Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:46:44 (7292): wrapper (7.7.26015): starting
21:46:44 (7292): wrapper: running run_atlas (--nthreads 8)
[2026-03-29 21:46:44] Arguments: --nthreads 8
[2026-03-29 21:46:44] Threads: 8
[2026-03-29 21:46:44] Checking for CVMFS
[2026-03-29 21:46:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 21:46:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 21:46:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 21:46:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 21:46:45] 2.11.0.0 11534 243227 83616 157853 2 188 4029077 4096000 1834 130560 3 15850445 99.658 13365217 380 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-29 21:46:45] CVMFS is ok
[2026-03-29 21:46:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 21:46:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 21:46:45] Further information can be found at the LHC@home message board.
[2026-03-29 21:46:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 21:46:45] Checking for apptainer binary...
[2026-03-29 21:46:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-29 21:46:45] apptainer is not installed, using version from CVMFS
[2026-03-29 21:46:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 21:46:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_11429551/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node376
[2026-03-29 21:46:45] apptainer works
[2026-03-29 21:46:45] Set ATHENA_PROC_NUMBER=8
[2026-03-29 21:46:45] Set ATHENA_CORE_NUMBER=8
[2026-03-29 21:46:45] Starting ATLAS job with PandaID=7069699974
[2026-03-29 21:46:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11429551/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 22:33:21]  *** The last 200 lines of the pilot log: ***
[2026-03-29 22:33:21]  filetype=log
[2026-03-29 22:33:21]  guid=be996f95-9d5f-40e5-937c-5a574a27c3f8
[2026-03-29 22:33:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-29 22:33:21]  is_altstaged=None
[2026-03-29 22:33:21]  is_tar=False
[2026-03-29 22:33:21]  lfn=log.49263191._001693.job.log.tgz.1
[2026-03-29 22:33:21]  mtime=0
[2026-03-29 22:33:21]  protocol_id=None
[2026-03-29 22:33:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-29 22:33:21]  replicas=None
[2026-03-29 22:33:21]  scope=mc23_13p6TeV
[2026-03-29 22:33:21]  status=None
[2026-03-29 22:33:21]  status_code=0
[2026-03-29 22:33:21]  storage_token=
[2026-03-29 22:33:21]  surl=/tmp/job_11429551/atlas/pilot/slots/0/PanDA_Pilot-7069699974/log.49263191._001693.job.log.tgz.1
[2026-03-29 22:33:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/86/log.49263191._001693.job.log.tgz.1
[2026-03-29 22:33:21]  workdir=None
[2026-03-29 22:33:21] ]
[2026-03-29 22:33:21] 2026-03-29 20:32:46,961 | INFO     | transferring file log.49263191._001693.job.log.tgz.1 from /tmp/job_11429551/atlas/pilot/slots/0/PanDA_Pilot-7069699974/log.49263191._001693.job.log.tgz.1 to /tmp/j
[2026-03-29 22:33:21] 2026-03-29 20:32:46,961 | INFO     | executing command: /usr/bin/env mv /tmp/job_11429551/atlas/pilot/slots/0/PanDA_Pilot-7069699974/log.49263191._001693.job.log.tgz.1 /tmp/job_11429551/atlas/pilot/sl
[2026-03-29 22:33:21] 2026-03-29 20:32:46,969 | INFO     | adding to output.list: log.49263191._001693.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/86/log.49263191._001693.job.log.tg
[2026-03-29 22:33:21] 2026-03-29 20:32:46,969 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-29 22:33:21] 2026-03-29 20:32:46,969 | INFO     | summary of transferred files:
[2026-03-29 22:33:21] 2026-03-29 20:32:46,970 | INFO     |  -- lfn=log.49263191._001693.job.log.tgz.1, status_code=0, status=transferred
[2026-03-29 22:33:21] 2026-03-29 20:32:46,970 | INFO     | stage-out finished correctly
[2026-03-29 22:33:21] 2026-03-29 20:32:47,955 | INFO     | time since job start (2756s) is within the limit (345600.0s)
[2026-03-29 22:33:21] 2026-03-29 20:32:47,991 | INFO     | monitor loop #211: job 0:7069699974 is in state 'finished'
[2026-03-29 22:33:21] 2026-03-29 20:32:47,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-29 22:33:21] 2026-03-29 20:32:48,164 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-29 22:33:21] 2026-03-29 20:32:48,907 | INFO     | job 7069699974 has state=finished
[2026-03-29 22:33:21] 2026-03-29 20:32:48,907 | INFO     | preparing for final server update for job 7069699974 in state='finished'
[2026-03-29 22:33:21] 2026-03-29 20:32:49,463 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,463 | INFO     | reading metadata from: /tmp/job_11429551/atlas/pilot/slots/0/PanDA_Pilot-7069699974/jobReport.json
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | added worker_node to metadata from /tmp/job_11429551/atlas/pilot/slots/0/workernode_map.json
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | this job has now completed (state=finished)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | log transfer has been attempted: DONE
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | job 7069699974 has finished - writing final server update
[2026-03-29 22:33:21] 2026-03-29 20:32:49,464 | INFO     | total number of processed events: 400 (read)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | INFO     | using path: /tmp/job_11429551/atlas/pilot/slots/0/PanDA_Pilot-7069699974/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | INFO     | extracted standard info from prmon json
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 22:33:21] 2026-03-29 20:32:49,482 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | fitting pss+swap vs Time
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | sum of square deviations: 17003109.5
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | sum of deviations: -720529133.0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | mean x: 1774815061.5
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | mean y: 2551187.8421052634
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | intersect: 75212674224.33354
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | chi2: 0.003553537585142673
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | current memory leak: -42.38 B/s (using 38 data points, chi2=0.00)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,483 | INFO     | could have reported an average CPU frequency of 2612 MHz (5 samples)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | ..............................
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . Timing measurements:
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . get job = 0 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . initial setup = 2 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . payload setup = 3 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . stage-in = 0 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . payload execution = 2736 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . stage-out = 0 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | . log creation = 0 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,484 | INFO     | ..............................
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | 
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | job summary report
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | --------------------------------------------------
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | PanDA job id: 7069699974
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | task id: 49263191
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | errors: (none)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | pilot state: finished 
[2026-03-29 22:33:21] 2026-03-29 20:32:49,530 | INFO     | transexitcode: 0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | exeerrorcode: 0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | exeerrordiag: 
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | exitcode: 0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | exitmsg: OK
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | cpuconsumptiontime: 19835 s
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | nevents: 400
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | neventsw: 0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | pid: 18000
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | pgrp: 18000
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | corecount: 8
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | event service: False
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | sizes: {0: 2280323, 11: 2280323, 2742: 2305761, 2744: 2314789, 2745: 2314845, 2746: 2315071}
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | --------------------------------------------------
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | 
[2026-03-29 22:33:21] 2026-03-29 20:32:49,531 | INFO     | executing command: ls -lF /tmp/job_11429551/atlas/pilot/slots/0
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,540 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | job 7069699974 has completed (purged errors)
[2026-03-29 22:33:21] 2026-03-29 20:32:49,541 | INFO     | overall cleanup function is called
[2026-03-29 22:33:21] 2026-03-29 20:32:50,547 | INFO     | --- collectZombieJob: --- 10, [18000]
[2026-03-29 22:33:21] 2026-03-29 20:32:50,547 | INFO     | zombie collector waiting for pid 18000
[2026-03-29 22:33:21] 2026-03-29 20:32:50,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 22:33:21] 2026-03-29 20:32:50,547 | INFO     | collected zombie processes
[2026-03-29 22:33:21] 2026-03-29 20:32:50,547 | INFO     | will attempt to kill all subprocesses of pid=18000
[2026-03-29 22:33:21] 2026-03-29 20:32:50,645 | INFO     | process IDs to be killed: [18000] (in reverse order)
[2026-03-29 22:33:21] 2026-03-29 20:32:50,679 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 22:33:21] 2026-03-29 20:32:50,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 22:33:21] 2026-03-29 20:32:50,682 | INFO     | did not find any defunct processes belonging to 18000
[2026-03-29 22:33:21] 2026-03-29 20:32:50,685 | INFO     | did not find any defunct processes belonging to 18000
[2026-03-29 22:33:21] 2026-03-29 20:32:50,685 | INFO     | ready for new job
[2026-03-29 22:33:21] 2026-03-29 20:32:50,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 22:33:21] 2026-03-29 20:32:50,686 | INFO     | **************************************
[2026-03-29 22:33:21] 2026-03-29 20:32:50,686 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 22:33:21] 2026-03-29 20:32:50,686 | INFO     | **************************************
[2026-03-29 22:33:21] 2026-03-29 20:32:50,686 | INFO     | 
[2026-03-29 22:33:21] 2026-03-29 20:32:50,699 | INFO     | architecture information:
[2026-03-29 22:33:21] 2026-03-29 20:32:50,699 | INFO     | executing command: cat /etc/os-release
[2026-03-29 22:33:21] 2026-03-29 20:32:50,705 | INFO     | cat /etc/os-release:
[2026-03-29 22:33:21] NAME="CentOS Linux"
[2026-03-29 22:33:21] VERSION="7 (Core)"
[2026-03-29 22:33:21] ID="centos"
[2026-03-29 22:33:21] ID_LIKE="rhel fedora"
[2026-03-29 22:33:21] VERSION_ID="7"
[2026-03-29 22:33:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 22:33:21] ANSI_COLOR="0;31"
[2026-03-29 22:33:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 22:33:21] HOME_URL="https://www.centos.org/"
[2026-03-29 22:33:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 22:33:21] 
[2026-03-29 22:33:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 22:33:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 22:33:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 22:33:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 22:33:21] 
[2026-03-29 22:33:21] 2026-03-29 20:32:50,706 | INFO     | **************************************
[2026-03-29 22:33:21] 2026-03-29 20:32:51,207 | INFO     | executing command: df -mP /tmp/job_11429551/atlas/pilot/slots/0
[2026-03-29 22:33:21] 2026-03-29 20:32:51,213 | INFO     | sufficient remaining disk space (224489635840 B)
[2026-03-29 22:33:21] 2026-03-29 20:32:51,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 22:33:21] 2026-03-29 20:32:51,213 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 22:33:21] 2026-03-29 20:32:51,213 | INFO     | update_server=False
[2026-03-29 22:33:21] 2026-03-29 20:32:51,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 22:33:21] 2026-03-29 20:32:51,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 22:33:21] 2026-03-29 20:32:51,329 | INFO     | all data control threads have been joined
[2026-03-29 22:33:21] 2026-03-29 20:32:51,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 22:33:21] 2026-03-29 20:32:51,499 | INFO     | aborting loop
[2026-03-29 22:33:21] 2026-03-29 20:32:51,641 | INFO     | all payload control threads have been joined
[2026-03-29 22:33:21] 2026-03-29 20:32:52,219 | INFO     | [job] retrieve thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,219 | INFO     | [job] queue monitor thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,264 | INFO     | [data] copytool_in thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,264 | INFO     | all job control threads have been joined
[2026-03-29 22:33:21] 2026-03-29 20:32:52,307 | INFO     | [payload] failed_post thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,334 | INFO     | [data] control thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,493 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,504 | INFO     | [job] job monitor thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 22:33:21] 2026-03-29 20:32:52,646 | INFO     | [payload] control thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:52,937 | INFO     | [payload] validate_post thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:53,269 | INFO     | [job] control thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:53,468 | INFO     | [job] validate thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:53,636 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:53,715 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:54,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 22:33:21] 2026-03-29 20:32:54,538 | INFO     | [data] copytool_out thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:32:55,967 | INFO     | [monitor] cgroup control has ended
[2026-03-29 22:33:21] 2026-03-29 20:32:58,219 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:33:01,771 | INFO     | job.realtimelogging is not enabled
[2026-03-29 22:33:21] 2026-03-29 20:33:02,776 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 22:33:21] 2026-03-29 20:33:02,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054785792)>']
[2026-03-29 22:33:21] 2026-03-29 20:33:07,912 | INFO     | all workflow threads have been joined
[2026-03-29 22:33:21] 2026-03-29 20:33:07,912 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 22:33:21] 2026-03-29 20:33:07,912 | INFO     | traces error code: 0
[2026-03-29 22:33:21] 2026-03-29 20:33:07,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | INFO     | PID=12163 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | INFO     | .. there are 3 such processes running
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 22:33:21] 2026-03-29 20:33:21,138 | INFO     | [monitor] control thread has ended
[2026-03-29 22:33:21] 2026-03-29 20:33:21,191 [wrapper] ==== pilot stdout END ====
[2026-03-29 22:33:21] 2026-03-29 20:33:21,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 22:33:21] 2026-03-29 20:33:21,194 [wrapper] pilotpid: 12163
[2026-03-29 22:33:21] 2026-03-29 20:33:21,195 [wrapper] Pilot exit status: 0
[2026-03-29 22:33:21] 2026-03-29 20:33:21,199 [wrapper] pandaids: 7069699974
[2026-03-29 22:33:21] 2026-03-29 20:33:21,222 [wrapper] cleanup supervisor_pilot   570 12164
[2026-03-29 22:33:21] 2026-03-29 20:33:21,223 [wrapper] Test setup, not cleaning
[2026-03-29 22:33:21] 2026-03-29 20:33:21,224 [wrapper] apfmon messages muted
[2026-03-29 22:33:21] 2026-03-29 20:33:21,225 [wrapper] ==== wrapper stdout END ====
[2026-03-29 22:33:21] 2026-03-29 20:33:21,226 [wrapper] ==== wrapper stderr END ====
[2026-03-29 22:33:21]  *** Error codes and diagnostics ***
[2026-03-29 22:33:21]     "exeErrorCode": 0,
[2026-03-29 22:33:21]     "exeErrorDiag": "",
[2026-03-29 22:33:21]     "pilotErrorCode": 0,
[2026-03-29 22:33:21]     "pilotErrorDiag": "",
[2026-03-29 22:33:21]  *** Listing of results directory ***
[2026-03-29 22:33:21] total 408944
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user    585013 Mar 29 14:32 pilot3.tar.gz
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      5118 Mar 29 14:32 queuedata.json
[2026-03-29 22:33:21] -rwx------ 1 mf493845 unix-user     36322 Mar 29 14:33 runpilot2-wrapper.sh
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       100 Mar 29 20:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 22:33:21] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 29 20:49 run_atlas
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       105 Mar 29 20:49 job.xml
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user 224227810 Mar 29 21:46 EVNT.49263189._000068.pool.root.1
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 21:46 start_atlas.sh
[2026-03-29 22:33:21] drwxrwx--x 2 mf493845 unix-user       100 Mar 29 21:46 shared
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user    597539 Mar 29 21:46 input.tar.gz
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      6391 Mar 29 21:46 init_data.xml
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user         0 Mar 29 21:46 boinc_setup_complete
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      8192 Mar 29 21:46 boinc_mmap_file
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user         0 Mar 29 21:46 boinc_lockfile
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      2573 Mar 29 21:46 pandaJob.out
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user   1004063 Mar 29 21:46 agis_schedconf.cvmfs.json
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user   1511579 Mar 29 21:46 agis_ddmendpoints.agis.ALL.json
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       416 Mar 29 21:46 workernode_map.json
[2026-03-29 22:33:21] drwx------ 5 mf493845 unix-user       440 Mar 29 21:46 pilot3
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user 189142770 Mar 29 22:32 HITS.49263191._001693.pool.root.1
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user        95 Mar 29 22:32 pilot_heartbeat.json
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      1014 Mar 29 22:32 memory_monitor_summary.json
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user    302913 Mar 29 22:32 log.49263191._001693.job.log.tgz.1
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      6305 Mar 29 22:32 heartbeat.json
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       820 Mar 29 22:33 pilotlog.txt
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user    441367 Mar 29 22:33 log.49263191._001693.job.log.1
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       357 Mar 29 22:33 output.list
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       620 Mar 29 22:33 runtime_log
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user    757760 Mar 29 22:33 result.tar.gz
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user      9219 Mar 29 22:33 runtime_log.err
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user       641 Mar 29 22:33 2YtNDmXV4Q9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmtVKKDmATSFYn.diag
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user     21772 Mar 29 22:33 stderr.txt
[2026-03-29 22:33:21] HITS file was successfully produced:
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user 189142770 Mar 29 22:32 shared/HITS.pool.root.1
[2026-03-29 22:33:21]  *** Contents of shared directory: ***
[2026-03-29 22:33:21] total 405028
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user 224227810 Mar 29 21:46 ATLAS.root_0
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 21:46 start_atlas.sh
[2026-03-29 22:33:21] -rw-r--r-- 2 mf493845 unix-user    597539 Mar 29 21:46 input.tar.gz
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user 189142770 Mar 29 22:32 HITS.pool.root.1
[2026-03-29 22:33:21] -rw------- 1 mf493845 unix-user    757760 Mar 29 22:33 result.tar.gz
22:33:22 (7292): run_atlas exited; CPU time 19869.553418
22:33:22 (7292): called boinc_finish(0)

</stderr_txt>
]]>

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