Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:25:09 (572444): wrapper (7.7.26015): starting
20:25:09 (572444): wrapper: running run_atlas (--nthreads 3)
[2026-03-29 20:25:09] Arguments: --nthreads 3
[2026-03-29 20:25:09] Threads: 3
[2026-03-29 20:25:09] Checking for CVMFS
[2026-03-29 20:25:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 20:25:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 20:25:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 20:25:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 20:25:10] 2.9.2.0 339038 2243 72444 157852 1 49 25248719 36864001 0 130560 0 893616 99.982 87438 15410 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 20:25:10] CVMFS is ok
[2026-03-29 20:25:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 20:25:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 20:25:10] Further information can be found at the LHC@home message board.
[2026-03-29 20:25:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 20:25:10] Checking for apptainer binary...
[2026-03-29 20:25:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 20:25:10] Running /usr/bin/apptainer --version
[2026-03-29 20:25:10] apptainer version 1.4.1-1.1
[2026-03-29 20:25:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 20:25:10] thA371b
[2026-03-29 20:25:10] apptainer works
[2026-03-29 20:25:10] Set ATHENA_PROC_NUMBER=3
[2026-03-29 20:25:10] Set ATHENA_CORE_NUMBER=3
[2026-03-29 20:25:10] Starting ATLAS job with PandaID=7062824561
[2026-03-29 20:25:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 00:05:44]  *** The last 200 lines of the pilot log: ***
[2026-03-30 00:05:44] 2026-03-29 22:05:12,156 | INFO     | job 7062824561 has completed (purged errors)
[2026-03-30 00:05:44] 2026-03-29 22:05:12,156 | INFO     | overall cleanup function is called
[2026-03-30 00:05:44] 2026-03-29 22:05:13,162 | INFO     | --- collectZombieJob: --- 10, [580915]
[2026-03-30 00:05:44] 2026-03-29 22:05:13,162 | INFO     | zombie collector waiting for pid 580915
[2026-03-30 00:05:44] 2026-03-29 22:05:13,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 00:05:44] 2026-03-29 22:05:13,162 | INFO     | collected zombie processes
[2026-03-30 00:05:44] 2026-03-29 22:05:13,162 | INFO     | will attempt to kill all subprocesses of pid=580915
[2026-03-30 00:05:44] 2026-03-29 22:05:13,200 | INFO     | process IDs to be killed: [580915] (in reverse order)
[2026-03-30 00:05:44] 2026-03-29 22:05:13,224 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 00:05:44] 2026-03-29 22:05:13,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 00:05:44] 2026-03-29 22:05:13,225 | INFO     | did not find any defunct processes belonging to 580915
[2026-03-30 00:05:44] 2026-03-29 22:05:13,226 | INFO     | did not find any defunct processes belonging to 580915
[2026-03-30 00:05:44] 2026-03-29 22:05:13,226 | INFO     | ready for new job
[2026-03-30 00:05:44] 2026-03-29 22:05:13,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 00:05:44] 2026-03-29 22:05:13,227 | INFO     | **************************************
[2026-03-30 00:05:44] 2026-03-29 22:05:13,227 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 00:05:44] 2026-03-29 22:05:13,227 | INFO     | **************************************
[2026-03-30 00:05:44] 2026-03-29 22:05:13,227 | INFO     | 
[2026-03-30 00:05:44] 2026-03-29 22:05:13,228 | INFO     | architecture information:
[2026-03-30 00:05:44] 2026-03-29 22:05:13,228 | INFO     | executing command: cat /etc/os-release
[2026-03-30 00:05:44] 2026-03-29 22:05:13,237 | INFO     | cat /etc/os-release:
[2026-03-30 00:05:44] NAME="CentOS Linux"
[2026-03-30 00:05:44] VERSION="7 (Core)"
[2026-03-30 00:05:44] ID="centos"
[2026-03-30 00:05:44] ID_LIKE="rhel fedora"
[2026-03-30 00:05:44] VERSION_ID="7"
[2026-03-30 00:05:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 00:05:44] ANSI_COLOR="0;31"
[2026-03-30 00:05:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 00:05:44] HOME_URL="https://www.centos.org/"
[2026-03-30 00:05:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 00:05:44] 
[2026-03-30 00:05:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 00:05:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 00:05:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 00:05:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 00:05:44] 
[2026-03-30 00:05:44] 2026-03-29 22:05:13,237 | INFO     | **************************************
[2026-03-30 00:05:44] 2026-03-29 22:05:13,740 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | INFO     | sufficient remaining disk space (234896752640 B)
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | INFO     | update_server=False
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 00:05:44] 2026-03-29 22:05:13,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 00:05:44] 2026-03-29 22:05:13,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 00:05:44] 2026-03-29 22:05:13,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 00:05:44] 2026-03-29 22:05:13,751 | INFO     | aborting loop
[2026-03-30 00:05:44] 2026-03-29 22:05:14,058 | INFO     | all data control threads have been joined
[2026-03-30 00:05:44] 2026-03-29 22:05:14,140 | INFO     | all payload control threads have been joined
[2026-03-30 00:05:44] 2026-03-29 22:05:14,351 | INFO     | job.realtimelogging is not enabled
[2026-03-30 00:05:44] 2026-03-29 22:05:14,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 00:05:44] 2026-03-29 22:05:14,756 | INFO     | [job] retrieve thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:14,756 | INFO     | [job] queue monitor thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:14,756 | INFO     | [job] job monitor thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:14,757 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:14,824 | INFO     | [payload] failed_post thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:14,876 | INFO     | all job control threads have been joined
[2026-03-30 00:05:44] 2026-03-29 22:05:15,048 | INFO     | [data] copytool_in thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:15,063 | INFO     | [data] control thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:15,146 | INFO     | [payload] control thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:15,357 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:15,792 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:15,882 | INFO     | [job] control thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:16,108 | INFO     | [job] validate thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:16,124 | INFO     | [payload] validate_post thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:16,126 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:16,610 | INFO     | [data] copytool_out thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:17,757 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 00:05:44] 2026-03-29 22:05:35,894 | INFO     | [monitor] cgroup control has ended
[2026-03-30 00:05:44] 2026-03-29 22:05:37,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140521635276608)>', '<ExcThread(monitor, started 140521280345856)>']
[2026-03-30 00:05:44] 2026-03-29 22:05:42,814 | INFO     | all workflow threads have been joined
[2026-03-30 00:05:44] 2026-03-29 22:05:42,814 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 00:05:44] 2026-03-29 22:05:42,814 | INFO     | traces error code: 0
[2026-03-30 00:05:44] 2026-03-29 22:05:42,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 00:05:44] 2026-03-29 22:05:44,372 | INFO     | PID=576489 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-30 00:05:44] 2026-03-29 22:05:44,373 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 00:05:44] 2026-03-29 22:05:44,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 00:05:44] 2026-03-29 22:05:44,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 00:05:44] 2026-03-29 22:05:44,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 00:05:44] 2026-03-29 22:05:44,373 | INFO     | [monitor] control thread has ended
[2026-03-30 00:05:44] 2026-03-29 22:05:44,419 [wrapper] ==== pilot stdout END ====
[2026-03-30 00:05:44] 2026-03-29 22:05:44,421 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 00:05:44] 2026-03-29 22:05:44,424 [wrapper] pilotpid: 576489
[2026-03-30 00:05:44] 2026-03-29 22:05:44,426 [wrapper] Pilot exit status: 0
[2026-03-30 00:05:44] 2026-03-29 22:05:44,433 [wrapper] pandaids: 7062824561
[2026-03-30 00:05:44] 2026-03-29 22:05:44,448 [wrapper] cleanup supervisor_pilot  587872 576490
[2026-03-30 00:05:44] 2026-03-29 22:05:44,451 [wrapper] Test setup, not cleaning
[2026-03-30 00:05:44] 2026-03-29 22:05:44,453 [wrapper] apfmon messages muted
[2026-03-30 00:05:44] 2026-03-29 22:05:44,455 [wrapper] ==== wrapper stdout END ====
[2026-03-30 00:05:44] 2026-03-29 22:05:44,457 [wrapper] ==== wrapper stderr END ====
[2026-03-30 00:05:44]  *** Error codes and diagnostics ***
[2026-03-30 00:05:44]     "exeErrorCode": 0,
[2026-03-30 00:05:44]     "exeErrorDiag": "",
[2026-03-30 00:05:44]     "pilotErrorCode": 0,
[2026-03-30 00:05:44]     "pilotErrorDiag": "",
[2026-03-30 00:05:44]  *** Listing of results directory ***
[2026-03-30 00:05:44] total 477048
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc    585013 Mar 23 06:30 pilot3.tar.gz
[2026-03-30 00:05:44] -rwx------ 1 boinc boinc     36322 Mar 23 06:42 runpilot2-wrapper.sh
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc      5111 Mar 23 06:47 queuedata.json
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc       100 Mar 29 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 00:05:44] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 20:25 run_atlas
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc       105 Mar 29 20:25 job.xml
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc 241796617 Mar 29 20:25 EVNT.49128472._000006.pool.root.1
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc    597538 Mar 29 20:25 input.tar.gz
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc     15845 Mar 29 20:25 start_atlas.sh
[2026-03-30 00:05:44] drwxrwx--x 2 boinc boinc      4096 Mar 29 20:25 shared
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc         0 Mar 29 20:25 boinc_setup_complete
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc      6440 Mar 29 20:25 init_data.xml
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc         0 Mar 29 20:25 boinc_lockfile
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc      2628 Mar 29 20:25 pandaJob.out
[2026-03-30 00:05:44] -rw------- 1 boinc boinc   1004063 Mar 29 20:25 agis_schedconf.cvmfs.json
[2026-03-30 00:05:44] -rw------- 1 boinc boinc       428 Mar 29 20:25 workernode_map.json
[2026-03-30 00:05:44] drwx------ 5 boinc boinc      4096 Mar 29 20:25 pilot3
[2026-03-30 00:05:44] -rw------- 1 boinc boinc 238316517 Mar 30 00:04 HITS.49178289._000140.pool.root.1
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc       530 Mar 30 00:04 boinc_task_state.xml
[2026-03-30 00:05:44] -rw------- 1 boinc boinc      1018 Mar 30 00:05 memory_monitor_summary.json
[2026-03-30 00:05:44] -rw------- 1 boinc boinc   1511579 Mar 30 00:05 agis_ddmendpoints.agis.ALL.json
[2026-03-30 00:05:44] -rw------- 1 boinc boinc    371101 Mar 30 00:05 log.49178289._000140.job.log.tgz.1
[2026-03-30 00:05:44] -rw------- 1 boinc boinc      6312 Mar 30 00:05 heartbeat.json
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc        28 Mar 30 00:05 wrapper_checkpoint.txt
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc      8192 Mar 30 00:05 boinc_mmap_file
[2026-03-30 00:05:44] -rw------- 1 boinc boinc       746 Mar 30 00:05 pilotlog.txt
[2026-03-30 00:05:44] -rw------- 1 boinc boinc        95 Mar 30 00:05 pilot_heartbeat.json
[2026-03-30 00:05:44] -rw------- 1 boinc boinc   1859407 Mar 30 00:05 log.49178289._000140.job.log.1
[2026-03-30 00:05:44] -rw------- 1 boinc boinc       357 Mar 30 00:05 output.list
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc       620 Mar 30 00:05 runtime_log
[2026-03-30 00:05:44] -rw------- 1 boinc boinc   2252800 Mar 30 00:05 result.tar.gz
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc      8902 Mar 30 00:05 runtime_log.err
[2026-03-30 00:05:44] -rw------- 1 boinc boinc       661 Mar 30 00:05 KnbMDmXEnO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmqU9LDmYCT4Ao.diag
[2026-03-30 00:05:44] -rw-r--r-- 1 boinc boinc     10891 Mar 30 00:05 stderr.txt
[2026-03-30 00:05:44] HITS file was successfully produced:
[2026-03-30 00:05:44] -rw------- 1 boinc boinc 238316517 Mar 30 00:04 shared/HITS.pool.root.1
[2026-03-30 00:05:44]  *** Contents of shared directory: ***
[2026-03-30 00:05:44] total 471672
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc 241796617 Mar 29 20:25 ATLAS.root_0
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc    597538 Mar 29 20:25 input.tar.gz
[2026-03-30 00:05:44] -rw-r--r-- 2 boinc boinc     15845 Mar 29 20:25 start_atlas.sh
[2026-03-30 00:05:44] -rw------- 1 boinc boinc 238316517 Mar 30 00:04 HITS.pool.root.1
[2026-03-30 00:05:44] -rw------- 1 boinc boinc   2252800 Mar 30 00:05 result.tar.gz
00:05:46 (572444): run_atlas exited; CPU time 38384.968614
00:05:46 (572444): called boinc_finish(0)

</stderr_txt>
]]>

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