Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:42:47 (28522): wrapper (7.7.26015): starting
00:42:47 (28522): wrapper: running run_atlas (--nthreads 8)
[2026-03-30 00:42:47] Arguments: --nthreads 8
[2026-03-30 00:42:47] Threads: 8
[2026-03-30 00:42:47] Checking for CVMFS
[2026-03-30 00:42:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 00:42:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 00:42:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 00:42:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 00:42:49] 2.11.2.0 4857 149790 140716 157859 0 368 20303307 25165824 4638 130560 160 44976849 99.833 33396374 1085 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-30 00:42:49] CVMFS is ok
[2026-03-30 00:42:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 00:42:49] Checking for apptainer binary...
[2026-03-30 00:42:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 00:42:49] Running /usr/bin/apptainer --version
[2026-03-30 00:42:49] apptainer version 1.3.2-1.el7
[2026-03-30 00:42:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 00:42:58] cg-vwn479.simple-grid.lan
[2026-03-30 00:42:58] apptainer works
[2026-03-30 00:42:58] Set ATHENA_PROC_NUMBER=8
[2026-03-30 00:42:58] Set ATHENA_CORE_NUMBER=8
[2026-03-30 00:42:59] Starting ATLAS job with PandaID=7069699483
[2026-03-30 00:42:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 04:45:44]  *** The last 200 lines of the pilot log: ***
[2026-03-30 04:45:44] 2026-03-30 02:44:34,291 | INFO     | job 7069699483 has finished - writing final server update
[2026-03-30 04:45:44] 2026-03-30 02:44:34,292 | INFO     | total number of processed events: 400 (read)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,294 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-7069699483/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,294 | INFO     | extracted standard info from prmon json
[2026-03-30 04:45:44] 2026-03-30 02:44:34,294 | INFO     | extracted standard memory fields from prmon json
[2026-03-30 04:45:44] 2026-03-30 02:44:34,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-30 04:45:44] 2026-03-30 02:44:34,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-30 04:45:44] 2026-03-30 02:44:34,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-30 04:45:44] 2026-03-30 02:44:34,299 | INFO     | fitting pss+swap vs Time
[2026-03-30 04:45:44] 2026-03-30 02:44:34,299 | INFO     | sum of square deviations: 3675146117.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,301 | INFO     | sum of deviations: 124437192231.00002
[2026-03-30 04:45:44] 2026-03-30 02:44:34,301 | INFO     | mean x: 1774831716.5
[2026-03-30 04:45:44] 2026-03-30 02:44:34,301 | INFO     | mean y: 2402200.192982456
[2026-03-30 04:45:44] 2026-03-30 02:44:34,301 | INFO     | intersect: -60091827648.84195
[2026-03-30 04:45:44] 2026-03-30 02:44:34,302 | INFO     | chi2: 8.88930651010455
[2026-03-30 04:45:44] 2026-03-30 02:44:34,302 | INFO     | sum of square deviations: 3438620752.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,304 | INFO     | sum of deviations: 136447716715.00002
[2026-03-30 04:45:44] 2026-03-30 02:44:34,304 | INFO     | mean x: 1774831564.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,304 | INFO     | mean y: 2409771.5022421526
[2026-03-30 04:45:44] 2026-03-30 02:44:34,304 | INFO     | intersect: -70424581725.20714
[2026-03-30 04:45:44] 2026-03-30 02:44:34,305 | INFO     | chi2: 8.206601828831257
[2026-03-30 04:45:44] 2026-03-30 02:44:34,305 | INFO     | current chi2=8.206601828831257 (change=7.68006683645408 %)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,305 | INFO     | right removable region: 222
[2026-03-30 04:45:44] 2026-03-30 02:44:34,305 | INFO     | sum of square deviations: 3438620752.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,307 | INFO     | sum of deviations: 43445770750.00001
[2026-03-30 04:45:44] 2026-03-30 02:44:34,307 | INFO     | mean x: 1774831869.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,307 | INFO     | mean y: 2454401.9686098653
[2026-03-30 04:45:44] 2026-03-30 02:44:34,307 | INFO     | intersect: -22421925621.77181
[2026-03-30 04:45:44] 2026-03-30 02:44:34,308 | INFO     | chi2: 3.4706363116907033
[2026-03-30 04:45:44] 2026-03-30 02:44:34,308 | INFO     | current chi2=3.4706363116907033 (change=60.957175818545565 %)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,308 | INFO     | sum of square deviations: 3212467674.5
[2026-03-30 04:45:44] 2026-03-30 02:44:34,314 | INFO     | sum of deviations: -13848113677.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,314 | INFO     | mean x: 1774832021.5
[2026-03-30 04:45:44] 2026-03-30 02:44:34,314 | INFO     | mean y: 2492946.7155963304
[2026-03-30 04:45:44] 2026-03-30 02:44:34,314 | INFO     | intersect: 7653332762.601722
[2026-03-30 04:45:44] 2026-03-30 02:44:34,315 | INFO     | chi2: 0.9162825069788524
[2026-03-30 04:45:44] 2026-03-30 02:44:34,315 | INFO     | current chi2=0.9162825069788524 (change=73.59900534975704 %)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,315 | INFO     | sum of square deviations: 2996454322.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,317 | INFO     | sum of deviations: -19118722480.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,317 | INFO     | mean x: 1774832174.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,317 | INFO     | mean y: 2496603.0657276995
[2026-03-30 04:45:44] 2026-03-30 02:44:34,317 | INFO     | intersect: 11326721882.973423
[2026-03-30 04:45:44] 2026-03-30 02:44:34,317 | INFO     | chi2: 0.8533142522859858
[2026-03-30 04:45:44] 2026-03-30 02:44:34,318 | INFO     | current chi2=0.8533142522859858 (change=6.872144149131933 %)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,318 | INFO     | left removable region: 30
[2026-03-30 04:45:44] 2026-03-30 02:44:34,318 | INFO     | sum of square deviations: 2194675568.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,319 | INFO     | sum of deviations: 4271554829.0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,319 | INFO     | mean x: 1774832448.5
[2026-03-30 04:45:44] 2026-03-30 02:44:34,319 | INFO     | mean y: 2499874.03125
[2026-03-30 04:45:44] 2026-03-30 02:44:34,320 | INFO     | intersect: -3451903239.848983
[2026-03-30 04:45:44] 2026-03-30 02:44:34,320 | INFO     | chi2: 0.0011732741198250648
[2026-03-30 04:45:44] 2026-03-30 02:44:34,320 | INFO     | current memory leak: 1.95 B/s (using 192 data points, chi2=0.00)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | ..............................
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . Timing measurements:
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . get job = 0 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . initial setup = 101 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . payload setup = 156 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . stage-in = 0 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . payload execution = 14002 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . stage-out = 3 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | . log creation = 0 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,321 | INFO     | ..............................
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | 
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | job summary report
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | --------------------------------------------------
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | PanDA job id: 7069699483
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | task id: 49263191
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | errors: (none)
[2026-03-30 04:45:44] 2026-03-30 02:44:34,427 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | pilot state: finished 
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | transexitcode: 0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | exeerrorcode: 0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | exeerrordiag: 
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | exitcode: 0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | exitmsg: OK
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | cpuconsumptiontime: 53145 s
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | nevents: 400
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | neventsw: 0
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | pid: 4751
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | pgrp: 4751
[2026-03-30 04:45:44] 2026-03-30 02:44:34,428 | INFO     | corecount: 8
[2026-03-30 04:45:44] 2026-03-30 02:44:34,429 | INFO     | event service: False
[2026-03-30 04:45:44] 2026-03-30 02:44:34,429 | INFO     | sizes: {0: 2279107, 1: 2279793, 2: 2280254, 13: 2280254, 14162: 2310748, 14163: 2310747, 14167: 2319931, 14168: 2319987, 14171: 2320181}
[2026-03-30 04:45:44] 2026-03-30 02:44:34,429 | INFO     | --------------------------------------------------
[2026-03-30 04:45:44] 2026-03-30 02:44:34,429 | INFO     | 
[2026-03-30 04:45:44] 2026-03-30 02:44:34,429 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-03-30 04:45:44] 2026-03-30 02:44:35,030 | INFO     | time since job start (14185s) is within the limit (345600.0s)
[2026-03-30 04:45:44] 2026-03-30 02:44:35,049 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,049 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,049 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,049 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,051 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 04:45:44] 2026-03-30 02:44:35,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,051 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 04:45:44] 2026-03-30 02:44:35,051 | INFO     | job 7069699483 has completed (purged errors)
[2026-03-30 04:45:44] 2026-03-30 02:44:35,051 | INFO     | overall cleanup function is called
[2026-03-30 04:45:44] 2026-03-30 02:44:36,059 | INFO     | --- collectZombieJob: --- 10, [4751]
[2026-03-30 04:45:44] 2026-03-30 02:44:36,060 | INFO     | zombie collector waiting for pid 4751
[2026-03-30 04:45:44] 2026-03-30 02:44:36,060 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 04:45:44] 2026-03-30 02:44:36,060 | INFO     | collected zombie processes
[2026-03-30 04:45:44] 2026-03-30 02:44:36,060 | INFO     | will attempt to kill all subprocesses of pid=4751
[2026-03-30 04:45:44] 2026-03-30 02:44:36,177 | INFO     | process IDs to be killed: [4751] (in reverse order)
[2026-03-30 04:45:44] 2026-03-30 02:44:36,879 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 04:45:44] 2026-03-30 02:44:36,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 04:45:44] 2026-03-30 02:44:36,889 | INFO     | did not find any defunct processes belonging to 4751
[2026-03-30 04:45:44] 2026-03-30 02:44:36,892 | INFO     | did not find any defunct processes belonging to 4751
[2026-03-30 04:45:44] 2026-03-30 02:44:36,892 | INFO     | ready for new job
[2026-03-30 04:45:44] 2026-03-30 02:44:36,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 04:45:44] 2026-03-30 02:44:36,894 | INFO     | **************************************
[2026-03-30 04:45:44] 2026-03-30 02:44:36,895 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 04:45:44] 2026-03-30 02:44:36,895 | INFO     | **************************************
[2026-03-30 04:45:44] 2026-03-30 02:44:36,895 | INFO     | 
[2026-03-30 04:45:44] 2026-03-30 02:44:36,895 | INFO     | pilot is running in a VM
[2026-03-30 04:45:44] 2026-03-30 02:44:36,896 | INFO     | architecture information:
[2026-03-30 04:45:44] 2026-03-30 02:44:36,903 | INFO     | executing command: cat /etc/os-release
[2026-03-30 04:45:44] 2026-03-30 02:44:37,172 | INFO     | cat /etc/os-release:
[2026-03-30 04:45:44] NAME="CentOS Linux"
[2026-03-30 04:45:44] VERSION="7 (Core)"
[2026-03-30 04:45:44] ID="centos"
[2026-03-30 04:45:44] ID_LIKE="rhel fedora"
[2026-03-30 04:45:44] VERSION_ID="7"
[2026-03-30 04:45:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 04:45:44] ANSI_COLOR="0;31"
[2026-03-30 04:45:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 04:45:44] HOME_URL="https://www.centos.org/"
[2026-03-30 04:45:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 04:45:44] 
[2026-03-30 04:45:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 04:45:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 04:45:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 04:45:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 04:45:44] 
[2026-03-30 04:45:44] 2026-03-30 02:44:37,173 | INFO     | **************************************
[2026-03-30 04:45:44] 2026-03-30 02:44:37,676 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-03-30 04:45:44] 2026-03-30 02:44:37,837 | INFO     | sufficient remaining disk space (496951623680 B)
[2026-03-30 04:45:44] 2026-03-30 02:44:37,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 04:45:44] 2026-03-30 02:44:37,838 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 04:45:44] 2026-03-30 02:44:37,838 | INFO     | update_server=False
[2026-03-30 04:45:44] 2026-03-30 02:44:37,838 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 04:45:44] 2026-03-30 02:44:37,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 04:45:44] 2026-03-30 02:44:38,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 04:45:44] 2026-03-30 02:44:38,422 | INFO     | aborting loop
[2026-03-30 04:45:44] 2026-03-30 02:44:38,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 04:45:44] 2026-03-30 02:44:38,594 | INFO     | all data control threads have been joined
[2026-03-30 04:45:44] 2026-03-30 02:44:38,845 | INFO     | [job] retrieve thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:38,900 | INFO     | [data] copytool_in thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,181 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,194 | INFO     | all job control threads have been joined
[2026-03-30 04:45:44] 2026-03-30 02:44:39,275 | INFO     | all payload control threads have been joined
[2026-03-30 04:45:44] 2026-03-30 02:44:39,428 | INFO     | [job] job monitor thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 04:45:44] 2026-03-30 02:44:39,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,601 | INFO     | [data] control thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,604 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:39,901 | INFO     | [payload] failed_post thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,201 | INFO     | [job] control thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,282 | INFO     | [payload] control thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,288 | INFO     | [job] validate thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,317 | INFO     | [payload] validate_post thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,347 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,447 | INFO     | [job] queue monitor thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:40,562 | INFO     | [data] copytool_out thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:44:41,847 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 04:45:44] 2026-03-30 02:45:08,193 | INFO     | PID=32307 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-30 04:45:44] 2026-03-30 02:45:08,193 | INFO     | .. there are 9 such processes running
[2026-03-30 04:45:44] 2026-03-30 02:45:08,194 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 04:45:44] 2026-03-30 02:45:08,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 04:45:44] 2026-03-30 02:45:08,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 04:45:44] 2026-03-30 02:45:34,372 | INFO     | [monitor] cgroup control has ended
[2026-03-30 04:45:44] 2026-03-30 02:45:34,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497993131840)>', '<ExcThread(monitor, started 140497431553792)>']
[2026-03-30 04:45:44] 2026-03-30 02:45:35,354 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 04:45:44] 2026-03-30 02:45:35,355 | INFO     | [monitor] control thread has ended
[2026-03-30 04:45:44] 2026-03-30 02:45:39,652 | INFO     | all workflow threads have been joined
[2026-03-30 04:45:44] 2026-03-30 02:45:39,653 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 04:45:44] 2026-03-30 02:45:39,653 | INFO     | traces error code: 0
[2026-03-30 04:45:44] 2026-03-30 02:45:39,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 04:45:44] 2026-03-30 02:45:40,038 [wrapper] ==== pilot stdout END ====
[2026-03-30 04:45:44] 2026-03-30 02:45:40,133 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 04:45:44] 2026-03-30 02:45:40,206 [wrapper] pilotpid: 32307
[2026-03-30 04:45:44] 2026-03-30 02:45:40,287 [wrapper] Pilot exit status: 0
[2026-03-30 04:45:44] 2026-03-30 02:45:40,760 [wrapper] pandaids: 7069699483
[2026-03-30 04:45:44] 2026-03-30 02:45:41,754 [wrapper] cleanup supervisor_pilot 12560 32308
[2026-03-30 04:45:44] 2026-03-30 02:45:41,809 [wrapper] Test setup, not cleaning
[2026-03-30 04:45:44] 2026-03-30 02:45:41,901 [wrapper] apfmon messages muted
[2026-03-30 04:45:44] 2026-03-30 02:45:41,997 [wrapper] ==== wrapper stdout END ====
[2026-03-30 04:45:44] 2026-03-30 02:45:42,066 [wrapper] ==== wrapper stderr END ====
[2026-03-30 04:45:44]  *** Error codes and diagnostics ***
[2026-03-30 04:45:44]     "exeErrorCode": 0,
[2026-03-30 04:45:44]     "exeErrorDiag": "",
[2026-03-30 04:45:44]     "pilotErrorCode": 0,
[2026-03-30 04:45:44]     "pilotErrorDiag": "",
[2026-03-30 04:45:44]  *** Listing of results directory ***
[2026-03-30 04:45:44] total 411408
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc    585013 Mar 29 14:32 pilot3.tar.gz
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc      5118 Mar 29 14:32 queuedata.json
[2026-03-30 04:45:44] -rwx------. 1 boinc boinc     36322 Mar 29 14:33 runpilot2-wrapper.sh
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc       100 Mar 30 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 04:45:44] -rwxr-xr-x. 1 boinc boinc      7986 Mar 30 00:42 run_atlas
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc       105 Mar 30 00:42 job.xml
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc      6391 Mar 30 00:42 init_data.xml
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc 224530604 Mar 30 00:42 EVNT.49263189._000061.pool.root.1
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc     15845 Mar 30 00:42 start_atlas.sh
[2026-03-30 04:45:44] drwxrwx--x. 2 boinc boinc        68 Mar 30 00:42 shared
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc    597538 Mar 30 00:42 input.tar.gz
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc         0 Mar 30 00:42 boinc_lockfile
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc      2573 Mar 30 00:42 pandaJob.out
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc       415 Mar 30 00:48 workernode_map.json
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc   1004063 Mar 30 00:48 agis_schedconf.cvmfs.json
[2026-03-30 04:45:44] drwx------. 5 boinc boinc      4096 Mar 30 00:48 pilot3
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc 187947403 Mar 30 04:43 HITS.49263191._001505.pool.root.1
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc       530 Mar 30 04:43 boinc_task_state.xml
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc      1015 Mar 30 04:44 memory_monitor_summary.json
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc   1511579 Mar 30 04:44 agis_ddmendpoints.agis.ALL.json
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc    453267 Mar 30 04:44 log.49263191._001505.job.log.tgz.1
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc      6318 Mar 30 04:44 heartbeat.json
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc        95 Mar 30 04:45 pilot_heartbeat.json
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc      4881 Mar 30 04:45 pilotlog.txt
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc      8192 Mar 30 04:45 boinc_mmap_file
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc        28 Mar 30 04:45 wrapper_checkpoint.txt
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc   1989863 Mar 30 04:45 log.49263191._001505.job.log.1
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc       357 Mar 30 04:45 output.list
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc       620 Mar 30 04:45 runtime_log
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc   2457600 Mar 30 04:45 result.tar.gz
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc       655 Mar 30 04:45 ShRNDmKV4Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDmikMKDmFUgDFo.diag
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc      8832 Mar 30 04:45 runtime_log.err
[2026-03-30 04:45:44] -rw-r--r--. 1 boinc boinc     20737 Mar 30 04:45 stderr.txt
[2026-03-30 04:45:44] HITS file was successfully produced:
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc 187947403 Mar 30 04:43 shared/HITS.pool.root.1
[2026-03-30 04:45:44]  *** Contents of shared directory: ***
[2026-03-30 04:45:44] total 405816
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc 224530604 Mar 30 00:42 ATLAS.root_0
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc     15845 Mar 30 00:42 start_atlas.sh
[2026-03-30 04:45:44] -rw-r--r--. 2 boinc boinc    597538 Mar 30 00:42 input.tar.gz
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc 187947403 Mar 30 04:43 HITS.pool.root.1
[2026-03-30 04:45:44] -rw-------. 1 boinc boinc   2457600 Mar 30 04:45 result.tar.gz
04:45:45 (28522): run_atlas exited; CPU time 53358.186068
04:45:45 (28522): called boinc_finish(0)

</stderr_txt>
]]>

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