Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:38:37 (1957470): wrapper (7.7.26015): starting
08:38:37 (1957470): wrapper: running run_atlas (--nthreads 4)
[2026-03-30 08:38:37] Arguments: --nthreads 4
[2026-03-30 08:38:37] Threads: 4
[2026-03-30 08:38:37] Checking for CVMFS
[2026-03-30 08:38:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 08:38:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 08:38:37] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 08:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 08:38:37] 2.9.2.0 1501249 3231 88200 157871 3 50 32226782 36864000 0 130560 0 1552645 99.985 119172 20281 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 08:38:37] CVMFS is ok
[2026-03-30 08:38:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 08:38:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 08:38:37] Further information can be found at the LHC@home message board.
[2026-03-30 08:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 08:38:37] Checking for apptainer binary...
[2026-03-30 08:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 08:38:37] Running /usr/bin/apptainer --version
[2026-03-30 08:38:37] apptainer version 1.4.1-1.1
[2026-03-30 08:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 08:38:37] thA314
[2026-03-30 08:38:37] apptainer works
[2026-03-30 08:38:37] Set ATHENA_PROC_NUMBER=4
[2026-03-30 08:38:37] Set ATHENA_CORE_NUMBER=4
[2026-03-30 08:38:37] Starting ATLAS job with PandaID=7073427179
[2026-03-30 08:38:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 10:44:07]  *** The last 200 lines of the pilot log: ***
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | job 7073427179 has completed (purged errors)
[2026-03-30 10:44:07] 2026-03-30 08:43:11,824 | INFO     | overall cleanup function is called
[2026-03-30 10:44:07] 2026-03-30 08:43:12,831 | INFO     | --- collectZombieJob: --- 10, [1966098]
[2026-03-30 10:44:07] 2026-03-30 08:43:12,831 | INFO     | zombie collector waiting for pid 1966098
[2026-03-30 10:44:07] 2026-03-30 08:43:12,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 10:44:07] 2026-03-30 08:43:12,831 | INFO     | collected zombie processes
[2026-03-30 10:44:07] 2026-03-30 08:43:12,831 | INFO     | will attempt to kill all subprocesses of pid=1966098
[2026-03-30 10:44:07] 2026-03-30 08:43:12,881 | INFO     | process IDs to be killed: [1966098] (in reverse order)
[2026-03-30 10:44:07] 2026-03-30 08:43:12,917 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 10:44:07] 2026-03-30 08:43:12,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 10:44:07] 2026-03-30 08:43:12,919 | INFO     | did not find any defunct processes belonging to 1966098
[2026-03-30 10:44:07] 2026-03-30 08:43:12,920 | INFO     | did not find any defunct processes belonging to 1966098
[2026-03-30 10:44:07] 2026-03-30 08:43:12,920 | INFO     | ready for new job
[2026-03-30 10:44:07] 2026-03-30 08:43:12,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 10:44:07] 2026-03-30 08:43:12,921 | INFO     | **************************************
[2026-03-30 10:44:07] 2026-03-30 08:43:12,921 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 10:44:07] 2026-03-30 08:43:12,921 | INFO     | **************************************
[2026-03-30 10:44:07] 2026-03-30 08:43:12,921 | INFO     | 
[2026-03-30 10:44:07] 2026-03-30 08:43:12,922 | INFO     | architecture information:
[2026-03-30 10:44:07] 2026-03-30 08:43:12,922 | INFO     | executing command: cat /etc/os-release
[2026-03-30 10:44:07] 2026-03-30 08:43:12,936 | INFO     | cat /etc/os-release:
[2026-03-30 10:44:07] NAME="CentOS Linux"
[2026-03-30 10:44:07] VERSION="7 (Core)"
[2026-03-30 10:44:07] ID="centos"
[2026-03-30 10:44:07] ID_LIKE="rhel fedora"
[2026-03-30 10:44:07] VERSION_ID="7"
[2026-03-30 10:44:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 10:44:07] ANSI_COLOR="0;31"
[2026-03-30 10:44:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 10:44:07] HOME_URL="https://www.centos.org/"
[2026-03-30 10:44:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 10:44:07] 
[2026-03-30 10:44:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 10:44:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 10:44:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 10:44:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 10:44:07] 
[2026-03-30 10:44:07] 2026-03-30 08:43:12,937 | INFO     | **************************************
[2026-03-30 10:44:07] 2026-03-30 08:43:13,440 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 10:44:07] 2026-03-30 08:43:13,457 | INFO     | sufficient remaining disk space (226134851584 B)
[2026-03-30 10:44:07] 2026-03-30 08:43:13,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 10:44:07] 2026-03-30 08:43:13,457 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 10:44:07] 2026-03-30 08:43:13,457 | INFO     | update_server=False
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 10:44:07] 2026-03-30 08:43:13,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 10:44:07] 2026-03-30 08:43:13,798 | INFO     | job.realtimelogging is not enabled
[2026-03-30 10:44:07] 2026-03-30 08:43:14,034 | INFO     | all data control threads have been joined
[2026-03-30 10:44:07] 2026-03-30 08:43:14,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 10:44:07] 2026-03-30 08:43:14,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 10:44:07] 2026-03-30 08:43:14,171 | INFO     | aborting loop
[2026-03-30 10:44:07] 2026-03-30 08:43:14,463 | INFO     | [job] retrieve thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,464 | INFO     | [job] queue monitor thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,464 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,547 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,591 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,804 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,929 | INFO     | [payload] validate_post thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:14,938 | INFO     | all job control threads have been joined
[2026-03-30 10:44:07] 2026-03-30 08:43:14,943 | INFO     | all payload control threads have been joined
[2026-03-30 10:44:07] 2026-03-30 08:43:14,967 | INFO     | [data] copytool_in thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:15,040 | INFO     | [data] control thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:15,177 | INFO     | [job] job monitor thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:15,888 | INFO     | [job] validate thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:15,943 | INFO     | [job] control thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:15,948 | INFO     | [payload] control thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:16,043 | INFO     | [payload] failed_post thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:16,135 | INFO     | [data] copytool_out thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:43:17,465 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 10:44:07] 2026-03-30 08:44:00,158 | INFO     | [monitor] cgroup control has ended
[2026-03-30 10:44:07] 2026-03-30 08:44:01,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673609291584)>', '<ExcThread(monitor, started 139672462288640)>']
[2026-03-30 10:44:07] 2026-03-30 08:44:02,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 10:44:07] 2026-03-30 08:44:02,707 | INFO     | [monitor] control thread has ended
[2026-03-30 10:44:07] 2026-03-30 08:44:06,848 | INFO     | all workflow threads have been joined
[2026-03-30 10:44:07] 2026-03-30 08:44:06,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 10:44:07] 2026-03-30 08:44:06,848 | INFO     | traces error code: 0
[2026-03-30 10:44:07] 2026-03-30 08:44:06,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 10:44:07] 2026-03-30 08:44:06,926 [wrapper] ==== pilot stdout END ====
[2026-03-30 10:44:07] 2026-03-30 08:44:06,931 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 10:44:07] 2026-03-30 08:44:06,935 [wrapper] pilotpid: 1961589
[2026-03-30 10:44:07] 2026-03-30 08:44:06,939 [wrapper] Pilot exit status: 0
[2026-03-30 10:44:07] 2026-03-30 08:44:06,950 [wrapper] pandaids: 7073427179
[2026-03-30 10:44:07] 2026-03-30 08:44:06,975 [wrapper] cleanup supervisor_pilot 1973325 1961590
[2026-03-30 10:44:07] 2026-03-30 08:44:06,979 [wrapper] Test setup, not cleaning
[2026-03-30 10:44:07] 2026-03-30 08:44:06,983 [wrapper] apfmon messages muted
[2026-03-30 10:44:07] 2026-03-30 08:44:06,987 [wrapper] ==== wrapper stdout END ====
[2026-03-30 10:44:07] 2026-03-30 08:44:06,991 [wrapper] ==== wrapper stderr END ====
[2026-03-30 10:44:07]  *** Error codes and diagnostics ***
[2026-03-30 10:44:07]     "exeErrorCode": 0,
[2026-03-30 10:44:07]     "exeErrorDiag": "",
[2026-03-30 10:44:07]     "pilotErrorCode": 0,
[2026-03-30 10:44:07]     "pilotErrorDiag": "",
[2026-03-30 10:44:07]  *** Listing of results directory ***
[2026-03-30 10:44:07] total 410992
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc    585013 Mar 29 16:12 pilot3.tar.gz
[2026-03-30 10:44:07] -rwx------ 1 boinc boinc     36322 Mar 29 16:15 runpilot2-wrapper.sh
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc      5118 Mar 29 16:18 queuedata.json
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc       100 Mar 30 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 10:44:07] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 08:38 run_atlas
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc       105 Mar 30 08:38 job.xml
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc 221840346 Mar 30 08:38 EVNT.49132308._000003.pool.root.1
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc    597542 Mar 30 08:38 input.tar.gz
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc     15845 Mar 30 08:38 start_atlas.sh
[2026-03-30 10:44:07] drwxrwx--x 2 boinc boinc      4096 Mar 30 08:38 shared
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc         0 Mar 30 08:38 boinc_setup_complete
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc      6376 Mar 30 08:38 init_data.xml
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc         0 Mar 30 08:38 boinc_lockfile
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc      2589 Mar 30 08:38 pandaJob.out
[2026-03-30 10:44:07] -rw------- 1 boinc boinc   1004063 Mar 30 08:38 agis_schedconf.cvmfs.json
[2026-03-30 10:44:07] -rw------- 1 boinc boinc   1511579 Mar 30 08:38 agis_ddmendpoints.agis.ALL.json
[2026-03-30 10:44:07] -rw------- 1 boinc boinc       419 Mar 30 08:38 workernode_map.json
[2026-03-30 10:44:07] drwx------ 5 boinc boinc      4096 Mar 30 08:38 pilot3
[2026-03-30 10:44:07] -rw------- 1 boinc boinc        95 Mar 30 10:42 pilot_heartbeat.json
[2026-03-30 10:44:07] -rw------- 1 boinc boinc 192343888 Mar 30 10:42 HITS.49179868._000556.pool.root.1
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc       529 Mar 30 10:43 boinc_task_state.xml
[2026-03-30 10:44:07] -rw------- 1 boinc boinc      1018 Mar 30 10:43 memory_monitor_summary.json
[2026-03-30 10:44:07] -rw------- 1 boinc boinc    300287 Mar 30 10:43 log.49179868._000556.job.log.tgz.1
[2026-03-30 10:44:07] -rw------- 1 boinc boinc      6291 Mar 30 10:43 heartbeat.json
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc        27 Mar 30 10:43 wrapper_checkpoint.txt
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc      8192 Mar 30 10:43 boinc_mmap_file
[2026-03-30 10:44:07] -rw------- 1 boinc boinc      4624 Mar 30 10:44 pilotlog.txt
[2026-03-30 10:44:07] -rw------- 1 boinc boinc   1072027 Mar 30 10:44 log.49179868._000556.job.log.1
[2026-03-30 10:44:07] -rw------- 1 boinc boinc       357 Mar 30 10:44 output.list
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc       620 Mar 30 10:44 runtime_log
[2026-03-30 10:44:07] -rw------- 1 boinc boinc   1392640 Mar 30 10:44 result.tar.gz
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc      8896 Mar 30 10:44 runtime_log.err
[2026-03-30 10:44:07] -rw------- 1 boinc boinc       658 Mar 30 10:44 mOONDmu65Q9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmZlKKDmD6WPzn.diag
[2026-03-30 10:44:07] -rw-r--r-- 1 boinc boinc     11738 Mar 30 10:44 stderr.txt
[2026-03-30 10:44:07] HITS file was successfully produced:
[2026-03-30 10:44:07] -rw------- 1 boinc boinc 192343888 Mar 30 10:42 shared/HITS.pool.root.1
[2026-03-30 10:44:07]  *** Contents of shared directory: ***
[2026-03-30 10:44:07] total 406448
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc 221840346 Mar 30 08:38 ATLAS.root_0
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc    597542 Mar 30 08:38 input.tar.gz
[2026-03-30 10:44:07] -rw-r--r-- 2 boinc boinc     15845 Mar 30 08:38 start_atlas.sh
[2026-03-30 10:44:07] -rw------- 1 boinc boinc 192343888 Mar 30 10:42 HITS.pool.root.1
[2026-03-30 10:44:07] -rw------- 1 boinc boinc   1392640 Mar 30 10:44 result.tar.gz
10:44:08 (1957470): run_atlas exited; CPU time 28371.910270
10:44:08 (1957470): called boinc_finish(0)

</stderr_txt>
]]>

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