Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:07 (1910377): wrapper (7.7.26015): starting
07:52:07 (1910377): wrapper: running run_atlas (--nthreads 3)
[2026-03-30 07:52:07] Arguments: --nthreads 3
[2026-03-30 07:52:07] Threads: 3
[2026-03-30 07:52:07] Checking for CVMFS
[2026-03-30 07:52:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 07:52:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 07:52:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 07:52:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 07:52:08] 2.9.2.0 1278530 5565 63928 157869 0 89 19640284 36864000 653 130560 0 2314332 99.983 217620 13696 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 07:52:08] CVMFS is ok
[2026-03-30 07:52:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 07:52:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 07:52:08] Further information can be found at the LHC@home message board.
[2026-03-30 07:52:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 07:52:08] Checking for apptainer binary...
[2026-03-30 07:52:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 07:52:08] Running /usr/bin/apptainer --version
[2026-03-30 07:52:08] apptainer version 1.4.1-1.1
[2026-03-30 07:52:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 07:52:08] thA389a
[2026-03-30 07:52:08] apptainer works
[2026-03-30 07:52:08] Set ATHENA_PROC_NUMBER=3
[2026-03-30 07:52:08] Set ATHENA_CORE_NUMBER=3
[2026-03-30 07:52:08] Starting ATLAS job with PandaID=7069724205
[2026-03-30 07:52:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 09:30:44]  *** The last 200 lines of the pilot log: ***
[2026-03-30 09:30:44] 2026-03-30 07:30:13,617 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 09:30:44] 2026-03-30 07:30:13,657 | INFO     | number of running child processes to parent process 1918853: 1
[2026-03-30 09:30:44] 2026-03-30 07:30:13,657 | INFO     | maximum number of monitored processes: 6
[2026-03-30 09:30:44] 2026-03-30 07:30:13,657 | INFO     | aborting job monitoring since job object (job id=7069724205) has expired
[2026-03-30 09:30:44] 2026-03-30 07:30:13,709 | INFO     | --- collectZombieJob: --- 10, [1918853]
[2026-03-30 09:30:44] 2026-03-30 07:30:13,709 | INFO     | zombie collector waiting for pid 1918853
[2026-03-30 09:30:44] 2026-03-30 07:30:13,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 09:30:44] 2026-03-30 07:30:13,710 | INFO     | collected zombie processes
[2026-03-30 09:30:44] 2026-03-30 07:30:13,710 | INFO     | will attempt to kill all subprocesses of pid=1918853
[2026-03-30 09:30:44] 2026-03-30 07:30:13,750 | INFO     | process IDs to be killed: [1918853] (in reverse order)
[2026-03-30 09:30:44] 2026-03-30 07:30:13,777 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 09:30:44] 2026-03-30 07:30:13,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 09:30:44] 2026-03-30 07:30:13,778 | INFO     | did not find any defunct processes belonging to 1918853
[2026-03-30 09:30:44] 2026-03-30 07:30:13,779 | INFO     | did not find any defunct processes belonging to 1918853
[2026-03-30 09:30:44] 2026-03-30 07:30:13,779 | INFO     | ready for new job
[2026-03-30 09:30:44] 2026-03-30 07:30:13,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 09:30:44] 2026-03-30 07:30:13,780 | INFO     | **************************************
[2026-03-30 09:30:44] 2026-03-30 07:30:13,780 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 09:30:44] 2026-03-30 07:30:13,780 | INFO     | **************************************
[2026-03-30 09:30:44] 2026-03-30 07:30:13,780 | INFO     | 
[2026-03-30 09:30:44] 2026-03-30 07:30:13,780 | INFO     | architecture information:
[2026-03-30 09:30:44] 2026-03-30 07:30:13,781 | INFO     | executing command: cat /etc/os-release
[2026-03-30 09:30:44] 2026-03-30 07:30:13,791 | INFO     | cat /etc/os-release:
[2026-03-30 09:30:44] NAME="CentOS Linux"
[2026-03-30 09:30:44] VERSION="7 (Core)"
[2026-03-30 09:30:44] ID="centos"
[2026-03-30 09:30:44] ID_LIKE="rhel fedora"
[2026-03-30 09:30:44] VERSION_ID="7"
[2026-03-30 09:30:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 09:30:44] ANSI_COLOR="0;31"
[2026-03-30 09:30:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 09:30:44] HOME_URL="https://www.centos.org/"
[2026-03-30 09:30:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 09:30:44] 
[2026-03-30 09:30:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 09:30:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 09:30:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 09:30:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 09:30:44] 
[2026-03-30 09:30:44] 2026-03-30 07:30:13,791 | INFO     | **************************************
[2026-03-30 09:30:44] 2026-03-30 07:30:14,294 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 09:30:44] 2026-03-30 07:30:14,304 | INFO     | sufficient remaining disk space (76107743232 B)
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | INFO     | update_server=False
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | INFO     | will abort loop
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 09:30:44] 2026-03-30 07:30:14,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 09:30:44] 2026-03-30 07:30:14,821 | INFO     | all data control threads have been joined
[2026-03-30 09:30:44] 2026-03-30 07:30:15,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 09:30:44] 2026-03-30 07:30:15,306 | INFO     | [job] job monitor thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:15,310 | INFO     | [job] retrieve thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:15,310 | INFO     | [job] queue monitor thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:15,315 | INFO     | all job control threads have been joined
[2026-03-30 09:30:44] 2026-03-30 07:30:15,397 | INFO     | all payload control threads have been joined
[2026-03-30 09:30:44] 2026-03-30 07:30:15,826 | INFO     | [data] control thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:15,866 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,154 | INFO     | [payload] failed_post thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,184 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,193 | INFO     | [job] validate thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,321 | INFO     | [job] control thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,332 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,400 | INFO     | [payload] control thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,579 | INFO     | [data] copytool_in thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:16,732 | INFO     | [payload] validate_post thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:17,160 | INFO     | [data] copytool_out thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:18,311 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:25,200 | INFO     | job.realtimelogging is not enabled
[2026-03-30 09:30:44] 2026-03-30 07:30:26,185 | INFO     | [monitor] cgroup control has ended
[2026-03-30 09:30:44] 2026-03-30 07:30:26,205 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 09:30:44] 2026-03-30 07:30:26,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195947124544)>', '<ExcThread(monitor, started 140195665295104)>']
[2026-03-30 09:30:44] 2026-03-30 07:30:31,763 | INFO     | all workflow threads have been joined
[2026-03-30 09:30:44] 2026-03-30 07:30:31,763 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 09:30:44] 2026-03-30 07:30:31,763 | INFO     | traces error code: 0
[2026-03-30 09:30:44] 2026-03-30 07:30:31,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 09:30:44] 2026-03-30 07:30:44,490 | INFO     | PID=1914424 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 09:30:44] 2026-03-30 07:30:44,491 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 09:30:44] 2026-03-30 07:30:44,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 09:30:44] 2026-03-30 07:30:44,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 09:30:44] 2026-03-30 07:30:44,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 09:30:44] 2026-03-30 07:30:44,491 | INFO     | [monitor] control thread has ended
[2026-03-30 09:30:44] 2026-03-30 07:30:44,536 [wrapper] ==== pilot stdout END ====
[2026-03-30 09:30:44] 2026-03-30 07:30:44,539 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 09:30:44] 2026-03-30 07:30:44,542 [wrapper] pilotpid: 1914424
[2026-03-30 09:30:44] 2026-03-30 07:30:44,545 [wrapper] Pilot exit status: 0
[2026-03-30 09:30:44] 2026-03-30 07:30:44,553 [wrapper] pandaids: 7069724205
[2026-03-30 09:30:44] 2026-03-30 07:30:44,575 [wrapper] cleanup supervisor_pilot 1925657 1914425
[2026-03-30 09:30:44] 2026-03-30 07:30:44,578 [wrapper] Test setup, not cleaning
[2026-03-30 09:30:44] 2026-03-30 07:30:44,581 [wrapper] apfmon messages muted
[2026-03-30 09:30:44] 2026-03-30 07:30:44,584 [wrapper] ==== wrapper stdout END ====
[2026-03-30 09:30:44] 2026-03-30 07:30:44,586 [wrapper] ==== wrapper stderr END ====
[2026-03-30 09:30:44]  *** Error codes and diagnostics ***
[2026-03-30 09:30:44]     "exeErrorCode": 0,
[2026-03-30 09:30:44]     "exeErrorDiag": "",
[2026-03-30 09:30:44]     "pilotErrorCode": 0,
[2026-03-30 09:30:44]     "pilotErrorDiag": "",
[2026-03-30 09:30:44]  *** Listing of results directory ***
[2026-03-30 09:30:44] total 413996
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc    585013 Mar 29 16:12 pilot3.tar.gz
[2026-03-30 09:30:44] -rwx------ 1 boinc boinc     36322 Mar 29 16:13 runpilot2-wrapper.sh
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc      5118 Mar 29 16:14 queuedata.json
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc       100 Mar 30 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 09:30:44] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 07:52 run_atlas
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc       105 Mar 30 07:52 job.xml
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc 222868289 Mar 30 07:52 EVNT.49263206._000072.pool.root.1
[2026-03-30 09:30:44] drwxrwx--x 2 boinc boinc      4096 Mar 30 07:52 shared
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc    597528 Mar 30 07:52 input.tar.gz
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc     15845 Mar 30 07:52 start_atlas.sh
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc         0 Mar 30 07:52 boinc_setup_complete
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc      6196 Mar 30 07:52 init_data.xml
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc         0 Mar 30 07:52 boinc_lockfile
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc      2570 Mar 30 07:52 pandaJob.out
[2026-03-30 09:30:44] -rw------- 1 boinc boinc   1004063 Mar 30 07:52 agis_schedconf.cvmfs.json
[2026-03-30 09:30:44] -rw------- 1 boinc boinc   1511579 Mar 30 07:52 agis_ddmendpoints.agis.ALL.json
[2026-03-30 09:30:44] -rw------- 1 boinc boinc       418 Mar 30 07:52 workernode_map.json
[2026-03-30 09:30:44] drwx------ 5 boinc boinc      4096 Mar 30 07:52 pilot3
[2026-03-30 09:30:44] -rw------- 1 boinc boinc        95 Mar 30 09:29 pilot_heartbeat.json
[2026-03-30 09:30:44] -rw------- 1 boinc boinc 194926073 Mar 30 09:29 HITS.49263208._002228.pool.root.1
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc       529 Mar 30 09:29 boinc_task_state.xml
[2026-03-30 09:30:44] -rw------- 1 boinc boinc      1022 Mar 30 09:30 memory_monitor_summary.json
[2026-03-30 09:30:44] -rw------- 1 boinc boinc    254597 Mar 30 09:30 log.49263208._002228.job.log.tgz.1
[2026-03-30 09:30:44] -rw------- 1 boinc boinc      6298 Mar 30 09:30 heartbeat.json
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc      8192 Mar 30 09:30 boinc_mmap_file
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc        27 Mar 30 09:30 wrapper_checkpoint.txt
[2026-03-30 09:30:44] -rw------- 1 boinc boinc       747 Mar 30 09:30 pilotlog.txt
[2026-03-30 09:30:44] -rw------- 1 boinc boinc    851751 Mar 30 09:30 log.49263208._002228.job.log.1
[2026-03-30 09:30:44] -rw------- 1 boinc boinc       357 Mar 30 09:30 output.list
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc       620 Mar 30 09:30 runtime_log
[2026-03-30 09:30:44] -rw------- 1 boinc boinc   1126400 Mar 30 09:30 result.tar.gz
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc      8901 Mar 30 09:30 runtime_log.err
[2026-03-30 09:30:44] -rw------- 1 boinc boinc       659 Mar 30 09:30 SgELDmR45Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDm2uMKDmz8nMRn.diag
[2026-03-30 09:30:44] -rw-r--r-- 1 boinc boinc     11205 Mar 30 09:30 stderr.txt
[2026-03-30 09:30:44] HITS file was successfully produced:
[2026-03-30 09:30:44] -rw------- 1 boinc boinc 194926073 Mar 30 09:29 shared/HITS.pool.root.1
[2026-03-30 09:30:44]  *** Contents of shared directory: ***
[2026-03-30 09:30:44] total 409716
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc 222868289 Mar 30 07:52 ATLAS.root_0
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc    597528 Mar 30 07:52 input.tar.gz
[2026-03-30 09:30:44] -rw-r--r-- 2 boinc boinc     15845 Mar 30 07:52 start_atlas.sh
[2026-03-30 09:30:44] -rw------- 1 boinc boinc 194926073 Mar 30 09:29 HITS.pool.root.1
[2026-03-30 09:30:44] -rw------- 1 boinc boinc   1126400 Mar 30 09:30 result.tar.gz
09:30:46 (1910377): run_atlas exited; CPU time 16497.782013
09:30:46 (1910377): called boinc_finish(0)

</stderr_txt>
]]>

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