Mar 31 00:03 qWhMDmsWZO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmG64LDm5nQgnn.diag
[2026-03-31 00:03:28] -rw-r--r--. 1 boinc boinc     21626 Mar 31 00:03 stderr.txt
[2026-03-31 00:03:28] HITS file was successfully produced:
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc 220517891 Mar 31 00:02 shared/HITS.pool.root.1
[2026-03-31 00:03:28]  *** Contents of shared directory: ***
[2026-03-31 00:03:28] total 437312
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc    597561 Mar 30 22:56 input.tar.gz
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc 225665095 Mar 30 22:56 ATLAS.root_0
[2026-03-31 00:03:28] -rw-r--r--. 2 boinc boinc     15845 Mar 30 22:56 start_atlas.sh
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc 220517891 Mar 31 00:02 HITS.pool.root.1
[2026-03-31 00:03:28] -rw-------. 1 boinc boinc    993280 Mar 31 00:03 result.tar.gz
00:03:29 (434180): run_atlas exited; CPU time 43052.926117
00:03:29 (434180): called boinc_finish(0)

</stderr_txt>
]]>

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