Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:27 (1894576): wrapper (7.7.26015): starting
06:12:27 (1894576): wrapper: running run_atlas (--nthreads 3)
[2026-03-30 06:12:27] Arguments: --nthreads 3
[2026-03-30 06:12:27] Threads: 3
[2026-03-30 06:12:27] Checking for CVMFS
[2026-03-30 06:12:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 06:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 06:12:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 06:12:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 06:12:28] 2.9.2.0 1278530 5465 63968 157867 0 88 19621539 36864000 653 130560 0 2254902 99.984 214493 13693 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 06:12:28] CVMFS is ok
[2026-03-30 06:12:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 06:12:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 06:12:28] Further information can be found at the LHC@home message board.
[2026-03-30 06:12:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 06:12:28] Checking for apptainer binary...
[2026-03-30 06:12:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 06:12:28] Running /usr/bin/apptainer --version
[2026-03-30 06:12:28] apptainer version 1.4.1-1.1
[2026-03-30 06:12:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 06:12:28] thA389a
[2026-03-30 06:12:28] apptainer works
[2026-03-30 06:12:28] Set ATHENA_PROC_NUMBER=3
[2026-03-30 06:12:28] Set ATHENA_CORE_NUMBER=3
[2026-03-30 06:12:28] Starting ATLAS job with PandaID=7066766752
[2026-03-30 06:12:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 07:52:00]  *** The last 200 lines of the pilot log: ***
[2026-03-30 07:52:00] 2026-03-30 05:51:28,877 | INFO     | overall cleanup function is called
[2026-03-30 07:52:00] 2026-03-30 05:51:29,883 | INFO     | --- collectZombieJob: --- 10, [1903050]
[2026-03-30 07:52:00] 2026-03-30 05:51:29,883 | INFO     | zombie collector waiting for pid 1903050
[2026-03-30 07:52:00] 2026-03-30 05:51:29,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 07:52:00] 2026-03-30 05:51:29,883 | INFO     | collected zombie processes
[2026-03-30 07:52:00] 2026-03-30 05:51:29,883 | INFO     | will attempt to kill all subprocesses of pid=1903050
[2026-03-30 07:52:00] 2026-03-30 05:51:29,925 | INFO     | process IDs to be killed: [1903050] (in reverse order)
[2026-03-30 07:52:00] 2026-03-30 05:51:29,950 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 07:52:00] 2026-03-30 05:51:29,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 07:52:00] 2026-03-30 05:51:29,952 | INFO     | did not find any defunct processes belonging to 1903050
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | did not find any defunct processes belonging to 1903050
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | ready for new job
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | **************************************
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | **************************************
[2026-03-30 07:52:00] 2026-03-30 05:51:29,953 | INFO     | 
[2026-03-30 07:52:00] 2026-03-30 05:51:29,954 | INFO     | architecture information:
[2026-03-30 07:52:00] 2026-03-30 05:51:29,954 | INFO     | executing command: cat /etc/os-release
[2026-03-30 07:52:00] 2026-03-30 05:51:29,964 | INFO     | cat /etc/os-release:
[2026-03-30 07:52:00] NAME="CentOS Linux"
[2026-03-30 07:52:00] VERSION="7 (Core)"
[2026-03-30 07:52:00] ID="centos"
[2026-03-30 07:52:00] ID_LIKE="rhel fedora"
[2026-03-30 07:52:00] VERSION_ID="7"
[2026-03-30 07:52:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 07:52:00] ANSI_COLOR="0;31"
[2026-03-30 07:52:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 07:52:00] HOME_URL="https://www.centos.org/"
[2026-03-30 07:52:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 07:52:00] 
[2026-03-30 07:52:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 07:52:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 07:52:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 07:52:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 07:52:00] 
[2026-03-30 07:52:00] 2026-03-30 05:51:29,964 | INFO     | **************************************
[2026-03-30 07:52:00] 2026-03-30 05:51:30,467 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 07:52:00] 2026-03-30 05:51:30,477 | INFO     | sufficient remaining disk space (78778466304 B)
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | INFO     | update_server=False
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 07:52:00] 2026-03-30 05:51:30,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 07:52:00] 2026-03-30 05:51:30,816 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-30 07:52:00] 2026-03-30 05:51:30,817 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-30 07:52:00] 2026-03-30 05:51:30,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 07:52:00] 2026-03-30 05:51:30,817 | INFO     | will abort loop
[2026-03-30 07:52:00] 2026-03-30 05:51:31,131 | INFO     | all payload control threads have been joined
[2026-03-30 07:52:00] 2026-03-30 05:51:31,183 | INFO     | all data control threads have been joined
[2026-03-30 07:52:00] 2026-03-30 05:51:31,482 | INFO     | [job] retrieve thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:31,483 | INFO     | [job] queue monitor thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:31,700 | INFO     | all job control threads have been joined
[2026-03-30 07:52:00] 2026-03-30 05:51:31,822 | INFO     | [job] job monitor thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:31,932 | INFO     | [job] validate thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,008 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,009 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,014 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,137 | INFO     | [payload] control thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,167 | INFO     | [data] copytool_in thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,188 | INFO     | [data] control thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,322 | INFO     | [payload] failed_post thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,483 | INFO     | [data] copytool_out thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,706 | INFO     | [job] control thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:32,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 07:52:00] 2026-03-30 05:51:32,979 | INFO     | [payload] validate_post thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:36,875 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:41,485 | INFO     | job.realtimelogging is not enabled
[2026-03-30 07:52:00] 2026-03-30 05:51:42,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 07:52:00] 2026-03-30 05:51:46,987 | INFO     | [monitor] cgroup control has ended
[2026-03-30 07:52:00] 2026-03-30 05:51:48,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671132755776)>', '<ExcThread(monitor, started 140670480135936)>']
[2026-03-30 07:52:00] 2026-03-30 05:51:53,954 | INFO     | all workflow threads have been joined
[2026-03-30 07:52:00] 2026-03-30 05:51:53,954 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 07:52:00] 2026-03-30 05:51:53,954 | INFO     | traces error code: 0
[2026-03-30 07:52:00] 2026-03-30 05:51:53,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | INFO     | PID=1898622 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 07:52:00] 2026-03-30 05:52:00,203 | INFO     | [monitor] control thread has ended
[2026-03-30 07:52:00] 2026-03-30 05:52:00,248 [wrapper] ==== pilot stdout END ====
[2026-03-30 07:52:00] 2026-03-30 05:52:00,251 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 07:52:00] 2026-03-30 05:52:00,255 [wrapper] pilotpid: 1898622
[2026-03-30 07:52:00] 2026-03-30 05:52:00,258 [wrapper] Pilot exit status: 0
[2026-03-30 07:52:00] 2026-03-30 05:52:00,266 [wrapper] pandaids: 7066766752
[2026-03-30 07:52:00] 2026-03-30 05:52:00,282 [wrapper] cleanup supervisor_pilot 1910034 1898623
[2026-03-30 07:52:00] 2026-03-30 05:52:00,285 [wrapper] Test setup, not cleaning
[2026-03-30 07:52:00] 2026-03-30 05:52:00,288 [wrapper] apfmon messages muted
[2026-03-30 07:52:00] 2026-03-30 05:52:00,291 [wrapper] ==== wrapper stdout END ====
[2026-03-30 07:52:00] 2026-03-30 05:52:00,294 [wrapper] ==== wrapper stderr END ====
[2026-03-30 07:52:00]  *** Error codes and diagnostics ***
[2026-03-30 07:52:00]     "exeErrorCode": 0,
[2026-03-30 07:52:00]     "exeErrorDiag": "",
[2026-03-30 07:52:00]     "pilotErrorCode": 0,
[2026-03-30 07:52:00]     "pilotErrorDiag": "",
[2026-03-30 07:52:00]  *** Listing of results directory ***
[2026-03-30 07:52:00] total 418988
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc    585013 Mar 29 12:08 pilot3.tar.gz
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc      5118 Mar 29 12:09 queuedata.json
[2026-03-30 07:52:00] -rwx------ 1 boinc boinc     36322 Mar 29 12:09 runpilot2-wrapper.sh
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc       100 Mar 30 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 07:52:00] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 06:12 run_atlas
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc       105 Mar 30 06:12 job.xml
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc 221751801 Mar 30 06:12 EVNT.49263189._000040.pool.root.1
[2026-03-30 07:52:00] drwxrwx--x 2 boinc boinc      4096 Mar 30 06:12 shared
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc    597530 Mar 30 06:12 input.tar.gz
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc     15845 Mar 30 06:12 start_atlas.sh
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc         0 Mar 30 06:12 boinc_setup_complete
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc      6196 Mar 30 06:12 init_data.xml
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc         0 Mar 30 06:12 boinc_lockfile
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc      2570 Mar 30 06:12 pandaJob.out
[2026-03-30 07:52:00] -rw------- 1 boinc boinc   1004055 Mar 30 06:12 agis_schedconf.cvmfs.json
[2026-03-30 07:52:00] -rw------- 1 boinc boinc   1511579 Mar 30 06:12 agis_ddmendpoints.agis.ALL.json
[2026-03-30 07:52:00] -rw------- 1 boinc boinc       420 Mar 30 06:12 workernode_map.json
[2026-03-30 07:52:00] drwx------ 5 boinc boinc      4096 Mar 30 06:12 pilot3
[2026-03-30 07:52:00] -rw------- 1 boinc boinc 201136896 Mar 30 07:51 HITS.49263191._000977.pool.root.1
[2026-03-30 07:52:00] -rw------- 1 boinc boinc        95 Mar 30 07:51 pilot_heartbeat.json
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc       529 Mar 30 07:51 boinc_task_state.xml
[2026-03-30 07:52:00] -rw------- 1 boinc boinc      1019 Mar 30 07:51 memory_monitor_summary.json
[2026-03-30 07:52:00] -rw------- 1 boinc boinc    255009 Mar 30 07:51 log.49263191._000977.job.log.tgz.1
[2026-03-30 07:52:00] -rw------- 1 boinc boinc      6316 Mar 30 07:51 heartbeat.json
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc        27 Mar 30 07:51 wrapper_checkpoint.txt
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc      8192 Mar 30 07:51 boinc_mmap_file
[2026-03-30 07:52:00] -rw------- 1 boinc boinc       747 Mar 30 07:52 pilotlog.txt
[2026-03-30 07:52:00] -rw------- 1 boinc boinc    859929 Mar 30 07:52 log.49263191._000977.job.log.1
[2026-03-30 07:52:00] -rw------- 1 boinc boinc       357 Mar 30 07:52 output.list
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc       620 Mar 30 07:52 runtime_log
[2026-03-30 07:52:00] -rw------- 1 boinc boinc   1136640 Mar 30 07:52 result.tar.gz
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc      8901 Mar 30 07:52 runtime_log.err
[2026-03-30 07:52:00] -rw------- 1 boinc boinc       659 Mar 30 07:52 AXgKDmfG2Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDmVRMKDmeKstUn.diag
[2026-03-30 07:52:00] -rw-r--r-- 1 boinc boinc     11031 Mar 30 07:52 stderr.txt
[2026-03-30 07:52:00] HITS file was successfully produced:
[2026-03-30 07:52:00] -rw------- 1 boinc boinc 201136896 Mar 30 07:51 shared/HITS.pool.root.1
[2026-03-30 07:52:00]  *** Contents of shared directory: ***
[2026-03-30 07:52:00] total 414700
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc 221751801 Mar 30 06:12 ATLAS.root_0
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc    597530 Mar 30 06:12 input.tar.gz
[2026-03-30 07:52:00] -rw-r--r-- 2 boinc boinc     15845 Mar 30 06:12 start_atlas.sh
[2026-03-30 07:52:00] -rw------- 1 boinc boinc 201136896 Mar 30 07:51 HITS.pool.root.1
[2026-03-30 07:52:00] -rw------- 1 boinc boinc   1136640 Mar 30 07:52 result.tar.gz
07:52:02 (1894576): run_atlas exited; CPU time 16684.094328
07:52:02 (1894576): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN