Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:02:21 (3404887): wrapper (7.7.26015): starting
01:02:21 (3404887): wrapper: running run_atlas (--nthreads 2)
[2026-03-30 01:02:21] Arguments: --nthreads 2
[2026-03-30 01:02:21] Threads: 2
[2026-03-30 01:02:21] Checking for CVMFS
[2026-03-30 01:02:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 01:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 01:02:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 01:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 01:02:22] 2.9.2.0 3201293 3079 56712 157859 2 50 19258981 36864000 0 130560 0 799603 99.974 115761 15118 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-30 01:02:22] CVMFS is ok
[2026-03-30 01:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-30 01:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-30 01:02:22] Further information can be found at the LHC@home message board.
[2026-03-30 01:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 01:02:22] Checking for apptainer binary...
[2026-03-30 01:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 01:02:22] Running /usr/bin/apptainer --version
[2026-03-30 01:02:22] apptainer version 1.4.1-1.1
[2026-03-30 01:02:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 01:02:22] magicA244
[2026-03-30 01:02:22] apptainer works
[2026-03-30 01:02:22] Set ATHENA_PROC_NUMBER=2
[2026-03-30 01:02:22] Set ATHENA_CORE_NUMBER=2
[2026-03-30 01:02:22] Starting ATLAS job with PandaID=7066670910
[2026-03-30 01:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 03:10:20]  *** The last 200 lines of the pilot log: ***
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | job 7066670910 has completed (purged errors)
[2026-03-30 03:10:20] 2026-03-30 01:09:48,600 | INFO     | overall cleanup function is called
[2026-03-30 03:10:20] 2026-03-30 01:09:49,607 | INFO     | --- collectZombieJob: --- 10, [3413327]
[2026-03-30 03:10:20] 2026-03-30 01:09:49,607 | INFO     | zombie collector waiting for pid 3413327
[2026-03-30 03:10:20] 2026-03-30 01:09:49,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 03:10:20] 2026-03-30 01:09:49,607 | INFO     | collected zombie processes
[2026-03-30 03:10:20] 2026-03-30 01:09:49,608 | INFO     | will attempt to kill all subprocesses of pid=3413327
[2026-03-30 03:10:20] 2026-03-30 01:09:49,637 | INFO     | process IDs to be killed: [3413327] (in reverse order)
[2026-03-30 03:10:20] 2026-03-30 01:09:49,658 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 03:10:20] 2026-03-30 01:09:49,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 03:10:20] 2026-03-30 01:09:49,659 | INFO     | did not find any defunct processes belonging to 3413327
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | did not find any defunct processes belonging to 3413327
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | ready for new job
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | **************************************
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | **************************************
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | 
[2026-03-30 03:10:20] 2026-03-30 01:09:49,660 | INFO     | architecture information:
[2026-03-30 03:10:20] 2026-03-30 01:09:49,661 | INFO     | executing command: cat /etc/os-release
[2026-03-30 03:10:20] 2026-03-30 01:09:49,669 | INFO     | cat /etc/os-release:
[2026-03-30 03:10:20] NAME="CentOS Linux"
[2026-03-30 03:10:20] VERSION="7 (Core)"
[2026-03-30 03:10:20] ID="centos"
[2026-03-30 03:10:20] ID_LIKE="rhel fedora"
[2026-03-30 03:10:20] VERSION_ID="7"
[2026-03-30 03:10:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 03:10:20] ANSI_COLOR="0;31"
[2026-03-30 03:10:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 03:10:20] HOME_URL="https://www.centos.org/"
[2026-03-30 03:10:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 03:10:20] 
[2026-03-30 03:10:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 03:10:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 03:10:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 03:10:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 03:10:20] 
[2026-03-30 03:10:20] 2026-03-30 01:09:49,669 | INFO     | **************************************
[2026-03-30 03:10:20] 2026-03-30 01:09:50,171 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | INFO     | sufficient remaining disk space (504959598592 B)
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | INFO     | update_server=False
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 03:10:20] 2026-03-30 01:09:50,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 03:10:20] 2026-03-30 01:09:50,491 | INFO     | all data control threads have been joined
[2026-03-30 03:10:20] 2026-03-30 01:09:50,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 03:10:20] 2026-03-30 01:09:50,732 | INFO     | aborting loop
[2026-03-30 03:10:20] 2026-03-30 01:09:51,191 | INFO     | [job] retrieve thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:51,192 | INFO     | [job] queue monitor thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:51,285 | INFO     | all job control threads have been joined
[2026-03-30 03:10:20] 2026-03-30 01:09:51,289 | INFO     | all payload control threads have been joined
[2026-03-30 03:10:20] 2026-03-30 01:09:51,344 | INFO     | [payload] validate_post thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:51,497 | INFO     | [data] control thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:51,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 03:10:20] 2026-03-30 01:09:51,738 | INFO     | [job] job monitor thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 03:10:20] 2026-03-30 01:09:52,163 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,191 | INFO     | [job] validate thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,246 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,292 | INFO     | [job] control thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,294 | INFO     | [payload] control thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,337 | INFO     | [data] copytool_in thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,380 | INFO     | [payload] failed_post thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,387 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:52,546 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:53,504 | INFO     | [data] copytool_out thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:54,604 | INFO     | [monitor] cgroup control has ended
[2026-03-30 03:10:20] 2026-03-30 01:09:56,029 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 03:10:20] 2026-03-30 01:09:57,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555224516416)>', '<ExcThread(monitor, started 140554700560128)>']
[2026-03-30 03:10:20] 2026-03-30 01:10:02,960 | INFO     | all workflow threads have been joined
[2026-03-30 03:10:20] 2026-03-30 01:10:02,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 03:10:20] 2026-03-30 01:10:02,961 | INFO     | traces error code: 0
[2026-03-30 03:10:20] 2026-03-30 01:10:02,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 03:10:20] 2026-03-30 01:10:20,256 | INFO     | PID=3408917 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 03:10:20] 2026-03-30 01:10:20,257 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 03:10:20] 2026-03-30 01:10:20,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 03:10:20] 2026-03-30 01:10:20,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 03:10:20] 2026-03-30 01:10:20,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 03:10:20] 2026-03-30 01:10:20,257 | INFO     | [monitor] control thread has ended
[2026-03-30 03:10:20] 2026-03-30 01:10:20,296 [wrapper] ==== pilot stdout END ====
[2026-03-30 03:10:20] 2026-03-30 01:10:20,299 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 03:10:20] 2026-03-30 01:10:20,301 [wrapper] pilotpid: 3408917
[2026-03-30 03:10:20] 2026-03-30 01:10:20,304 [wrapper] Pilot exit status: 0
[2026-03-30 03:10:20] 2026-03-30 01:10:20,310 [wrapper] pandaids: 7066670910
[2026-03-30 03:10:20] 2026-03-30 01:10:20,322 [wrapper] cleanup supervisor_pilot 3418975 3408918
[2026-03-30 03:10:20] 2026-03-30 01:10:20,324 [wrapper] Test setup, not cleaning
[2026-03-30 03:10:20] 2026-03-30 01:10:20,326 [wrapper] apfmon messages muted
[2026-03-30 03:10:20] 2026-03-30 01:10:20,328 [wrapper] ==== wrapper stdout END ====
[2026-03-30 03:10:20] 2026-03-30 01:10:20,330 [wrapper] ==== wrapper stderr END ====
[2026-03-30 03:10:20]  *** Error codes and diagnostics ***
[2026-03-30 03:10:20]     "exeErrorCode": 0,
[2026-03-30 03:10:20]     "exeErrorDiag": "",
[2026-03-30 03:10:20]     "pilotErrorCode": 0,
[2026-03-30 03:10:20]     "pilotErrorDiag": "",
[2026-03-30 03:10:20]  *** Listing of results directory ***
[2026-03-30 03:10:20] total 416428
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc    585013 Mar 29 10:23 pilot3.tar.gz
[2026-03-30 03:10:20] -rwx------ 1 boinc boinc     36322 Mar 29 10:24 runpilot2-wrapper.sh
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc      5118 Mar 29 10:24 queuedata.json
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc       100 Mar 30 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 03:10:20] -rwxr-xr-x 1 boinc boinc      7986 Mar 30 01:02 run_atlas
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc       105 Mar 30 01:02 job.xml
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc 225604521 Mar 30 01:02 EVNT.49263206._000038.pool.root.1
[2026-03-30 03:10:20] drwxrwx--x 2 boinc boinc      4096 Mar 30 01:02 shared
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc    597526 Mar 30 01:02 input.tar.gz
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc     15845 Mar 30 01:02 start_atlas.sh
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc         0 Mar 30 01:02 boinc_setup_complete
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc      6208 Mar 30 01:02 init_data.xml
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc         0 Mar 30 01:02 boinc_lockfile
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc      2572 Mar 30 01:02 pandaJob.out
[2026-03-30 03:10:20] -rw------- 1 boinc boinc   1004063 Mar 30 01:02 agis_schedconf.cvmfs.json
[2026-03-30 03:10:20] -rw------- 1 boinc boinc   1511579 Mar 30 01:02 agis_ddmendpoints.agis.ALL.json
[2026-03-30 03:10:20] -rw------- 1 boinc boinc       420 Mar 30 01:02 workernode_map.json
[2026-03-30 03:10:20] drwx------ 5 boinc boinc      4096 Mar 30 01:02 pilot3
[2026-03-30 03:10:20] -rw------- 1 boinc boinc 194114715 Mar 30 03:09 HITS.49263208._001400.pool.root.1
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc       529 Mar 30 03:09 boinc_task_state.xml
[2026-03-30 03:10:20] -rw------- 1 boinc boinc      1016 Mar 30 03:09 memory_monitor_summary.json
[2026-03-30 03:10:20] -rw------- 1 boinc boinc    293381 Mar 30 03:09 log.49263208._001400.job.log.tgz.1
[2026-03-30 03:10:20] -rw------- 1 boinc boinc      6298 Mar 30 03:09 heartbeat.json
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc        27 Mar 30 03:10 wrapper_checkpoint.txt
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc      8192 Mar 30 03:10 boinc_mmap_file
[2026-03-30 03:10:20] -rw------- 1 boinc boinc       747 Mar 30 03:10 pilotlog.txt
[2026-03-30 03:10:20] -rw------- 1 boinc boinc        95 Mar 30 03:10 pilot_heartbeat.json
[2026-03-30 03:10:20] -rw------- 1 boinc boinc   1096754 Mar 30 03:10 log.49263208._001400.job.log.1
[2026-03-30 03:10:20] -rw------- 1 boinc boinc       357 Mar 30 03:10 output.list
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc       620 Mar 30 03:10 runtime_log
[2026-03-30 03:10:20] -rw------- 1 boinc boinc   1413120 Mar 30 03:10 result.tar.gz
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc      8911 Mar 30 03:10 runtime_log.err
[2026-03-30 03:10:20] -rw------- 1 boinc boinc       661 Mar 30 03:10 7lNLDmLc0Q9n9Rq4apOajLDm4fhM0noT9bVoINGKDmnKMKDmuZWVcm.diag
[2026-03-30 03:10:20] -rw-r--r-- 1 boinc boinc     11933 Mar 30 03:10 stderr.txt
[2026-03-30 03:10:20] HITS file was successfully produced:
[2026-03-30 03:10:20] -rw------- 1 boinc boinc 194114715 Mar 30 03:09 shared/HITS.pool.root.1
[2026-03-30 03:10:20]  *** Contents of shared directory: ***
[2026-03-30 03:10:20] total 411872
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc 225604521 Mar 30 01:02 ATLAS.root_0
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc    597526 Mar 30 01:02 input.tar.gz
[2026-03-30 03:10:20] -rw-r--r-- 2 boinc boinc     15845 Mar 30 01:02 start_atlas.sh
[2026-03-30 03:10:20] -rw------- 1 boinc boinc 194114715 Mar 30 03:09 HITS.pool.root.1
[2026-03-30 03:10:20] -rw------- 1 boinc boinc   1413120 Mar 30 03:10 result.tar.gz
03:10:21 (3404887): run_atlas exited; CPU time 14674.800337
03:10:21 (3404887): called boinc_finish(0)

</stderr_txt>
]]>

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