Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:47:13 (150307): wrapper (7.7.26015): starting
19:47:13 (150307): wrapper: running run_atlas (--nthreads 3)
[2026-03-29 19:47:13] Arguments: --nthreads 3
[2026-03-29 19:47:13] Threads: 3
[2026-03-29 19:47:13] Checking for CVMFS
[2026-03-29 19:47:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 19:47:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 19:47:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 19:47:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 19:47:14] 2.9.2.0 4082272 2429 73028 157850 3 50 34550121 36864000 0 130560 0 983958 99.981 97604 16114 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 19:47:14] CVMFS is ok
[2026-03-29 19:47:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 19:47:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 19:47:14] Further information can be found at the LHC@home message board.
[2026-03-29 19:47:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 19:47:14] Checking for apptainer binary...
[2026-03-29 19:47:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 19:47:14] Running /usr/bin/apptainer --version
[2026-03-29 19:47:14] apptainer version 1.4.1-1.1
[2026-03-29 19:47:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 19:47:14] thA349
[2026-03-29 19:47:14] apptainer works
[2026-03-29 19:47:14] Set ATHENA_PROC_NUMBER=3
[2026-03-29 19:47:14] Set ATHENA_CORE_NUMBER=3
[2026-03-29 19:47:14] Starting ATLAS job with PandaID=7065845380
[2026-03-29 19:47:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 21:12:58]  *** The last 200 lines of the pilot log: ***
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 21:12:58] 2026-03-29 19:12:26,494 | INFO     | job 7065845380 has completed (purged errors)
[2026-03-29 21:12:58] 2026-03-29 19:12:26,495 | INFO     | overall cleanup function is called
[2026-03-29 21:12:58] 2026-03-29 19:12:27,501 | INFO     | --- collectZombieJob: --- 10, [158792]
[2026-03-29 21:12:58] 2026-03-29 19:12:27,501 | INFO     | zombie collector waiting for pid 158792
[2026-03-29 21:12:58] 2026-03-29 19:12:27,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 21:12:58] 2026-03-29 19:12:27,501 | INFO     | collected zombie processes
[2026-03-29 21:12:58] 2026-03-29 19:12:27,501 | INFO     | will attempt to kill all subprocesses of pid=158792
[2026-03-29 21:12:58] 2026-03-29 19:12:27,543 | INFO     | process IDs to be killed: [158792] (in reverse order)
[2026-03-29 21:12:58] 2026-03-29 19:12:27,569 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 21:12:58] 2026-03-29 19:12:27,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 21:12:58] 2026-03-29 19:12:27,570 | INFO     | did not find any defunct processes belonging to 158792
[2026-03-29 21:12:58] 2026-03-29 19:12:27,571 | INFO     | did not find any defunct processes belonging to 158792
[2026-03-29 21:12:58] 2026-03-29 19:12:27,571 | INFO     | ready for new job
[2026-03-29 21:12:58] 2026-03-29 19:12:27,572 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 21:12:58] 2026-03-29 19:12:27,572 | INFO     | **************************************
[2026-03-29 21:12:58] 2026-03-29 19:12:27,572 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 21:12:58] 2026-03-29 19:12:27,572 | INFO     | **************************************
[2026-03-29 21:12:58] 2026-03-29 19:12:27,572 | INFO     | 
[2026-03-29 21:12:58] 2026-03-29 19:12:27,573 | INFO     | architecture information:
[2026-03-29 21:12:58] 2026-03-29 19:12:27,573 | INFO     | executing command: cat /etc/os-release
[2026-03-29 21:12:58] 2026-03-29 19:12:27,583 | INFO     | cat /etc/os-release:
[2026-03-29 21:12:58] NAME="CentOS Linux"
[2026-03-29 21:12:58] VERSION="7 (Core)"
[2026-03-29 21:12:58] ID="centos"
[2026-03-29 21:12:58] ID_LIKE="rhel fedora"
[2026-03-29 21:12:58] VERSION_ID="7"
[2026-03-29 21:12:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 21:12:58] ANSI_COLOR="0;31"
[2026-03-29 21:12:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 21:12:58] HOME_URL="https://www.centos.org/"
[2026-03-29 21:12:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 21:12:58] 
[2026-03-29 21:12:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 21:12:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 21:12:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 21:12:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 21:12:58] 
[2026-03-29 21:12:58] 2026-03-29 19:12:27,583 | INFO     | **************************************
[2026-03-29 21:12:58] 2026-03-29 19:12:28,086 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 21:12:58] 2026-03-29 19:12:28,100 | INFO     | sufficient remaining disk space (270020902912 B)
[2026-03-29 21:12:58] 2026-03-29 19:12:28,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 21:12:58] 2026-03-29 19:12:28,100 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 21:12:58] 2026-03-29 19:12:28,100 | INFO     | update_server=False
[2026-03-29 21:12:58] 2026-03-29 19:12:28,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 21:12:58] 2026-03-29 19:12:28,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 21:12:58] 2026-03-29 19:12:28,470 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-29 21:12:58] 2026-03-29 19:12:28,470 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-29 21:12:58] 2026-03-29 19:12:28,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 21:12:58] 2026-03-29 19:12:28,470 | INFO     | will abort loop
[2026-03-29 21:12:58] 2026-03-29 19:12:28,494 | INFO     | all payload control threads have been joined
[2026-03-29 21:12:58] 2026-03-29 19:12:28,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 21:12:58] 2026-03-29 19:12:29,057 | INFO     | all data control threads have been joined
[2026-03-29 21:12:58] 2026-03-29 19:12:29,067 | INFO     | all job control threads have been joined
[2026-03-29 21:12:58] 2026-03-29 19:12:29,106 | INFO     | [job] retrieve thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,107 | INFO     | [job] queue monitor thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,476 | INFO     | [job] job monitor thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,499 | INFO     | [payload] control thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,545 | INFO     | [job] validate thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,648 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,679 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,821 | INFO     | [data] copytool_in thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,889 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:29,942 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,063 | INFO     | [data] control thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,073 | INFO     | [job] control thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,318 | INFO     | [payload] validate_post thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,541 | INFO     | [payload] failed_post thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,711 | INFO     | [data] copytool_out thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:30,805 | INFO     | [monitor] cgroup control has ended
[2026-03-29 21:12:58] 2026-03-29 19:12:30,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 21:12:58] 2026-03-29 19:12:34,986 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 21:12:58] 2026-03-29 19:12:36,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169120905024)>', '<ExcThread(monitor, started 140168765875968)>']
[2026-03-29 21:12:58] 2026-03-29 19:12:41,650 | INFO     | all workflow threads have been joined
[2026-03-29 21:12:58] 2026-03-29 19:12:41,651 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 21:12:58] 2026-03-29 19:12:41,651 | INFO     | traces error code: 0
[2026-03-29 21:12:58] 2026-03-29 19:12:41,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | INFO     | PID=154364 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 21:12:58] 2026-03-29 19:12:58,558 | INFO     | [monitor] control thread has ended
[2026-03-29 21:12:58] 2026-03-29 19:12:58,605 [wrapper] ==== pilot stdout END ====
[2026-03-29 21:12:58] 2026-03-29 19:12:58,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 21:12:58] 2026-03-29 19:12:58,610 [wrapper] pilotpid: 154364
[2026-03-29 21:12:58] 2026-03-29 19:12:58,612 [wrapper] Pilot exit status: 0
[2026-03-29 21:12:58] 2026-03-29 19:12:58,620 [wrapper] pandaids: 7065845380
[2026-03-29 21:12:58] 2026-03-29 19:12:58,637 [wrapper] cleanup supervisor_pilot  164828 154365
[2026-03-29 21:12:58] 2026-03-29 19:12:58,640 [wrapper] Test setup, not cleaning
[2026-03-29 21:12:58] 2026-03-29 19:12:58,643 [wrapper] apfmon messages muted
[2026-03-29 21:12:58] 2026-03-29 19:12:58,645 [wrapper] ==== wrapper stdout END ====
[2026-03-29 21:12:58] 2026-03-29 19:12:58,648 [wrapper] ==== wrapper stderr END ====
[2026-03-29 21:12:58]  *** Error codes and diagnostics ***
[2026-03-29 21:12:58]     "exeErrorCode": 0,
[2026-03-29 21:12:58]     "exeErrorDiag": "",
[2026-03-29 21:12:58]     "pilotErrorCode": 0,
[2026-03-29 21:12:58]     "pilotErrorDiag": "",
[2026-03-29 21:12:58]  *** Listing of results directory ***
[2026-03-29 21:12:58] total 416516
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc    585013 Mar 29 06:04 pilot3.tar.gz
[2026-03-29 21:12:58] -rwx------ 1 boinc boinc     36322 Mar 29 06:26 runpilot2-wrapper.sh
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc      5118 Mar 29 06:27 queuedata.json
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc       100 Mar 29 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 21:12:58] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 19:47 run_atlas
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc       105 Mar 29 19:47 job.xml
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc 226562711 Mar 29 19:47 EVNT.49263189._000008.pool.root.1
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc    597534 Mar 29 19:47 input.tar.gz
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc     15845 Mar 29 19:47 start_atlas.sh
[2026-03-29 21:12:58] drwxrwx--x 2 boinc boinc      4096 Mar 29 19:47 shared
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc         0 Mar 29 19:47 boinc_setup_complete
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc      6446 Mar 29 19:47 init_data.xml
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc         0 Mar 29 19:47 boinc_lockfile
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc      2571 Mar 29 19:47 pandaJob.out
[2026-03-29 21:12:58] -rw------- 1 boinc boinc   1003389 Mar 29 19:47 agis_schedconf.cvmfs.json
[2026-03-29 21:12:58] -rw------- 1 boinc boinc   1511579 Mar 29 19:47 agis_ddmendpoints.agis.ALL.json
[2026-03-29 21:12:58] -rw------- 1 boinc boinc       422 Mar 29 19:47 workernode_map.json
[2026-03-29 21:12:58] drwx------ 5 boinc boinc      4096 Mar 29 19:47 pilot3
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc       529 Mar 29 21:11 boinc_task_state.xml
[2026-03-29 21:12:58] -rw------- 1 boinc boinc 194042318 Mar 29 21:12 HITS.49263191._000184.pool.root.1
[2026-03-29 21:12:58] -rw------- 1 boinc boinc      1011 Mar 29 21:12 memory_monitor_summary.json
[2026-03-29 21:12:58] -rw------- 1 boinc boinc    248539 Mar 29 21:12 log.49263191._000184.job.log.tgz.1
[2026-03-29 21:12:58] -rw------- 1 boinc boinc      6304 Mar 29 21:12 heartbeat.json
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc      8192 Mar 29 21:12 boinc_mmap_file
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc        27 Mar 29 21:12 wrapper_checkpoint.txt
[2026-03-29 21:12:58] -rw------- 1 boinc boinc       746 Mar 29 21:12 pilotlog.txt
[2026-03-29 21:12:58] -rw------- 1 boinc boinc        95 Mar 29 21:12 pilot_heartbeat.json
[2026-03-29 21:12:58] -rw------- 1 boinc boinc    744777 Mar 29 21:12 log.49263191._000184.job.log.1
[2026-03-29 21:12:58] -rw------- 1 boinc boinc       357 Mar 29 21:12 output.list
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc       620 Mar 29 21:12 runtime_log
[2026-03-29 21:12:58] -rw------- 1 boinc boinc   1013760 Mar 29 21:12 result.tar.gz
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc      8896 Mar 29 21:12 runtime_log.err
[2026-03-29 21:12:58] -rw------- 1 boinc boinc       657 Mar 29 21:12 QuHMDmJuwQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmJjJKDmo3ZG2m.diag
[2026-03-29 21:12:58] -rw-r--r-- 1 boinc boinc     11633 Mar 29 21:12 stderr.txt
[2026-03-29 21:12:58] HITS file was successfully produced:
[2026-03-29 21:12:58] -rw------- 1 boinc boinc 194042318 Mar 29 21:12 shared/HITS.pool.root.1
[2026-03-29 21:12:58]  *** Contents of shared directory: ***
[2026-03-29 21:12:58] total 412352
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc 226562711 Mar 29 19:47 ATLAS.root_0
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc    597534 Mar 29 19:47 input.tar.gz
[2026-03-29 21:12:58] -rw-r--r-- 2 boinc boinc     15845 Mar 29 19:47 start_atlas.sh
[2026-03-29 21:12:58] -rw------- 1 boinc boinc 194042318 Mar 29 21:12 HITS.pool.root.1
[2026-03-29 21:12:58] -rw------- 1 boinc boinc   1013760 Mar 29 21:12 result.tar.gz
21:13:00 (150307): run_atlas exited; CPU time 14284.685751
21:13:00 (150307): called boinc_finish(0)

</stderr_txt>
]]>

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