Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:13 (372482): wrapper (7.7.26015): starting
13:31:13 (372482): wrapper: running run_atlas (--nthreads 8)
[2026-03-29 13:31:13] Arguments: --nthreads 8
[2026-03-29 13:31:13] Threads: 8
[2026-03-29 13:31:13] Checking for CVMFS
[2026-03-29 13:31:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 13:31:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 13:31:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 13:31:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 13:31:15] 2.13.3.0 2282030 76131 429380 157850 3 92 32202885 32935936 24718 16776704 0 294789587 99.623 280322843 30408 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-29 13:31:15] CVMFS is ok
[2026-03-29 13:31:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 13:31:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 13:31:15] Further information can be found at the LHC@home message board.
[2026-03-29 13:31:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 13:31:15] Checking for apptainer binary...
[2026-03-29 13:31:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 13:31:15] Running /usr/bin/apptainer --version
[2026-03-29 13:31:15] apptainer version 1.4.5-2.el9
[2026-03-29 13:31:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 13:31:15] c6-12-27-1.aglt2.org
[2026-03-29 13:31:15] apptainer works
[2026-03-29 13:31:16] Set ATHENA_PROC_NUMBER=8
[2026-03-29 13:31:16] Set ATHENA_CORE_NUMBER=8
[2026-03-29 13:31:16] Starting ATLAS job with PandaID=7069365445
[2026-03-29 13:31:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 17:34:40]  *** The last 200 lines of the pilot log: ***
[2026-03-29 17:34:40] 2026-03-29 21:33:59,387 | INFO     | reading metadata from: /tmp/boinchome/slots/4/PanDA_Pilot-7069365445/jobReport.json
[2026-03-29 17:34:40] 2026-03-29 21:33:59,389 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/4/workernode_map.json
[2026-03-29 17:34:40] 2026-03-29 21:33:59,389 | INFO     | this job has now completed (state=finished)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,389 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,389 | INFO     | log transfer has been attempted: DONE
[2026-03-29 17:34:40] 2026-03-29 21:33:59,389 | INFO     | job 7069365445 has finished - writing final server update
[2026-03-29 17:34:40] 2026-03-29 21:33:59,390 | INFO     | total number of processed events: 400 (read)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,425 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-7069365445/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,426 | INFO     | extracted standard info from prmon json
[2026-03-29 17:34:40] 2026-03-29 21:33:59,426 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 17:34:40] 2026-03-29 21:33:59,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 17:34:40] 2026-03-29 21:33:59,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 17:34:40] 2026-03-29 21:33:59,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 17:34:40] 2026-03-29 21:33:59,431 | INFO     | fitting pss+swap vs Time
[2026-03-29 17:34:40] 2026-03-29 21:33:59,431 | INFO     | sum of square deviations: 4075702309.644084
[2026-03-29 17:34:40] 2026-03-29 21:33:59,433 | INFO     | sum of deviations: 33271243556.77115
[2026-03-29 17:34:40] 2026-03-29 21:33:59,433 | INFO     | mean x: 1774812826.7711864
[2026-03-29 17:34:40] 2026-03-29 21:33:59,433 | INFO     | mean y: 2471986.495762712
[2026-03-29 17:34:40] 2026-03-29 21:33:59,433 | INFO     | intersect: -14485884949.549025
[2026-03-29 17:34:40] 2026-03-29 21:33:59,434 | INFO     | chi2: 3.6604619333126283
[2026-03-29 17:34:40] 2026-03-29 21:33:59,434 | INFO     | sum of square deviations: 3822117074.2683935
[2026-03-29 17:34:40] 2026-03-29 21:33:59,436 | INFO     | sum of deviations: 46967996145.40691
[2026-03-29 17:34:40] 2026-03-29 21:33:59,436 | INFO     | mean x: 1774812674.2770562
[2026-03-29 17:34:40] 2026-03-29 21:33:59,436 | INFO     | mean y: 2480069.774891775
[2026-03-29 17:34:40] 2026-03-29 21:33:59,436 | INFO     | intersect: -21807263908.363262
[2026-03-29 17:34:40] 2026-03-29 21:33:59,437 | INFO     | chi2: 2.990745036122174
[2026-03-29 17:34:40] 2026-03-29 21:33:59,437 | INFO     | current chi2=2.990745036122174 (change=18.295966722002674 %)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,437 | INFO     | right removable region: 230
[2026-03-29 17:34:40] 2026-03-29 21:33:59,437 | INFO     | sum of square deviations: 3822078034.2683935
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | sum of deviations: -28184811590.818184
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | mean x: 1774812979.2770562
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | mean y: 2508806.090909091
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | intersect: 13090354993.783329
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | chi2: 0.9092118351495219
[2026-03-29 17:34:40] 2026-03-29 21:33:59,439 | INFO     | current chi2=0.9092118351495219 (change=75.16128150725754 %)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,440 | INFO     | sum of square deviations: 3579212236.938062
[2026-03-29 17:34:40] 2026-03-29 21:33:59,441 | INFO     | sum of deviations: -36180920840.9646
[2026-03-29 17:34:40] 2026-03-29 21:33:59,441 | INFO     | mean x: 1774813131.7787611
[2026-03-29 17:34:40] 2026-03-29 21:33:59,442 | INFO     | mean y: 2513794.8407079647
[2026-03-29 17:34:40] 2026-03-29 21:33:59,442 | INFO     | intersect: 17943437433.20137
[2026-03-29 17:34:40] 2026-03-29 21:33:59,442 | INFO     | chi2: 0.8394521028275306
[2026-03-29 17:34:40] 2026-03-29 21:33:59,442 | INFO     | current chi2=0.8394521028275306 (change=7.672549963069844 %)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,442 | INFO     | left removable region: 20
[2026-03-29 17:34:40] 2026-03-29 21:33:59,443 | INFO     | sum of square deviations: 2871564166.7809534
[2026-03-29 17:34:40] 2026-03-29 21:33:59,444 | INFO     | sum of deviations: -9206241777.323801
[2026-03-29 17:34:40] 2026-03-29 21:33:59,444 | INFO     | mean x: 1774813253.790476
[2026-03-29 17:34:40] 2026-03-29 21:33:59,444 | INFO     | mean y: 2514398.038095238
[2026-03-29 17:34:40] 2026-03-29 21:33:59,444 | INFO     | intersect: 5692570052.378715
[2026-03-29 17:34:40] 2026-03-29 21:33:59,445 | INFO     | chi2: 0.08177565865263677
[2026-03-29 17:34:40] 2026-03-29 21:33:59,445 | INFO     | current memory leak: -3.21 B/s (using 210 data points, chi2=0.08)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,445 | INFO     | could have reported an average CPU frequency of 2682 MHz (12 samples)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | ..............................
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . Timing measurements:
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . get job = 0 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . initial setup = 32 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . payload setup = 51 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . stage-in = 0 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . payload execution = 14390 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . stage-out = 4 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | . log creation = 0 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,446 | INFO     | ..............................
[2026-03-29 17:34:40] 2026-03-29 21:33:59,510 | INFO     | time since job start (14469s) is within the limit (345600.0s)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | 
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | job summary report
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | --------------------------------------------------
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | PanDA job id: 7069365445
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | task id: 48967094
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | errors: (none)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,539 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | pilot state: finished 
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | transexitcode: 0
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | exeerrorcode: 0
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | exeerrordiag: 
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | exitcode: 0
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | exitmsg: OK
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | cpuconsumptiontime: 50833 s
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | nevents: 400
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | neventsw: 0
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | pid: 384471
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | pgrp: 384471
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | corecount: 8
[2026-03-29 17:34:40] 2026-03-29 21:33:59,540 | INFO     | event service: False
[2026-03-29 17:34:40] 2026-03-29 21:33:59,541 | INFO     | sizes: {0: 2279090, 1: 2279775, 2: 2280236, 13: 2280236, 14446: 2311171, 14447: 2311170, 14452: 2320352, 14455: 2320408, 14456: 2320602}
[2026-03-29 17:34:40] 2026-03-29 21:33:59,541 | INFO     | --------------------------------------------------
[2026-03-29 17:34:40] 2026-03-29 21:33:59,541 | INFO     | 
[2026-03-29 17:34:40] 2026-03-29 21:33:59,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,591 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 17:34:40] 2026-03-29 21:33:59,591 | INFO     | job 7069365445 has completed (purged errors)
[2026-03-29 17:34:40] 2026-03-29 21:33:59,591 | INFO     | overall cleanup function is called
[2026-03-29 17:34:40] 2026-03-29 21:34:00,616 | INFO     | --- collectZombieJob: --- 10, [384471]
[2026-03-29 17:34:40] 2026-03-29 21:34:00,616 | INFO     | zombie collector waiting for pid 384471
[2026-03-29 17:34:40] 2026-03-29 21:34:00,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 17:34:40] 2026-03-29 21:34:00,617 | INFO     | collected zombie processes
[2026-03-29 17:34:40] 2026-03-29 21:34:00,617 | INFO     | will attempt to kill all subprocesses of pid=384471
[2026-03-29 17:34:40] 2026-03-29 21:34:03,273 | INFO     | PID=377101 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 17:34:40] 2026-03-29 21:34:03,273 | INFO     | .. there are 21 such processes running
[2026-03-29 17:34:40] 2026-03-29 21:34:03,323 | INFO     | process IDs to be killed: [384471] (in reverse order)
[2026-03-29 17:34:40] 2026-03-29 21:34:03,740 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 17:34:40] 2026-03-29 21:34:03,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 17:34:40] 2026-03-29 21:34:03,777 | INFO     | did not find any defunct processes belonging to 384471
[2026-03-29 17:34:40] 2026-03-29 21:34:03,810 | INFO     | did not find any defunct processes belonging to 384471
[2026-03-29 17:34:40] 2026-03-29 21:34:03,810 | INFO     | ready for new job
[2026-03-29 17:34:40] 2026-03-29 21:34:03,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 17:34:40] 2026-03-29 21:34:03,812 | INFO     | **************************************
[2026-03-29 17:34:40] 2026-03-29 21:34:03,812 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 17:34:40] 2026-03-29 21:34:03,812 | INFO     | **************************************
[2026-03-29 17:34:40] 2026-03-29 21:34:03,812 | INFO     | 
[2026-03-29 17:34:40] 2026-03-29 21:34:03,826 | INFO     | architecture information:
[2026-03-29 17:34:40] 2026-03-29 21:34:03,830 | INFO     | executing command: cat /etc/os-release
[2026-03-29 17:34:40] 2026-03-29 21:34:03,879 | INFO     | cat /etc/os-release:
[2026-03-29 17:34:40] NAME="CentOS Linux"
[2026-03-29 17:34:40] VERSION="7 (Core)"
[2026-03-29 17:34:40] ID="centos"
[2026-03-29 17:34:40] ID_LIKE="rhel fedora"
[2026-03-29 17:34:40] VERSION_ID="7"
[2026-03-29 17:34:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 17:34:40] ANSI_COLOR="0;31"
[2026-03-29 17:34:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 17:34:40] HOME_URL="https://www.centos.org/"
[2026-03-29 17:34:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 17:34:40] 
[2026-03-29 17:34:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 17:34:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 17:34:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 17:34:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 17:34:40] 
[2026-03-29 17:34:40] 2026-03-29 21:34:03,880 | INFO     | **************************************
[2026-03-29 17:34:40] 2026-03-29 21:34:04,383 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-03-29 17:34:40] 2026-03-29 21:34:04,460 | INFO     | sufficient remaining disk space (93550804992 B)
[2026-03-29 17:34:40] 2026-03-29 21:34:04,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 17:34:40] 2026-03-29 21:34:04,461 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 17:34:40] 2026-03-29 21:34:04,461 | INFO     | update_server=False
[2026-03-29 17:34:40] 2026-03-29 21:34:04,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 17:34:40] 2026-03-29 21:34:04,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 17:34:40] 2026-03-29 21:34:04,462 | INFO     | aborting loop
[2026-03-29 17:34:40] 2026-03-29 21:34:04,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 17:34:40] 2026-03-29 21:34:04,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 17:34:40] 2026-03-29 21:34:04,810 | INFO     | all data control threads have been joined
[2026-03-29 17:34:40] 2026-03-29 21:34:04,934 | INFO     | all payload control threads have been joined
[2026-03-29 17:34:40] 2026-03-29 21:34:05,467 | INFO     | [job] retrieve thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,468 | INFO     | [job] job monitor thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 17:34:40] 2026-03-29 21:34:05,513 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,516 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,594 | INFO     | [job] queue monitor thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,795 | INFO     | [payload] validate_post thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,817 | INFO     | [data] control thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:05,873 | INFO     | all job control threads have been joined
[2026-03-29 17:34:40] 2026-03-29 21:34:05,942 | INFO     | [payload] control thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:06,054 | INFO     | [job] validate thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:06,256 | INFO     | [payload] failed_post thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:06,505 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:06,605 | INFO     | [data] copytool_in thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:06,879 | INFO     | [job] control thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:07,506 | INFO     | [data] copytool_out thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:08,475 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:14,797 | INFO     | [monitor] cgroup control has ended
[2026-03-29 17:34:40] 2026-03-29 21:34:15,215 | INFO     | job.realtimelogging is not enabled
[2026-03-29 17:34:40] 2026-03-29 21:34:16,223 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 17:34:40] 2026-03-29 21:34:16,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920853964608)>', '<ExcThread(monitor, started 139920228214528)>']
[2026-03-29 17:34:40] 2026-03-29 21:34:21,715 | INFO     | all workflow threads have been joined
[2026-03-29 17:34:40] 2026-03-29 21:34:21,716 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 17:34:40] 2026-03-29 21:34:21,716 | INFO     | traces error code: 0
[2026-03-29 17:34:40] 2026-03-29 21:34:21,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 17:34:40] 2026-03-29 21:34:38,581 | INFO     | PID=377101 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | INFO     | .. there are 21 such processes running
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 17:34:40] 2026-03-29 21:34:38,582 | INFO     | [monitor] control thread has ended
[2026-03-29 17:34:40] 2026-03-29 21:34:39,343 [wrapper] ==== pilot stdout END ====
[2026-03-29 17:34:40] 2026-03-29 21:34:39,358 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 17:34:40] 2026-03-29 21:34:39,373 [wrapper] pilotpid: 377101
[2026-03-29 17:34:40] 2026-03-29 21:34:39,395 [wrapper] Pilot exit status: 0
[2026-03-29 17:34:40] 2026-03-29 21:34:39,485 [wrapper] pandaids: 7069365445
[2026-03-29 17:34:40] 2026-03-29 21:34:39,673 [wrapper] cleanup supervisor_pilot 1092727 377102
[2026-03-29 17:34:40] 2026-03-29 21:34:39,695 [wrapper] Test setup, not cleaning
[2026-03-29 17:34:40] 2026-03-29 21:34:39,722 [wrapper] apfmon messages muted
[2026-03-29 17:34:40] 2026-03-29 21:34:39,746 [wrapper] ==== wrapper stdout END ====
[2026-03-29 17:34:40] 2026-03-29 21:34:39,769 [wrapper] ==== wrapper stderr END ====
[2026-03-29 17:34:40]  *** Error codes and diagnostics ***
[2026-03-29 17:34:40]     "exeErrorCode": 0,
[2026-03-29 17:34:40]     "exeErrorDiag": "",
[2026-03-29 17:34:40]     "pilotErrorCode": 0,
[2026-03-29 17:34:40]     "pilotErrorDiag": "",
[2026-03-29 17:34:40]  *** Listing of results directory ***
[2026-03-29 17:34:40] total 425368
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas    585013 Mar 28 13:13 pilot3.tar.gz
[2026-03-29 17:34:40] -rwx------. 1 boincer umatlas     36322 Mar 28 13:16 runpilot2-wrapper.sh
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas      5118 Mar 28 13:18 queuedata.json
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas       100 Mar 29 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 17:34:40] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 29 13:31 run_atlas
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas       105 Mar 29 13:31 job.xml
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas 217640226 Mar 29 13:31 EVNT.48967092._000533.pool.root.1
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas    597542 Mar 29 13:31 input.tar.gz
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 13:31 start_atlas.sh
[2026-03-29 17:34:40] drwxrwx--x. 2 boincer umatlas      4096 Mar 29 13:31 shared
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas         0 Mar 29 13:31 boinc_lockfile
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas      2601 Mar 29 13:31 pandaJob.out
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas        57 Mar 29 13:31 setup.sh.local
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas   1003389 Mar 29 13:32 agis_schedconf.cvmfs.json
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas       444 Mar 29 13:32 workernode_map.json
[2026-03-29 17:34:40] drwx------. 5 boincer umatlas      4096 Mar 29 13:32 pilot3
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas      6880 Mar 29 17:31 init_data.xml
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas 209352310 Mar 29 17:32 HITS.48967094._017016.pool.root.1
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas       530 Mar 29 17:32 boinc_task_state.xml
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas      1056 Mar 29 17:33 memory_monitor_summary.json
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas   1511579 Mar 29 17:33 agis_ddmendpoints.agis.ALL.json
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas    460104 Mar 29 17:33 log.48967094._017016.job.log.tgz.1
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas        95 Mar 29 17:33 pilot_heartbeat.json
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas      6419 Mar 29 17:33 heartbeat.json
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas       822 Mar 29 17:34 pilotlog.txt
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas      8192 Mar 29 17:34 boinc_mmap_file
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas        28 Mar 29 17:34 wrapper_checkpoint.txt
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas   1862584 Mar 29 17:34 log.48967094._017016.job.log.1
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas       357 Mar 29 17:34 output.list
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas       620 Mar 29 17:34 runtime_log
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas   2344960 Mar 29 17:34 result.tar.gz
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas       662 Mar 29 17:34 UJILDmKSmQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmWWIKDm05hzHm.diag
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas      9352 Mar 29 17:34 runtime_log.err
[2026-03-29 17:34:40] -rw-r--r--. 1 boincer umatlas     21423 Mar 29 17:34 stderr.txt
[2026-03-29 17:34:40] HITS file was successfully produced:
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas 209352310 Mar 29 17:32 shared/HITS.pool.root.1
[2026-03-29 17:34:40]  *** Contents of shared directory: ***
[2026-03-29 17:34:40] total 419888
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas 217640226 Mar 29 13:31 ATLAS.root_0
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas    597542 Mar 29 13:31 input.tar.gz
[2026-03-29 17:34:40] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 13:31 start_atlas.sh
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas 209352310 Mar 29 17:32 HITS.pool.root.1
[2026-03-29 17:34:40] -rw-------. 1 boincer umatlas   2344960 Mar 29 17:34 result.tar.gz
17:34:41 (372482): run_atlas exited; CPU time 51479.893363
17:34:41 (372482): called boinc_finish(0)

</stderr_txt>
]]>

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