Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:11:41 (18176): wrapper (7.7.26015): starting
20:11:41 (18176): wrapper: running run_atlas (--nthreads 8)
[2026-03-29 20:11:41] Arguments: --nthreads 8
[2026-03-29 20:11:41] Threads: 8
[2026-03-29 20:11:41] Checking for CVMFS
[2026-03-29 20:11:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 20:11:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 20:11:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 20:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 20:11:42] 2.11.0.0 4219 242978 71872 157851 0 11 3254794 4096000 2751 130560 5 12222707 99.596 11262717 339 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-29 20:11:42] CVMFS is ok
[2026-03-29 20:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 20:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 20:11:42] Further information can be found at the LHC@home message board.
[2026-03-29 20:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 20:11:42] Checking for apptainer binary...
[2026-03-29 20:11:42] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-29 20:11:42] apptainer is not installed, using version from CVMFS
[2026-03-29 20:11:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 20:11:42] WARNING: Environment variable TMPDIR already has value [/tmp/job_11428876/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node305
[2026-03-29 20:11:42] apptainer works
[2026-03-29 20:11:42] Set ATHENA_PROC_NUMBER=8
[2026-03-29 20:11:42] Set ATHENA_CORE_NUMBER=8
[2026-03-29 20:11:42] Starting ATLAS job with PandaID=7069365490
[2026-03-29 20:11:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11428876/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 21:08:11]  *** The last 200 lines of the pilot log: ***
[2026-03-29 21:08:11]  filetype=log
[2026-03-29 21:08:11]  guid=3da65db0-7a63-49f8-bcf2-b9dbefe1603d
[2026-03-29 21:08:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-29 21:08:11]  is_altstaged=None
[2026-03-29 21:08:11]  is_tar=False
[2026-03-29 21:08:11]  lfn=log.48967094._017043.job.log.tgz.1
[2026-03-29 21:08:11]  mtime=0
[2026-03-29 21:08:11]  protocol_id=None
[2026-03-29 21:08:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-29 21:08:11]  replicas=None
[2026-03-29 21:08:11]  scope=mc23_13p6TeV
[2026-03-29 21:08:11]  status=None
[2026-03-29 21:08:11]  status_code=0
[2026-03-29 21:08:11]  storage_token=
[2026-03-29 21:08:11]  surl=/tmp/job_11428876/atlas/pilot/slots/0/PanDA_Pilot-7069365490/log.48967094._017043.job.log.tgz.1
[2026-03-29 21:08:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/55/log.48967094._017043.job.log.tgz.1
[2026-03-29 21:08:11]  workdir=None
[2026-03-29 21:08:11] ]
[2026-03-29 21:08:11] 2026-03-29 19:07:38,489 | INFO     | transferring file log.48967094._017043.job.log.tgz.1 from /tmp/job_11428876/atlas/pilot/slots/0/PanDA_Pilot-7069365490/log.48967094._017043.job.log.tgz.1 to /tmp/j
[2026-03-29 21:08:11] 2026-03-29 19:07:38,489 | INFO     | executing command: /usr/bin/env mv /tmp/job_11428876/atlas/pilot/slots/0/PanDA_Pilot-7069365490/log.48967094._017043.job.log.tgz.1 /tmp/job_11428876/atlas/pilot/sl
[2026-03-29 21:08:11] 2026-03-29 19:07:38,515 | INFO     | adding to output.list: log.48967094._017043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/55/log.48967094._017043.job.log.tg
[2026-03-29 21:08:11] 2026-03-29 19:07:38,515 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-29 21:08:11] 2026-03-29 19:07:38,515 | INFO     | summary of transferred files:
[2026-03-29 21:08:11] 2026-03-29 19:07:38,515 | INFO     |  -- lfn=log.48967094._017043.job.log.tgz.1, status_code=0, status=transferred
[2026-03-29 21:08:11] 2026-03-29 19:07:38,515 | INFO     | stage-out finished correctly
[2026-03-29 21:08:11] 2026-03-29 19:07:38,647 | INFO     | number of running child processes to parent process 28831: 1
[2026-03-29 21:08:11] 2026-03-29 19:07:38,647 | INFO     | maximum number of monitored processes: 6
[2026-03-29 21:08:11] 2026-03-29 19:07:39,135 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-29 21:08:11] 2026-03-29 19:07:39,184 | INFO     | job 7069365490 has state=finished
[2026-03-29 21:08:11] 2026-03-29 19:07:39,184 | INFO     | preparing for final server update for job 7069365490 in state='finished'
[2026-03-29 21:08:11] 2026-03-29 19:07:39,185 | INFO     | reading metadata from: /tmp/job_11428876/atlas/pilot/slots/0/PanDA_Pilot-7069365490/jobReport.json
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | added worker_node to metadata from /tmp/job_11428876/atlas/pilot/slots/0/workernode_map.json
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | this job has now completed (state=finished)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | log transfer has been attempted: DONE
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | job 7069365490 has finished - writing final server update
[2026-03-29 21:08:11] 2026-03-29 19:07:39,186 | INFO     | total number of processed events: 400 (read)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,203 | INFO     | using path: /tmp/job_11428876/atlas/pilot/slots/0/PanDA_Pilot-7069365490/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,204 | INFO     | extracted standard info from prmon json
[2026-03-29 21:08:11] 2026-03-29 19:07:39,204 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 21:08:11] 2026-03-29 19:07:39,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 21:08:11] 2026-03-29 19:07:39,204 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 21:08:11] 2026-03-29 19:07:39,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | fitting pss+swap vs Time
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | sum of square deviations: 34277852.0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | sum of deviations: 421624131.0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | mean x: 1774809667.5
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | mean y: 2519694.125
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | intersect: -21827978428.980453
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | chi2: 0.0005653131031364458
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | current memory leak: 12.30 B/s (using 48 data points, chi2=0.00)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | could have reported an average CPU frequency of 2738 MHz (5 samples)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | ..............................
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | . Timing measurements:
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | . get job = 0 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | . initial setup = 2 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,205 | INFO     | . payload setup = 3 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,206 | INFO     | . stage-in = 0 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,206 | INFO     | . payload execution = 3327 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,206 | INFO     | . stage-out = 0 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,206 | INFO     | . log creation = 0 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,206 | INFO     | ..............................
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | 
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | job summary report
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | --------------------------------------------------
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | PanDA job id: 7069365490
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | task id: 48967094
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | errors: (none)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | pilot state: finished 
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | transexitcode: 0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | exeerrorcode: 0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | exeerrordiag: 
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | exitcode: 0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | exitmsg: OK
[2026-03-29 21:08:11] 2026-03-29 19:07:39,306 | INFO     | cpuconsumptiontime: 24857 s
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | nevents: 400
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | neventsw: 0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | pid: 28831
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | pgrp: 28831
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | corecount: 8
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | event service: False
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | sizes: {0: 2280044, 1: 2280334, 11: 2280334, 3334: 2306072, 3336: 2315100, 3337: 2315510}
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | --------------------------------------------------
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | 
[2026-03-29 21:08:11] 2026-03-29 19:07:39,307 | INFO     | executing command: ls -lF /tmp/job_11428876/atlas/pilot/slots/0
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | job 7069365490 has completed (purged errors)
[2026-03-29 21:08:11] 2026-03-29 19:07:39,317 | INFO     | overall cleanup function is called
[2026-03-29 21:08:11] 2026-03-29 19:07:40,323 | INFO     | --- collectZombieJob: --- 10, [28831]
[2026-03-29 21:08:11] 2026-03-29 19:07:40,323 | INFO     | zombie collector waiting for pid 28831
[2026-03-29 21:08:11] 2026-03-29 19:07:40,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 21:08:11] 2026-03-29 19:07:40,323 | INFO     | collected zombie processes
[2026-03-29 21:08:11] 2026-03-29 19:07:40,323 | INFO     | will attempt to kill all subprocesses of pid=28831
[2026-03-29 21:08:11] 2026-03-29 19:07:40,431 | INFO     | process IDs to be killed: [28831] (in reverse order)
[2026-03-29 21:08:11] 2026-03-29 19:07:40,468 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 21:08:11] 2026-03-29 19:07:40,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 21:08:11] 2026-03-29 19:07:40,472 | INFO     | did not find any defunct processes belonging to 28831
[2026-03-29 21:08:11] 2026-03-29 19:07:40,475 | INFO     | did not find any defunct processes belonging to 28831
[2026-03-29 21:08:11] 2026-03-29 19:07:40,475 | INFO     | ready for new job
[2026-03-29 21:08:11] 2026-03-29 19:07:40,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 21:08:11] 2026-03-29 19:07:40,476 | INFO     | **************************************
[2026-03-29 21:08:11] 2026-03-29 19:07:40,476 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 21:08:11] 2026-03-29 19:07:40,476 | INFO     | **************************************
[2026-03-29 21:08:11] 2026-03-29 19:07:40,476 | INFO     | 
[2026-03-29 21:08:11] 2026-03-29 19:07:40,490 | INFO     | architecture information:
[2026-03-29 21:08:11] 2026-03-29 19:07:40,490 | INFO     | executing command: cat /etc/os-release
[2026-03-29 21:08:11] 2026-03-29 19:07:40,496 | INFO     | cat /etc/os-release:
[2026-03-29 21:08:11] NAME="CentOS Linux"
[2026-03-29 21:08:11] VERSION="7 (Core)"
[2026-03-29 21:08:11] ID="centos"
[2026-03-29 21:08:11] ID_LIKE="rhel fedora"
[2026-03-29 21:08:11] VERSION_ID="7"
[2026-03-29 21:08:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 21:08:11] ANSI_COLOR="0;31"
[2026-03-29 21:08:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 21:08:11] HOME_URL="https://www.centos.org/"
[2026-03-29 21:08:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 21:08:11] 
[2026-03-29 21:08:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 21:08:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 21:08:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 21:08:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 21:08:11] 
[2026-03-29 21:08:11] 2026-03-29 19:07:40,496 | INFO     | **************************************
[2026-03-29 21:08:11] 2026-03-29 19:07:40,998 | INFO     | executing command: df -mP /tmp/job_11428876/atlas/pilot/slots/0
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | INFO     | sufficient remaining disk space (224006242304 B)
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | INFO     | update_server=False
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 21:08:11] 2026-03-29 19:07:41,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 21:08:11] 2026-03-29 19:07:41,004 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 21:08:11] 2026-03-29 19:07:41,150 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-29 21:08:11] 2026-03-29 19:07:41,150 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-29 21:08:11] 2026-03-29 19:07:41,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 21:08:11] 2026-03-29 19:07:41,150 | INFO     | will abort loop
[2026-03-29 21:08:11] 2026-03-29 19:07:41,446 | INFO     | all job control threads have been joined
[2026-03-29 21:08:11] 2026-03-29 19:07:41,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 21:08:11] 2026-03-29 19:07:41,643 | INFO     | all data control threads have been joined
[2026-03-29 21:08:11] 2026-03-29 19:07:41,688 | INFO     | all payload control threads have been joined
[2026-03-29 21:08:11] 2026-03-29 19:07:42,008 | INFO     | [job] queue monitor thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,009 | INFO     | [job] retrieve thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,049 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,075 | INFO     | [payload] failed_post thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,140 | INFO     | [job] validate thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,155 | INFO     | [job] job monitor thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,339 | INFO     | [data] copytool_in thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,345 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,346 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,379 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,451 | INFO     | [job] control thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,648 | INFO     | [data] control thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,693 | INFO     | [payload] control thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:42,724 | INFO     | [payload] validate_post thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:43,576 | INFO     | [data] copytool_out thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:45,009 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 21:08:11] 2026-03-29 19:07:56,731 | INFO     | [monitor] cgroup control has ended
[2026-03-29 21:08:11] 2026-03-29 19:07:57,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067393280)>']
[2026-03-29 21:08:11] 2026-03-29 19:08:02,792 | INFO     | all workflow threads have been joined
[2026-03-29 21:08:11] 2026-03-29 19:08:02,792 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 21:08:11] 2026-03-29 19:08:02,793 | INFO     | traces error code: 0
[2026-03-29 21:08:11] 2026-03-29 19:08:02,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 21:08:11] 2026-03-29 19:08:11,605 | INFO     | PID=22951 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | INFO     | .. there are 5 such processes running
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | CRITICAL | thread 'MainThread' is not alive
[2026-03-29 21:08:11] 2026-03-29 19:08:11,606 | INFO     | [monitor] control thread has ended
[2026-03-29 21:08:11] 2026-03-29 19:08:11,661 [wrapper] ==== pilot stdout END ====
[2026-03-29 21:08:11] 2026-03-29 19:08:11,662 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 21:08:11] 2026-03-29 19:08:11,664 [wrapper] pilotpid: 22951
[2026-03-29 21:08:11] 2026-03-29 19:08:11,665 [wrapper] Pilot exit status: 0
[2026-03-29 21:08:11] 2026-03-29 19:08:11,669 [wrapper] pandaids: 7069365490
[2026-03-29 21:08:11] 2026-03-29 19:08:11,693 [wrapper] cleanup supervisor_pilot 28778 22952
[2026-03-29 21:08:11] 2026-03-29 19:08:11,695 [wrapper] Test setup, not cleaning
[2026-03-29 21:08:11] 2026-03-29 19:08:11,696 [wrapper] apfmon messages muted
[2026-03-29 21:08:11] 2026-03-29 19:08:11,697 [wrapper] ==== wrapper stdout END ====
[2026-03-29 21:08:11] 2026-03-29 19:08:11,698 [wrapper] ==== wrapper stderr END ====
[2026-03-29 21:08:11]  *** Error codes and diagnostics ***
[2026-03-29 21:08:11]     "exeErrorCode": 0,
[2026-03-29 21:08:11]     "exeErrorDiag": "",
[2026-03-29 21:08:11]     "pilotErrorCode": 0,
[2026-03-29 21:08:11]     "pilotErrorDiag": "",
[2026-03-29 21:08:11]  *** Listing of results directory ***
[2026-03-29 21:08:11] total 418728
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user    585013 Mar 28 18:13 pilot3.tar.gz
[2026-03-29 21:08:11] -rwx------ 1 mf493845 unix-user     36322 Mar 28 18:17 runpilot2-wrapper.sh
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      5118 Mar 28 18:18 queuedata.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       100 Mar 29 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 21:08:11] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 29 19:16 run_atlas
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       105 Mar 29 19:16 job.xml
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 20:11 start_atlas.sh
[2026-03-29 21:08:11] drwxrwx--x 2 mf493845 unix-user       100 Mar 29 20:11 shared
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user    597547 Mar 29 20:11 input.tar.gz
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user 216834270 Mar 29 20:11 EVNT.48967092._000534.pool.root.1
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user         0 Mar 29 20:11 boinc_setup_complete
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      6390 Mar 29 20:11 init_data.xml
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      8192 Mar 29 20:11 boinc_mmap_file
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user         0 Mar 29 20:11 boinc_lockfile
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      2601 Mar 29 20:11 pandaJob.out
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user   1003389 Mar 29 20:11 agis_schedconf.cvmfs.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user   1511579 Mar 29 20:11 agis_ddmendpoints.agis.ALL.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       420 Mar 29 20:11 workernode_map.json
[2026-03-29 21:08:11] drwx------ 5 mf493845 unix-user       440 Mar 29 20:11 pilot3
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user 206370699 Mar 29 21:07 HITS.48967094._017043.pool.root.1
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      1018 Mar 29 21:07 memory_monitor_summary.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user    313411 Mar 29 21:07 log.48967094._017043.job.log.tgz.1
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      6317 Mar 29 21:07 heartbeat.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user        95 Mar 29 21:07 pilot_heartbeat.json
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       890 Mar 29 21:08 pilotlog.txt
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user    521053 Mar 29 21:08 log.48967094._017043.job.log.1
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       357 Mar 29 21:08 output.list
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       620 Mar 29 21:08 runtime_log
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user    849920 Mar 29 21:08 result.tar.gz
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user       643 Mar 29 21:08 xTMNDmaSmQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmlWIKDm5ABrGo.diag
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user      9219 Mar 29 21:08 runtime_log.err
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user     21713 Mar 29 21:08 stderr.txt
[2026-03-29 21:08:11] HITS file was successfully produced:
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user 206370699 Mar 29 21:07 shared/HITS.pool.root.1
[2026-03-29 21:08:11]  *** Contents of shared directory: ***
[2026-03-29 21:08:11] total 414724
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 29 20:11 start_atlas.sh
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user    597547 Mar 29 20:11 input.tar.gz
[2026-03-29 21:08:11] -rw-r--r-- 2 mf493845 unix-user 216834270 Mar 29 20:11 ATLAS.root_0
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user 206370699 Mar 29 21:07 HITS.pool.root.1
[2026-03-29 21:08:11] -rw------- 1 mf493845 unix-user    849920 Mar 29 21:08 result.tar.gz
21:08:12 (18176): run_atlas exited; CPU time 24899.363438
21:08:12 (18176): called boinc_finish(0)

</stderr_txt>
]]>

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