Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:57:55 (31529): wrapper (7.7.26015): starting
22:57:55 (31529): wrapper: running run_atlas (--nthreads 8)
[2026-03-29 22:57:55] Arguments: --nthreads 8
[2026-03-29 22:57:55] Threads: 8
[2026-03-29 22:57:55] Checking for CVMFS
[2026-03-29 22:57:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 22:57:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 22:57:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 22:57:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 22:57:55] 2.11.0.0 4541 243161 94620 157854 3 50 3539718 4096001 0 130560 2 9989405 99.574 12661271 399 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-29 22:57:55] CVMFS is ok
[2026-03-29 22:57:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 22:57:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 22:57:55] Further information can be found at the LHC@home message board.
[2026-03-29 22:57:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 22:57:55] Checking for apptainer binary...
[2026-03-29 22:57:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-29 22:57:55] apptainer is not installed, using version from CVMFS
[2026-03-29 22:57:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 22:57:55] WARNING: Environment variable TMPDIR already has value [/tmp/job_11429967/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node359
[2026-03-29 22:57:55] apptainer works
[2026-03-29 22:57:55] Set ATHENA_PROC_NUMBER=8
[2026-03-29 22:57:55] Set ATHENA_CORE_NUMBER=8
[2026-03-29 22:57:55] Starting ATLAS job with PandaID=7069726788
[2026-03-29 22:57:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11429967/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 23:45:13]  *** The last 200 lines of the pilot log: ***
[2026-03-29 23:45:13]  filesize=307347
[2026-03-29 23:45:13]  filetype=log
[2026-03-29 23:45:13]  guid=b245a046-9525-459a-aac9-7f1b5c116ec7
[2026-03-29 23:45:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-29 23:45:13]  is_altstaged=None
[2026-03-29 23:45:13]  is_tar=False
[2026-03-29 23:45:13]  lfn=log.49263208._003897.job.log.tgz.1
[2026-03-29 23:45:13]  mtime=0
[2026-03-29 23:45:13]  protocol_id=None
[2026-03-29 23:45:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-29 23:45:13]  replicas=None
[2026-03-29 23:45:13]  scope=mc23_13p6TeV
[2026-03-29 23:45:13]  status=None
[2026-03-29 23:45:13]  status_code=0
[2026-03-29 23:45:13]  storage_token=
[2026-03-29 23:45:13]  surl=/tmp/job_11429967/atlas/pilot/slots/0/PanDA_Pilot-7069726788/log.49263208._003897.job.log.tgz.1
[2026-03-29 23:45:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/97/log.49263208._003897.job.log.tgz.1
[2026-03-29 23:45:13]  workdir=None
[2026-03-29 23:45:13] ]
[2026-03-29 23:45:13] 2026-03-29 21:44:10,199 | INFO     | transferring file log.49263208._003897.job.log.tgz.1 from /tmp/job_11429967/atlas/pilot/slots/0/PanDA_Pilot-7069726788/log.49263208._003897.job.log.tgz.1 to /tmp/j
[2026-03-29 23:45:13] 2026-03-29 21:44:10,199 | INFO     | executing command: /usr/bin/env mv /tmp/job_11429967/atlas/pilot/slots/0/PanDA_Pilot-7069726788/log.49263208._003897.job.log.tgz.1 /tmp/job_11429967/atlas/pilot/sl
[2026-03-29 23:45:13] 2026-03-29 21:44:10,207 | INFO     | adding to output.list: log.49263208._003897.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/97/log.49263208._003897.job.log.tg
[2026-03-29 23:45:13] 2026-03-29 21:44:10,207 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-29 23:45:13] 2026-03-29 21:44:10,207 | INFO     | summary of transferred files:
[2026-03-29 23:45:13] 2026-03-29 21:44:10,207 | INFO     |  -- lfn=log.49263208._003897.job.log.tgz.1, status_code=0, status=transferred
[2026-03-29 23:45:13] 2026-03-29 21:44:10,207 | INFO     | stage-out finished correctly
[2026-03-29 23:45:13] 2026-03-29 21:44:10,987 | INFO     | time since job start (2768s) is within the limit (345600.0s)
[2026-03-29 23:45:13] 2026-03-29 21:44:11,564 | INFO     | monitor loop #211: job 0:7069726788 is in state 'finished'
[2026-03-29 23:45:13] 2026-03-29 21:44:11,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,588 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-29 23:45:13] 2026-03-29 21:44:12,637 | INFO     | job 7069726788 has state=finished
[2026-03-29 23:45:13] 2026-03-29 21:44:12,637 | INFO     | preparing for final server update for job 7069726788 in state='finished'
[2026-03-29 23:45:13] 2026-03-29 21:44:12,637 | INFO     | reading metadata from: /tmp/job_11429967/atlas/pilot/slots/0/PanDA_Pilot-7069726788/jobReport.json
[2026-03-29 23:45:13] 2026-03-29 21:44:12,638 | INFO     | added worker_node to metadata from /tmp/job_11429967/atlas/pilot/slots/0/workernode_map.json
[2026-03-29 23:45:13] 2026-03-29 21:44:12,638 | INFO     | this job has now completed (state=finished)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,638 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,638 | INFO     | log transfer has been attempted: DONE
[2026-03-29 23:45:13] 2026-03-29 21:44:12,638 | INFO     | job 7069726788 has finished - writing final server update
[2026-03-29 23:45:13] 2026-03-29 21:44:12,639 | INFO     | total number of processed events: 400 (read)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | INFO     | using path: /tmp/job_11429967/atlas/pilot/slots/0/PanDA_Pilot-7069726788/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | INFO     | extracted standard info from prmon json
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 23:45:13] 2026-03-29 21:44:12,657 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | fitting pss+swap vs Time
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | sum of square deviations: 18377363.589743607
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | sum of deviations: -3730484911.7435913
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | mean x: 1774819364.102564
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | mean y: 2659000.435897436
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | intersect: 360279410696.7516
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | chi2: 0.07298152819545688
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | current memory leak: -202.99 B/s (using 39 data points, chi2=0.07)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | could have reported an average CPU frequency of 2363 MHz (5 samples)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | ..............................
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | . Timing measurements:
[2026-03-29 23:45:13] 2026-03-29 21:44:12,658 | INFO     | . get job = 0 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . initial setup = 2 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . payload setup = 3 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . stage-in = 0 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . payload execution = 2748 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . stage-out = 0 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | . log creation = 0 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,659 | INFO     | ..............................
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | 
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | job summary report
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | --------------------------------------------------
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | PanDA job id: 7069726788
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | task id: 49263208
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | errors: (none)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | pilot state: finished 
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | transexitcode: 0
[2026-03-29 23:45:13] 2026-03-29 21:44:12,705 | INFO     | exeerrorcode: 0
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | exeerrordiag: 
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | exitcode: 0
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | exitmsg: OK
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | cpuconsumptiontime: 19962 s
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | nevents: 400
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | neventsw: 0
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | pid: 8019
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | pgrp: 8019
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | corecount: 8
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | event service: False
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | sizes: {0: 2279830, 1: 2280402, 11: 2280402, 2755: 2305873, 2756: 2305872, 2757: 2314956, 2759: 2315366}
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | --------------------------------------------------
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | 
[2026-03-29 23:45:13] 2026-03-29 21:44:12,706 | INFO     | executing command: ls -lF /tmp/job_11429967/atlas/pilot/slots/0
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,716 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 23:45:13] 2026-03-29 21:44:12,717 | INFO     | job 7069726788 has completed (purged errors)
[2026-03-29 23:45:13] 2026-03-29 21:44:12,717 | INFO     | overall cleanup function is called
[2026-03-29 23:45:13] 2026-03-29 21:44:13,722 | INFO     | --- collectZombieJob: --- 10, [8019]
[2026-03-29 23:45:13] 2026-03-29 21:44:13,723 | INFO     | zombie collector waiting for pid 8019
[2026-03-29 23:45:13] 2026-03-29 21:44:13,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 23:45:13] 2026-03-29 21:44:13,723 | INFO     | collected zombie processes
[2026-03-29 23:45:13] 2026-03-29 21:44:13,723 | INFO     | will attempt to kill all subprocesses of pid=8019
[2026-03-29 23:45:13] 2026-03-29 21:44:13,819 | INFO     | process IDs to be killed: [8019] (in reverse order)
[2026-03-29 23:45:13] 2026-03-29 21:44:13,851 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 23:45:13] 2026-03-29 21:44:13,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 23:45:13] 2026-03-29 21:44:13,855 | INFO     | did not find any defunct processes belonging to 8019
[2026-03-29 23:45:13] 2026-03-29 21:44:13,858 | INFO     | did not find any defunct processes belonging to 8019
[2026-03-29 23:45:13] 2026-03-29 21:44:13,858 | INFO     | ready for new job
[2026-03-29 23:45:13] 2026-03-29 21:44:13,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 23:45:13] 2026-03-29 21:44:13,859 | INFO     | **************************************
[2026-03-29 23:45:13] 2026-03-29 21:44:13,859 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 23:45:13] 2026-03-29 21:44:13,859 | INFO     | **************************************
[2026-03-29 23:45:13] 2026-03-29 21:44:13,859 | INFO     | 
[2026-03-29 23:45:13] 2026-03-29 21:44:13,873 | INFO     | architecture information:
[2026-03-29 23:45:13] 2026-03-29 21:44:13,873 | INFO     | executing command: cat /etc/os-release
[2026-03-29 23:45:13] 2026-03-29 21:44:13,879 | INFO     | cat /etc/os-release:
[2026-03-29 23:45:13] NAME="CentOS Linux"
[2026-03-29 23:45:13] VERSION="7 (Core)"
[2026-03-29 23:45:13] ID="centos"
[2026-03-29 23:45:13] ID_LIKE="rhel fedora"
[2026-03-29 23:45:13] VERSION_ID="7"
[2026-03-29 23:45:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 23:45:13] ANSI_COLOR="0;31"
[2026-03-29 23:45:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 23:45:13] HOME_URL="https://www.centos.org/"
[2026-03-29 23:45:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 23:45:13] 
[2026-03-29 23:45:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 23:45:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 23:45:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 23:45:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 23:45:13] 
[2026-03-29 23:45:13] 2026-03-29 21:44:13,879 | INFO     | **************************************
[2026-03-29 23:45:13] 2026-03-29 21:44:14,382 | INFO     | executing command: df -mP /tmp/job_11429967/atlas/pilot/slots/0
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | INFO     | sufficient remaining disk space (225358905344 B)
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | INFO     | update_server=False
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 23:45:13] 2026-03-29 21:44:14,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 23:45:13] 2026-03-29 21:44:14,559 | INFO     | all payload control threads have been joined
[2026-03-29 23:45:13] 2026-03-29 21:44:15,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 23:45:13] 2026-03-29 21:44:15,072 | INFO     | aborting loop
[2026-03-29 23:45:13] 2026-03-29 21:44:15,393 | INFO     | [job] retrieve thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:15,394 | INFO     | [job] queue monitor thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:15,423 | INFO     | all data control threads have been joined
[2026-03-29 23:45:13] 2026-03-29 21:44:15,523 | INFO     | all job control threads have been joined
[2026-03-29 23:45:13] 2026-03-29 21:44:15,564 | INFO     | [payload] control thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:15,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 23:45:13] 2026-03-29 21:44:15,931 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,077 | INFO     | [job] job monitor thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,103 | INFO     | [payload] failed_post thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,428 | INFO     | [data] control thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,473 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,478 | INFO     | [job] validate thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,528 | INFO     | [job] control thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,538 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,586 | INFO     | [payload] validate_post thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:16,776 | INFO     | [data] copytool_in thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:17,772 | INFO     | [data] copytool_out thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:18,394 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:24,957 | INFO     | job.realtimelogging is not enabled
[2026-03-29 23:45:13] 2026-03-29 21:44:25,962 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 23:45:13] 2026-03-29 21:44:44,177 | INFO     | PID=3110 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-29 23:45:13] 2026-03-29 21:44:44,177 | INFO     | .. there are 2 such processes running
[2026-03-29 23:45:13] 2026-03-29 21:44:44,177 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 23:45:13] 2026-03-29 21:44:44,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 23:45:13] 2026-03-29 21:44:44,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 23:45:13] 2026-03-29 21:45:06,797 | INFO     | [monitor] cgroup control has ended
[2026-03-29 23:45:13] 2026-03-29 21:45:08,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058988288)>']
[2026-03-29 23:45:13] 2026-03-29 21:45:09,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 23:45:13] 2026-03-29 21:45:09,303 | INFO     | [monitor] control thread has ended
[2026-03-29 23:45:13] 2026-03-29 21:45:13,532 | INFO     | all workflow threads have been joined
[2026-03-29 23:45:13] 2026-03-29 21:45:13,532 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 23:45:13] 2026-03-29 21:45:13,532 | INFO     | traces error code: 0
[2026-03-29 23:45:13] 2026-03-29 21:45:13,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 23:45:13] 2026-03-29 21:45:13,583 [wrapper] ==== pilot stdout END ====
[2026-03-29 23:45:13] 2026-03-29 21:45:13,584 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 23:45:13] 2026-03-29 21:45:13,585 [wrapper] pilotpid: 3110
[2026-03-29 23:45:13] 2026-03-29 21:45:13,586 [wrapper] Pilot exit status: 0
[2026-03-29 23:45:13] 2026-03-29 21:45:13,591 [wrapper] pandaids: 7069726788
[2026-03-29 23:45:13] 2026-03-29 21:45:13,612 [wrapper] cleanup supervisor_pilot  3640 3111
[2026-03-29 23:45:13] 2026-03-29 21:45:13,613 [wrapper] Test setup, not cleaning
[2026-03-29 23:45:13] 2026-03-29 21:45:13,615 [wrapper] apfmon messages muted
[2026-03-29 23:45:13] 2026-03-29 21:45:13,616 [wrapper] ==== wrapper stdout END ====
[2026-03-29 23:45:13] 2026-03-29 21:45:13,617 [wrapper] ==== wrapper stderr END ====
[2026-03-29 23:45:13]  *** Error codes and diagnostics ***
[2026-03-29 23:45:13]     "exeErrorCode": 0,
[2026-03-29 23:45:13]     "exeErrorDiag": "",
[2026-03-29 23:45:13]     "pilotErrorCode": 0,
[2026-03-29 23:45:13]     "pilotErrorDiag": "",
[2026-03-29 23:45:13]  *** Listing of results directory ***
[2026-03-29 23:45:13] total 410080
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user    585013 Mar 29 17:34 pilot3.tar.gz
[2026-03-29 23:45:13] -rwx------ 1 mf493845 unix-user     36322 Mar 29 17:35 runpilot2-wrapper.sh
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      5118 Mar 29 17:35 queuedata.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       100 Mar 29 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 23:45:13] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 29 22:01 run_atlas
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       105 Mar 29 22:01 job.xml
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 22:57 start_atlas.sh
[2026-03-29 23:45:13] drwxrwx--x 2 mf493845 unix-user       100 Mar 29 22:57 shared
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user    597537 Mar 29 22:57 input.tar.gz
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      6391 Mar 29 22:57 init_data.xml
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user 222079165 Mar 29 22:57 EVNT.49263206._000205.pool.root.1
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user         0 Mar 29 22:57 boinc_setup_complete
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      8192 Mar 29 22:57 boinc_mmap_file
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user         0 Mar 29 22:57 boinc_lockfile
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      2573 Mar 29 22:57 pandaJob.out
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user   1004063 Mar 29 22:58 agis_schedconf.cvmfs.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user   1511579 Mar 29 22:58 agis_ddmendpoints.agis.ALL.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       416 Mar 29 22:58 workernode_map.json
[2026-03-29 23:45:13] drwx------ 5 mf493845 unix-user       440 Mar 29 22:58 pilot3
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user 192437091 Mar 29 23:43 HITS.49263208._003897.pool.root.1
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      1018 Mar 29 23:44 memory_monitor_summary.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user    307347 Mar 29 23:44 log.49263208._003897.job.log.tgz.1
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      6318 Mar 29 23:44 heartbeat.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user        95 Mar 29 23:44 pilot_heartbeat.json
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      4902 Mar 29 23:45 pilotlog.txt
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user    437846 Mar 29 23:45 log.49263208._003897.job.log.1
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       357 Mar 29 23:45 output.list
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       620 Mar 29 23:45 runtime_log
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user    768000 Mar 29 23:45 result.tar.gz
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user      9219 Mar 29 23:45 runtime_log.err
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user       643 Mar 29 23:45 IeHODmfL7Q9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmwsKKDm4pLhOm.diag
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user     21707 Mar 29 23:45 stderr.txt
[2026-03-29 23:45:13] HITS file was successfully produced:
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user 192437091 Mar 29 23:43 shared/HITS.pool.root.1
[2026-03-29 23:45:13]  *** Contents of shared directory: ***
[2026-03-29 23:45:13] total 406156
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 22:57 start_atlas.sh
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user    597537 Mar 29 22:57 input.tar.gz
[2026-03-29 23:45:13] -rw-r--r-- 2 mf493845 unix-user 222079165 Mar 29 22:57 ATLAS.root_0
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user 192437091 Mar 29 23:43 HITS.pool.root.1
[2026-03-29 23:45:13] -rw------- 1 mf493845 unix-user    768000 Mar 29 23:45 result.tar.gz
23:45:14 (31529): run_atlas exited; CPU time 19996.040730
23:45:14 (31529): called boinc_finish(0)

</stderr_txt>
]]>

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