Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:00:03 (2007330): wrapper (7.7.26015): starting
15:00:03 (2007330): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 15:00:03] Arguments: --nthreads 4
[2026-03-30 15:00:03] Threads: 4
[2026-03-30 15:00:03] Checking for CVMFS
[2026-03-30 15:00:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 15:00:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 15:00:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 15:00:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 15:00:04] 2.9.2.0 1501249 3612 90620 157881 3 50 32276112 36864000 0 130560 0 1719571 99.985 132889 20780 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 15:00:04] CVMFS is ok
[2026-03-30 15:00:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 15:00:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 15:00:04] Further information can be found at the LHC@home message board.
[2026-03-30 15:00:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 15:00:04] Checking for apptainer binary...
[2026-03-30 15:00:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 15:00:04] Running /usr/bin/apptainer --version
[2026-03-30 15:00:04] apptainer version 1.4.1-1.1
[2026-03-30 15:00:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 15:00:04] thA314
[2026-03-30 15:00:04] apptainer works
[2026-03-30 15:00:04] Set ATHENA_PROC_NUMBER=4
[2026-03-30 15:00:04] Set ATHENA_CORE_NUMBER=4
[2026-03-30 15:00:04] Starting ATLAS job with PandaID=7069741051
[2026-03-30 15:00:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 16:12:37]  *** The last 200 lines of the pilot log: ***
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | job 7069741051 has completed (purged errors)
[2026-03-30 16:12:37] 2026-03-30 14:12:05,850 | INFO     | overall cleanup function is called
[2026-03-30 16:12:37] 2026-03-30 14:12:06,857 | INFO     | --- collectZombieJob: --- 10, [2016009]
[2026-03-30 16:12:37] 2026-03-30 14:12:06,857 | INFO     | zombie collector waiting for pid 2016009
[2026-03-30 16:12:37] 2026-03-30 14:12:06,857 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 16:12:37] 2026-03-30 14:12:06,857 | INFO     | collected zombie processes
[2026-03-30 16:12:37] 2026-03-30 14:12:06,857 | INFO     | will attempt to kill all subprocesses of pid=2016009
[2026-03-30 16:12:37] 2026-03-30 14:12:06,906 | INFO     | process IDs to be killed: [2016009] (in reverse order)
[2026-03-30 16:12:37] 2026-03-30 14:12:06,942 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 16:12:37] 2026-03-30 14:12:06,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 16:12:37] 2026-03-30 14:12:06,944 | INFO     | did not find any defunct processes belonging to 2016009
[2026-03-30 16:12:37] 2026-03-30 14:12:06,946 | INFO     | did not find any defunct processes belonging to 2016009
[2026-03-30 16:12:37] 2026-03-30 14:12:06,946 | INFO     | ready for new job
[2026-03-30 16:12:37] 2026-03-30 14:12:06,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 16:12:37] 2026-03-30 14:12:06,947 | INFO     | **************************************
[2026-03-30 16:12:37] 2026-03-30 14:12:06,947 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 16:12:37] 2026-03-30 14:12:06,947 | INFO     | **************************************
[2026-03-30 16:12:37] 2026-03-30 14:12:06,947 | INFO     | 
[2026-03-30 16:12:37] 2026-03-30 14:12:06,947 | INFO     | architecture information:
[2026-03-30 16:12:37] 2026-03-30 14:12:06,948 | INFO     | executing command: cat /etc/os-release
[2026-03-30 16:12:37] 2026-03-30 14:12:06,962 | INFO     | cat /etc/os-release:
[2026-03-30 16:12:37] NAME="CentOS Linux"
[2026-03-30 16:12:37] VERSION="7 (Core)"
[2026-03-30 16:12:37] ID="centos"
[2026-03-30 16:12:37] ID_LIKE="rhel fedora"
[2026-03-30 16:12:37] VERSION_ID="7"
[2026-03-30 16:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 16:12:37] ANSI_COLOR="0;31"
[2026-03-30 16:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 16:12:37] HOME_URL="https://www.centos.org/"
[2026-03-30 16:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 16:12:37] 
[2026-03-30 16:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 16:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 16:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 16:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 16:12:37] 
[2026-03-30 16:12:37] 2026-03-30 14:12:06,962 | INFO     | **************************************
[2026-03-30 16:12:37] 2026-03-30 14:12:07,466 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | INFO     | sufficient remaining disk space (226314158080 B)
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | INFO     | update_server=False
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 16:12:37] 2026-03-30 14:12:07,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 16:12:37] 2026-03-30 14:12:07,679 | INFO     | all data control threads have been joined
[2026-03-30 16:12:37] 2026-03-30 14:12:07,905 | INFO     | all payload control threads have been joined
[2026-03-30 16:12:37] 2026-03-30 14:12:08,182 | INFO     | all job control threads have been joined
[2026-03-30 16:12:37] 2026-03-30 14:12:08,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 16:12:37] 2026-03-30 14:12:08,312 | INFO     | aborting loop
[2026-03-30 16:12:37] 2026-03-30 14:12:08,490 | INFO     | [job] retrieve thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:08,558 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:08,569 | INFO     | [data] copytool_in thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:08,684 | INFO     | [data] control thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:08,910 | INFO     | [payload] control thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,047 | INFO     | [payload] failed_post thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,188 | INFO     | [job] control thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,318 | INFO     | [job] job monitor thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,490 | INFO     | [data] copytool_out thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,525 | INFO     | [payload] validate_post thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,728 | INFO     | [job] validate thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,851 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,936 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:09,946 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:10,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 16:12:37] 2026-03-30 14:12:10,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 16:12:37] 2026-03-30 14:12:11,489 | INFO     | [job] queue monitor thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:14,498 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 16:12:37] 2026-03-30 14:12:22,064 | INFO     | [monitor] cgroup control has ended
[2026-03-30 16:12:37] 2026-03-30 14:12:22,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140610089011008)>', '<ExcThread(monitor, started 140609310422784)>']
[2026-03-30 16:12:37] 2026-03-30 14:12:27,434 | INFO     | all workflow threads have been joined
[2026-03-30 16:12:37] 2026-03-30 14:12:27,434 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 16:12:37] 2026-03-30 14:12:27,434 | INFO     | traces error code: 0
[2026-03-30 16:12:37] 2026-03-30 14:12:27,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | INFO     | PID=2011446 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | CRITICAL | thread 'MainThread' is not alive
[2026-03-30 16:12:37] 2026-03-30 14:12:37,220 | INFO     | [monitor] control thread has ended
[2026-03-30 16:12:37] 2026-03-30 14:12:37,298 [wrapper] ==== pilot stdout END ====
[2026-03-30 16:12:37] 2026-03-30 14:12:37,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 16:12:37] 2026-03-30 14:12:37,307 [wrapper] pilotpid: 2011446
[2026-03-30 16:12:37] 2026-03-30 14:12:37,311 [wrapper] Pilot exit status: 0
[2026-03-30 16:12:37] 2026-03-30 14:12:37,323 [wrapper] pandaids: 7069741051
[2026-03-30 16:12:37] 2026-03-30 14:12:37,346 [wrapper] cleanup supervisor_pilot 2022136 2011447
[2026-03-30 16:12:37] 2026-03-30 14:12:37,350 [wrapper] Test setup, not cleaning
[2026-03-30 16:12:37] 2026-03-30 14:12:37,354 [wrapper] apfmon messages muted
[2026-03-30 16:12:37] 2026-03-30 14:12:37,358 [wrapper] ==== wrapper stdout END ====
[2026-03-30 16:12:37] 2026-03-30 14:12:37,362 [wrapper] ==== wrapper stderr END ====
[2026-03-30 16:12:37]  *** Error codes and diagnostics ***
[2026-03-30 16:12:37]     "exeErrorCode": 0,
[2026-03-30 16:12:37]     "exeErrorDiag": "",
[2026-03-30 16:12:37]     "pilotErrorCode": 0,
[2026-03-30 16:12:37]     "pilotErrorDiag": "",
[2026-03-30 16:12:37]  *** Listing of results directory ***
[2026-03-30 16:12:37] total 412208
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc    585013 Mar 29 19:08 pilot3.tar.gz
[2026-03-30 16:12:37] -rwx------ 1 boinc boinc     36322 Mar 29 19:12 runpilot2-wrapper.sh
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc      5118 Mar 29 19:14 queuedata.json
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc       100 Mar 30 15:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 16:12:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 15:00 run_atlas
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc       105 Mar 30 15:00 job.xml
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc 223585594 Mar 30 15:00 EVNT.49263198._000111.pool.root.1
[2026-03-30 16:12:37] drwxrwx--x 2 boinc boinc      4096 Mar 30 15:00 shared
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc    597541 Mar 30 15:00 input.tar.gz
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc     15845 Mar 30 15:00 start_atlas.sh
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc         0 Mar 30 15:00 boinc_setup_complete
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc      6376 Mar 30 15:00 init_data.xml
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc         0 Mar 30 15:00 boinc_lockfile
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc      2573 Mar 30 15:00 pandaJob.out
[2026-03-30 16:12:37] -rw------- 1 boinc boinc   1003985 Mar 30 15:00 agis_schedconf.cvmfs.json
[2026-03-30 16:12:37] -rw------- 1 boinc boinc   1511579 Mar 30 15:00 agis_ddmendpoints.agis.ALL.json
[2026-03-30 16:12:37] -rw------- 1 boinc boinc       420 Mar 30 15:00 workernode_map.json
[2026-03-30 16:12:37] drwx------ 5 boinc boinc      4096 Mar 30 15:00 pilot3
[2026-03-30 16:12:37] -rw------- 1 boinc boinc 192810451 Mar 30 16:11 HITS.49263200._002759.pool.root.1
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc       530 Mar 30 16:11 boinc_task_state.xml
[2026-03-30 16:12:37] -rw------- 1 boinc boinc      1019 Mar 30 16:11 memory_monitor_summary.json
[2026-03-30 16:12:37] -rw------- 1 boinc boinc    253581 Mar 30 16:12 log.49263200._002759.job.log.tgz.1
[2026-03-30 16:12:37] -rw------- 1 boinc boinc      6308 Mar 30 16:12 heartbeat.json
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc      8192 Mar 30 16:12 boinc_mmap_file
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc        27 Mar 30 16:12 wrapper_checkpoint.txt
[2026-03-30 16:12:37] -rw------- 1 boinc boinc       817 Mar 30 16:12 pilotlog.txt
[2026-03-30 16:12:37] -rw------- 1 boinc boinc        95 Mar 30 16:12 pilot_heartbeat.json
[2026-03-30 16:12:37] -rw------- 1 boinc boinc    638132 Mar 30 16:12 log.49263200._002759.job.log.1
[2026-03-30 16:12:37] -rw------- 1 boinc boinc       357 Mar 30 16:12 output.list
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc       620 Mar 30 16:12 runtime_log
[2026-03-30 16:12:37] -rw------- 1 boinc boinc    911360 Mar 30 16:12 result.tar.gz
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc      8896 Mar 30 16:12 runtime_log.err
[2026-03-30 16:12:37] -rw------- 1 boinc boinc       657 Mar 30 16:12 VSwKDmSr8Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDm9ONKDm1u2VLo.diag
[2026-03-30 16:12:37] -rw-r--r-- 1 boinc boinc     11709 Mar 30 16:12 stderr.txt
[2026-03-30 16:12:37] HITS file was successfully produced:
[2026-03-30 16:12:37] -rw------- 1 boinc boinc 192810451 Mar 30 16:11 shared/HITS.pool.root.1
[2026-03-30 16:12:37]  *** Contents of shared directory: ***
[2026-03-30 16:12:37] total 408140
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc 223585594 Mar 30 15:00 ATLAS.root_0
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc    597541 Mar 30 15:00 input.tar.gz
[2026-03-30 16:12:37] -rw-r--r-- 2 boinc boinc     15845 Mar 30 15:00 start_atlas.sh
[2026-03-30 16:12:37] -rw------- 1 boinc boinc 192810451 Mar 30 16:11 HITS.pool.root.1
[2026-03-30 16:12:37] -rw------- 1 boinc boinc    911360 Mar 30 16:12 result.tar.gz
16:12:39 (2007330): run_atlas exited; CPU time 15804.920772
16:12:39 (2007330): called boinc_finish(0)

</stderr_txt>
]]>

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