Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:16:53 (978543): wrapper (7.7.26015): starting
12:16:53 (978543): wrapper: running run_atlas (--nthreads 9)
[2026-03-29 12:16:53] Arguments: --nthreads 9
[2026-03-29 12:16:53] Threads: 9
[2026-03-29 12:16:53] Checking for CVMFS
[2026-03-29 12:16:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 12:16:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 12:16:54] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 12:16:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 12:16:54] 2.13.3.0 7345 136869 260708 157848 0 290 22643875 40960000 21629 16776704 0 468591822 99.643 476709714 35116 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-29 12:16:54] CVMFS is ok
[2026-03-29 12:16:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 12:16:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 12:16:54] Further information can be found at the LHC@home message board.
[2026-03-29 12:16:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 12:16:54] Checking for apptainer binary...
[2026-03-29 12:16:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 12:16:54] Running /usr/bin/apptainer --version
[2026-03-29 12:16:54] apptainer version 1.4.5-2.el9
[2026-03-29 12:16:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 12:16:54] c-212-14.aglt2.org
[2026-03-29 12:16:54] apptainer works
[2026-03-29 12:16:54] Set ATHENA_PROC_NUMBER=9
[2026-03-29 12:16:54] Set ATHENA_CORE_NUMBER=9
[2026-03-29 12:16:55] Starting ATLAS job with PandaID=7066870639
[2026-03-29 12:16:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 13:40:08]  *** The last 200 lines of the pilot log: ***
[2026-03-29 13:40:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/f0/log.49263208._001780.job.log.tgz.1
[2026-03-29 13:40:08]  workdir=None
[2026-03-29 13:40:08] ]
[2026-03-29 13:40:08] 2026-03-29 17:39:31,102 | INFO     | transferring file log.49263208._001780.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/log.49263208._001780.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-29 13:40:08] 2026-03-29 17:39:31,103 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/log.49263208._001780.job.log.tgz.1 /tmp/boinchome/slots/0/log.49263208._001780.job
[2026-03-29 13:40:08] 2026-03-29 17:39:31,153 | INFO     | adding to output.list: log.49263208._001780.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/f0/log.49263208._001780.job.log.tg
[2026-03-29 13:40:08] 2026-03-29 17:39:31,155 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-29 13:40:08] 2026-03-29 17:39:31,156 | INFO     | summary of transferred files:
[2026-03-29 13:40:08] 2026-03-29 17:39:31,156 | INFO     |  -- lfn=log.49263208._001780.job.log.tgz.1, status_code=0, status=transferred
[2026-03-29 13:40:08] 2026-03-29 17:39:31,156 | INFO     | stage-out finished correctly
[2026-03-29 13:40:08] 2026-03-29 17:39:32,079 | INFO     | time since job start (4909s) is within the limit (345600.0s)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,470 | WARNING  | process 1002237 can no longer be monitored (due to stat problems) - aborting
[2026-03-29 13:40:08] 2026-03-29 17:39:33,470 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,471 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,471 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-29 13:40:08] 2026-03-29 17:39:33,471 | WARNING  | maxPSS not found in memory monitor output
[2026-03-29 13:40:08] 2026-03-29 17:39:33,472 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3205055 B
[2026-03-29 13:40:08] 2026-03-29 17:39:33,472 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15833 B
[2026-03-29 13:40:08] 2026-03-29 17:39:33,472 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-29 13:40:08] 2026-03-29 17:39:33,493 | INFO     | sufficient remaining disk space (127172345856 B)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,493 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,494 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-7066870639: 3506375 B (within 5033164800 B limit)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,495 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-7066870639/HITS.49263208._001780.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,495 | INFO     | total size of present files: 0 B (workdir size: 3506375 B)
[2026-03-29 13:40:08] 2026-03-29 17:39:33,495 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/HITS.49263208._001780.pool.root.1 since it does not exist
[2026-03-29 13:40:08] 2026-03-29 17:39:33,922 | INFO     | number of running child processes to parent process 1002237: 1
[2026-03-29 13:40:08] 2026-03-29 17:39:33,922 | INFO     | maximum number of monitored processes: 6
[2026-03-29 13:40:08] 2026-03-29 17:39:34,087 | INFO     | time since job start (4911s) is within the limit (345600.0s)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,227 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-29 13:40:08] 2026-03-29 17:39:34,335 | INFO     | job 7066870639 has state=finished
[2026-03-29 13:40:08] 2026-03-29 17:39:34,335 | INFO     | preparing for final server update for job 7066870639 in state='finished'
[2026-03-29 13:40:08] 2026-03-29 17:39:34,422 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,422 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/jobReport.json
[2026-03-29 13:40:08] 2026-03-29 17:39:34,424 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-29 13:40:08] 2026-03-29 17:39:34,424 | INFO     | this job has now completed (state=finished)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,424 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,424 | INFO     | log transfer has been attempted: DONE
[2026-03-29 13:40:08] 2026-03-29 17:39:34,424 | INFO     | job 7066870639 has finished - writing final server update
[2026-03-29 13:40:08] 2026-03-29 17:39:34,425 | INFO     | total number of processed events: 400 (read)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,439 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7066870639/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,440 | INFO     | extracted standard info from prmon json
[2026-03-29 13:40:08] 2026-03-29 17:39:34,440 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 13:40:08] 2026-03-29 17:39:34,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 13:40:08] 2026-03-29 17:39:34,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 13:40:08] 2026-03-29 17:39:34,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 13:40:08] 2026-03-29 17:39:34,442 | INFO     | fitting pss+swap vs Time
[2026-03-29 13:40:08] 2026-03-29 17:39:34,442 | INFO     | sum of square deviations: 120572372.05479456
[2026-03-29 13:40:08] 2026-03-29 17:39:34,443 | INFO     | sum of deviations: -12045336349.9863
[2026-03-29 13:40:08] 2026-03-29 17:39:34,443 | INFO     | mean x: 1774803608.260274
[2026-03-29 13:40:08] 2026-03-29 17:39:34,443 | INFO     | mean y: 2759488.315068493
[2026-03-29 13:40:08] 2026-03-29 17:39:34,443 | INFO     | intersect: 177307941864.16614
[2026-03-29 13:40:08] 2026-03-29 17:39:34,443 | INFO     | chi2: 0.05537429753054991
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | current memory leak: -99.90 B/s (using 73 data points, chi2=0.06)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | could have reported an average CPU frequency of 3269 MHz (6 samples)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | ..............................
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . Timing measurements:
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . get job = 0 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . initial setup = 24 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . payload setup = 33 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . stage-in = 0 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . payload execution = 4867 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,444 | INFO     | . stage-out = 0 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,445 | INFO     | . log creation = 0 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,445 | INFO     | ..............................
[2026-03-29 13:40:08] 2026-03-29 17:39:34,796 | INFO     | 
[2026-03-29 13:40:08] 2026-03-29 17:39:34,796 | INFO     | job summary report
[2026-03-29 13:40:08] 2026-03-29 17:39:34,796 | INFO     | --------------------------------------------------
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | PanDA job id: 7066870639
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | task id: 49263208
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | errors: (none)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | pilot state: finished 
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | transexitcode: 0
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | exeerrorcode: 0
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | exeerrordiag: 
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | exitcode: 0
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | exitmsg: OK
[2026-03-29 13:40:08] 2026-03-29 17:39:34,797 | INFO     | cpuconsumptiontime: 31711 s
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | nevents: 400
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | neventsw: 0
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | pid: 1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | pgrp: 1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | corecount: 9
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | event service: False
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | sizes: {0: 2279813, 1: 2280274, 2: 2280274, 4903: 2306655, 4905: 2315653, 4909: 2316059}
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | --------------------------------------------------
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | 
[2026-03-29 13:40:08] 2026-03-29 17:39:34,798 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-29 13:40:08] 2026-03-29 17:39:34,830 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,831 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,833 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,833 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 13:40:08] 2026-03-29 17:39:34,833 | INFO     | job 7066870639 has completed (purged errors)
[2026-03-29 13:40:08] 2026-03-29 17:39:34,833 | INFO     | overall cleanup function is called
[2026-03-29 13:40:08] 2026-03-29 17:39:35,841 | INFO     | --- collectZombieJob: --- 10, [1002237]
[2026-03-29 13:40:08] 2026-03-29 17:39:35,842 | INFO     | zombie collector waiting for pid 1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:35,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 13:40:08] 2026-03-29 17:39:35,842 | INFO     | collected zombie processes
[2026-03-29 13:40:08] 2026-03-29 17:39:35,842 | INFO     | will attempt to kill all subprocesses of pid=1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:36,312 | INFO     | process IDs to be killed: [1002237] (in reverse order)
[2026-03-29 13:40:08] 2026-03-29 17:39:36,491 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 13:40:08] 2026-03-29 17:39:36,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 13:40:08] 2026-03-29 17:39:36,511 | INFO     | did not find any defunct processes belonging to 1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:36,530 | INFO     | did not find any defunct processes belonging to 1002237
[2026-03-29 13:40:08] 2026-03-29 17:39:36,530 | INFO     | ready for new job
[2026-03-29 13:40:08] 2026-03-29 17:39:36,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 13:40:08] 2026-03-29 17:39:36,532 | INFO     | **************************************
[2026-03-29 13:40:08] 2026-03-29 17:39:36,532 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 13:40:08] 2026-03-29 17:39:36,532 | INFO     | **************************************
[2026-03-29 13:40:08] 2026-03-29 17:39:36,532 | INFO     | 
[2026-03-29 13:40:08] 2026-03-29 17:39:36,537 | INFO     | architecture information:
[2026-03-29 13:40:08] 2026-03-29 17:39:36,537 | INFO     | executing command: cat /etc/os-release
[2026-03-29 13:40:08] 2026-03-29 17:39:36,556 | INFO     | cat /etc/os-release:
[2026-03-29 13:40:08] NAME="CentOS Linux"
[2026-03-29 13:40:08] VERSION="7 (Core)"
[2026-03-29 13:40:08] ID="centos"
[2026-03-29 13:40:08] ID_LIKE="rhel fedora"
[2026-03-29 13:40:08] VERSION_ID="7"
[2026-03-29 13:40:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 13:40:08] ANSI_COLOR="0;31"
[2026-03-29 13:40:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 13:40:08] HOME_URL="https://www.centos.org/"
[2026-03-29 13:40:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 13:40:08] 
[2026-03-29 13:40:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 13:40:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 13:40:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 13:40:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 13:40:08] 
[2026-03-29 13:40:08] 2026-03-29 17:39:36,556 | INFO     | **************************************
[2026-03-29 13:40:08] 2026-03-29 17:39:37,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-29 13:40:08] 2026-03-29 17:39:37,076 | INFO     | sufficient remaining disk space (127176540160 B)
[2026-03-29 13:40:08] 2026-03-29 17:39:37,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 13:40:08] 2026-03-29 17:39:37,076 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 13:40:08] 2026-03-29 17:39:37,076 | INFO     | update_server=False
[2026-03-29 13:40:08] 2026-03-29 17:39:37,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 13:40:08] 2026-03-29 17:39:37,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 13:40:08] 2026-03-29 17:39:37,421 | INFO     | all job control threads have been joined
[2026-03-29 13:40:08] 2026-03-29 17:39:37,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 13:40:08] 2026-03-29 17:39:37,442 | INFO     | aborting loop
[2026-03-29 13:40:08] 2026-03-29 17:39:37,713 | INFO     | all data control threads have been joined
[2026-03-29 13:40:08] 2026-03-29 17:39:38,081 | INFO     | [job] retrieve thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,248 | INFO     | [data] copytool_in thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,321 | INFO     | [payload] validate_post thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,427 | INFO     | [job] control thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,452 | INFO     | [job] job monitor thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,509 | INFO     | all payload control threads have been joined
[2026-03-29 13:40:08] 2026-03-29 17:39:38,719 | INFO     | [data] control thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:38,764 | INFO     | [payload] failed_post thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,063 | INFO     | [job] validate thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,082 | INFO     | [data] copytool_out thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,113 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,155 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,208 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,515 | INFO     | [payload] control thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:39,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 13:40:08] 2026-03-29 17:39:40,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 13:40:08] 2026-03-29 17:39:40,567 | INFO     | [job] queue monitor thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:44,369 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:47,636 | INFO     | job.realtimelogging is not enabled
[2026-03-29 13:40:08] 2026-03-29 17:39:48,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 13:40:08] 2026-03-29 17:39:51,431 | INFO     | [monitor] cgroup control has ended
[2026-03-29 13:40:08] 2026-03-29 17:39:52,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497951033152)>', '<ExcThread(monitor, started 140497607702272)>']
[2026-03-29 13:40:08] 2026-03-29 17:39:57,907 | INFO     | all workflow threads have been joined
[2026-03-29 13:40:08] 2026-03-29 17:39:57,908 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 13:40:08] 2026-03-29 17:39:57,908 | INFO     | traces error code: 0
[2026-03-29 13:40:08] 2026-03-29 17:39:57,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 13:40:08] 2026-03-29 17:40:07,916 | INFO     | PID=985885 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-29 13:40:08] 2026-03-29 17:40:07,916 | INFO     | .. there are 22 such processes running
[2026-03-29 13:40:08] 2026-03-29 17:40:07,919 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 13:40:08] 2026-03-29 17:40:07,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 13:40:08] 2026-03-29 17:40:07,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 13:40:08] 2026-03-29 17:40:07,920 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 13:40:08] 2026-03-29 17:40:07,920 | INFO     | [monitor] control thread has ended
[2026-03-29 13:40:08] 2026-03-29 17:40:08,143 [wrapper] ==== pilot stdout END ====
[2026-03-29 13:40:08] 2026-03-29 17:40:08,154 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 13:40:08] 2026-03-29 17:40:08,157 [wrapper] pilotpid: 985885
[2026-03-29 13:40:08] 2026-03-29 17:40:08,192 [wrapper] Pilot exit status: 0
[2026-03-29 13:40:08] 2026-03-29 17:40:08,223 [wrapper] pandaids: 7066870639
[2026-03-29 13:40:08] 2026-03-29 17:40:08,417 [wrapper] cleanup supervisor_pilot 1608070 985886
[2026-03-29 13:40:08] 2026-03-29 17:40:08,422 [wrapper] Test setup, not cleaning
[2026-03-29 13:40:08] 2026-03-29 17:40:08,458 [wrapper] apfmon messages muted
[2026-03-29 13:40:08] 2026-03-29 17:40:08,464 [wrapper] ==== wrapper stdout END ====
[2026-03-29 13:40:08] 2026-03-29 17:40:08,468 [wrapper] ==== wrapper stderr END ====
[2026-03-29 13:40:08]  *** Error codes and diagnostics ***
[2026-03-29 13:40:08]     "exeErrorCode": 0,
[2026-03-29 13:40:08]     "exeErrorDiag": "",
[2026-03-29 13:40:08]     "pilotErrorCode": 0,
[2026-03-29 13:40:08]     "pilotErrorDiag": "",
[2026-03-29 13:40:08]  *** Listing of results directory ***
[2026-03-29 13:40:08] total 418852
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas    585013 Mar 29 07:16 pilot3.tar.gz
[2026-03-29 13:40:08] -rwx------. 1 boincer umatlas     36322 Mar 29 07:18 runpilot2-wrapper.sh
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas      5118 Mar 29 07:19 queuedata.json
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas       100 Mar 29 12:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 13:40:08] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 29 12:16 run_atlas
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas       105 Mar 29 12:16 job.xml
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas 224277482 Mar 29 12:16 EVNT.49263206._000054.pool.root.1
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 12:16 start_atlas.sh
[2026-03-29 13:40:08] drwxrwx--x. 2 boincer umatlas      4096 Mar 29 12:16 shared
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas    597532 Mar 29 12:16 input.tar.gz
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas         0 Mar 29 12:16 boinc_lockfile
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas      2572 Mar 29 12:16 pandaJob.out
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas        57 Mar 29 12:16 setup.sh.local
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas   1003389 Mar 29 12:17 agis_schedconf.cvmfs.json
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas   1511579 Mar 29 12:17 agis_ddmendpoints.agis.ALL.json
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas       430 Mar 29 12:17 workernode_map.json
[2026-03-29 13:40:08] drwx------. 5 boincer umatlas      4096 Mar 29 12:17 pilot3
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas      6959 Mar 29 13:38 init_data.xml
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas 198621190 Mar 29 13:38 HITS.49263208._001780.pool.root.1
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas       529 Mar 29 13:38 boinc_task_state.xml
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas      1042 Mar 29 13:39 memory_monitor_summary.json
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas    333763 Mar 29 13:39 log.49263208._001780.job.log.tgz.1
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas      6348 Mar 29 13:39 heartbeat.json
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas        27 Mar 29 13:40 wrapper_checkpoint.txt
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas      8192 Mar 29 13:40 boinc_mmap_file
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas        95 Mar 29 13:40 pilot_heartbeat.json
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas       822 Mar 29 13:40 pilotlog.txt
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas    700339 Mar 29 13:40 log.49263208._001780.job.log.1
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas       357 Mar 29 13:40 output.list
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas       620 Mar 29 13:40 runtime_log
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas   1054720 Mar 29 13:40 result.tar.gz
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas       658 Mar 29 13:40 WGYLDmtK3Q9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmwMKKDmMjo51m.diag
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas      9341 Mar 29 13:40 runtime_log.err
[2026-03-29 13:40:08] -rw-r--r--. 1 boincer umatlas     22339 Mar 29 13:40 stderr.txt
[2026-03-29 13:40:08] HITS file was successfully produced:
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas 198621190 Mar 29 13:38 shared/HITS.pool.root.1
[2026-03-29 13:40:08]  *** Contents of shared directory: ***
[2026-03-29 13:40:08] total 414632
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas 224277482 Mar 29 12:16 ATLAS.root_0
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 12:16 start_atlas.sh
[2026-03-29 13:40:08] -rw-r--r--. 2 boincer umatlas    597532 Mar 29 12:16 input.tar.gz
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas 198621190 Mar 29 13:38 HITS.pool.root.1
[2026-03-29 13:40:08] -rw-------. 1 boincer umatlas   1054720 Mar 29 13:40 result.tar.gz
13:40:10 (978543): run_atlas exited; CPU time 31838.497927
13:40:10 (978543): called boinc_finish(0)

</stderr_txt>
]]>

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