Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:56:45 (5411): wrapper (7.7.26015): starting
00:56:45 (5411): wrapper: running run_atlas (--nthreads 8)
[2026-03-30 00:56:45] Arguments: --nthreads 8
[2026-03-30 00:56:45] Threads: 8
[2026-03-30 00:56:45] Checking for CVMFS
[2026-03-30 00:56:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-30 00:56:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-30 00:56:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-30 00:56:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-30 00:56:48] 2.11.2.0 32469 149803 135708 157859 3 55 22041172 25165825 899 130560 155 46803518 99.772 43516271 1220 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-30 00:56:48] CVMFS is ok
[2026-03-30 00:56:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-30 00:56:48] Checking for apptainer binary...
[2026-03-30 00:56:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-30 00:56:48] Running /usr/bin/apptainer --version
[2026-03-30 00:56:48] apptainer version 1.3.2-1.el7
[2026-03-30 00:56:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-30 00:57:08] cg-vwn363.simple-grid.lan
[2026-03-30 00:57:08] apptainer works
[2026-03-30 00:57:08] Set ATHENA_PROC_NUMBER=8
[2026-03-30 00:57:08] Set ATHENA_CORE_NUMBER=8
[2026-03-30 00:57:08] Starting ATLAS job with PandaID=7066692877
[2026-03-30 00:57:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 05:34:50]  *** The last 200 lines of the pilot log: ***
[2026-03-30 05:34:50] 2026-03-30 03:33:57,758 | INFO     | total number of processed events: 400 (read)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,760 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7066692877/memory_monitor_summary.json (trf name=prmon)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,761 | INFO     | extracted standard info from prmon json
[2026-03-30 05:34:50] 2026-03-30 03:33:57,761 | INFO     | extracted standard memory fields from prmon json
[2026-03-30 05:34:50] 2026-03-30 03:33:57,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-30 05:34:50] 2026-03-30 03:33:57,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-30 05:34:50] 2026-03-30 03:33:57,762 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-30 05:34:50] 2026-03-30 03:33:57,767 | INFO     | fitting pss+swap vs Time
[2026-03-30 05:34:50] 2026-03-30 03:33:57,768 | INFO     | sum of square deviations: 5449944045.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,771 | INFO     | sum of deviations: 106869202814.49986
[2026-03-30 05:34:50] 2026-03-30 03:33:57,771 | INFO     | mean x: 1774833685.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,771 | INFO     | mean y: 2443228.280769231
[2026-03-30 05:34:50] 2026-03-30 03:33:57,771 | INFO     | intersect: -34800677598.56907
[2026-03-30 05:34:50] 2026-03-30 03:33:57,772 | INFO     | chi2: 8.633236405471507
[2026-03-30 05:34:50] 2026-03-30 03:33:57,772 | INFO     | sum of square deviations: 5141528960.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,779 | INFO     | sum of deviations: 122116373665.00026
[2026-03-30 05:34:50] 2026-03-30 03:33:57,779 | INFO     | mean x: 1774833533.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,779 | INFO     | mean y: 2450634.9176470586
[2026-03-30 05:34:50] 2026-03-30 03:33:57,779 | INFO     | intersect: -42151592762.51574
[2026-03-30 05:34:50] 2026-03-30 03:33:57,780 | INFO     | chi2: 7.937752748338713
[2026-03-30 05:34:50] 2026-03-30 03:33:57,780 | INFO     | current chi2=7.937752748338713 (change=8.05588570112612 %)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,780 | INFO     | right removable region: 254
[2026-03-30 05:34:50] 2026-03-30 03:33:57,781 | INFO     | sum of square deviations: 5141528960.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,783 | INFO     | sum of deviations: 15863697697.999994
[2026-03-30 05:34:50] 2026-03-30 03:33:57,783 | INFO     | mean x: 1774833838.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,784 | INFO     | mean y: 2488200.933333333
[2026-03-30 05:34:50] 2026-03-30 03:33:57,784 | INFO     | intersect: -5473592492.0388
[2026-03-30 05:34:50] 2026-03-30 03:33:57,784 | INFO     | chi2: 3.5816271583238777
[2026-03-30 05:34:50] 2026-03-30 03:33:57,784 | INFO     | current chi2=3.5816271583238777 (change=58.51350536336592 %)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,785 | INFO     | sum of square deviations: 4844974562.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,787 | INFO     | sum of deviations: -50315770852.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,788 | INFO     | mean x: 1774833990.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,788 | INFO     | mean y: 2522183.964
[2026-03-30 05:34:50] 2026-03-30 03:33:57,788 | INFO     | intersect: 18434433273.533558
[2026-03-30 05:34:50] 2026-03-30 03:33:57,788 | INFO     | chi2: 1.0468252243473137
[2026-03-30 05:34:50] 2026-03-30 03:33:57,789 | INFO     | current chi2=1.0468252243473137 (change=70.7723563041887 %)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,789 | INFO     | sum of square deviations: 4560048290.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,791 | INFO     | sum of deviations: -63714434303.00001
[2026-03-30 05:34:50] 2026-03-30 03:33:57,792 | INFO     | mean x: 1774834143.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,792 | INFO     | mean y: 2529319.387755102
[2026-03-30 05:34:50] 2026-03-30 03:33:57,792 | INFO     | intersect: 24801072275.803425
[2026-03-30 05:34:50] 2026-03-30 03:33:57,792 | INFO     | chi2: 0.8881728708472758
[2026-03-30 05:34:50] 2026-03-30 03:33:57,793 | INFO     | current chi2=0.8881728708472758 (change=15.155572277975654 %)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,793 | INFO     | left removable region: 30
[2026-03-30 05:34:50] 2026-03-30 03:33:57,793 | INFO     | sum of square deviations: 3485088600.0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,795 | INFO     | sum of deviations: -34946206338.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,796 | INFO     | mean x: 1774834417.5
[2026-03-30 05:34:50] 2026-03-30 03:33:57,796 | INFO     | mean y: 2532361.6383928573
[2026-03-30 05:34:50] 2026-03-30 03:33:57,796 | INFO     | intersect: 17799419869.92913
[2026-03-30 05:34:50] 2026-03-30 03:33:57,796 | INFO     | chi2: 0.09859102667760405
[2026-03-30 05:34:50] 2026-03-30 03:33:57,796 | INFO     | current memory leak: -10.03 B/s (using 224 data points, chi2=0.10)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,797 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,797 | INFO     | ..............................
[2026-03-30 05:34:50] 2026-03-30 03:33:57,797 | INFO     | . Timing measurements:
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . get job = 0 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . initial setup = 118 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . payload setup = 261 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . stage-in = 0 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . payload execution = 15957 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . stage-out = 4 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | . log creation = 1 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,798 | INFO     | ..............................
[2026-03-30 05:34:50] 2026-03-30 03:33:57,961 | INFO     | 
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | job summary report
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | --------------------------------------------------
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | PanDA job id: 7066692877
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | task id: 49263191
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | errors: (none)
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | pilot state: finished 
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | transexitcode: 0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | exeerrorcode: 0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,962 | INFO     | exeerrordiag: 
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | exitcode: 0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | exitmsg: OK
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | cpuconsumptiontime: 60289 s
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | nevents: 400
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | neventsw: 0
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | pid: 13887
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | pgrp: 13887
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | corecount: 8
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | event service: False
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | sizes: {0: 2279103, 1: 2279788, 2: 2280249, 13: 2280249, 16223: 2311584, 16227: 2320582, 16230: 2320766, 16234: 2320960}
[2026-03-30 05:34:50] 2026-03-30 03:33:57,963 | INFO     | --------------------------------------------------
[2026-03-30 05:34:50] 2026-03-30 03:33:57,964 | INFO     | 
[2026-03-30 05:34:50] 2026-03-30 03:33:57,964 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-30 05:34:50] 2026-03-30 03:33:58,337 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,339 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 05:34:50] 2026-03-30 03:33:58,340 | INFO     | job 7066692877 has completed (purged errors)
[2026-03-30 05:34:50] 2026-03-30 03:33:58,340 | INFO     | overall cleanup function is called
[2026-03-30 05:34:50] 2026-03-30 03:33:59,349 | INFO     | --- collectZombieJob: --- 10, [13887]
[2026-03-30 05:34:50] 2026-03-30 03:33:59,349 | INFO     | zombie collector waiting for pid 13887
[2026-03-30 05:34:50] 2026-03-30 03:33:59,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 05:34:50] 2026-03-30 03:33:59,349 | INFO     | collected zombie processes
[2026-03-30 05:34:50] 2026-03-30 03:33:59,350 | INFO     | will attempt to kill all subprocesses of pid=13887
[2026-03-30 05:34:50] 2026-03-30 03:33:59,428 | INFO     | process IDs to be killed: [13887] (in reverse order)
[2026-03-30 05:34:50] 2026-03-30 03:34:00,367 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 05:34:50] 2026-03-30 03:34:00,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 05:34:50] 2026-03-30 03:34:00,370 | INFO     | did not find any defunct processes belonging to 13887
[2026-03-30 05:34:50] 2026-03-30 03:34:00,372 | INFO     | did not find any defunct processes belonging to 13887
[2026-03-30 05:34:50] 2026-03-30 03:34:00,372 | INFO     | ready for new job
[2026-03-30 05:34:50] 2026-03-30 03:34:00,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 05:34:50] 2026-03-30 03:34:00,374 | INFO     | **************************************
[2026-03-30 05:34:50] 2026-03-30 03:34:00,375 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 05:34:50] 2026-03-30 03:34:00,375 | INFO     | **************************************
[2026-03-30 05:34:50] 2026-03-30 03:34:00,375 | INFO     | 
[2026-03-30 05:34:50] 2026-03-30 03:34:00,376 | INFO     | pilot is running in a VM
[2026-03-30 05:34:50] 2026-03-30 03:34:00,376 | INFO     | architecture information:
[2026-03-30 05:34:50] 2026-03-30 03:34:00,382 | INFO     | executing command: cat /etc/os-release
[2026-03-30 05:34:50] 2026-03-30 03:34:00,669 | INFO     | cat /etc/os-release:
[2026-03-30 05:34:50] NAME="CentOS Linux"
[2026-03-30 05:34:50] VERSION="7 (Core)"
[2026-03-30 05:34:50] ID="centos"
[2026-03-30 05:34:50] ID_LIKE="rhel fedora"
[2026-03-30 05:34:50] VERSION_ID="7"
[2026-03-30 05:34:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 05:34:50] ANSI_COLOR="0;31"
[2026-03-30 05:34:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 05:34:50] HOME_URL="https://www.centos.org/"
[2026-03-30 05:34:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 05:34:50] 
[2026-03-30 05:34:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 05:34:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 05:34:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 05:34:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 05:34:50] 
[2026-03-30 05:34:50] 2026-03-30 03:34:00,670 | INFO     | **************************************
[2026-03-30 05:34:50] 2026-03-30 03:34:01,173 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-30 05:34:50] 2026-03-30 03:34:01,464 | INFO     | sufficient remaining disk space (496804823040 B)
[2026-03-30 05:34:50] 2026-03-30 03:34:01,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 05:34:50] 2026-03-30 03:34:01,464 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 05:34:50] 2026-03-30 03:34:01,464 | INFO     | update_server=False
[2026-03-30 05:34:50] 2026-03-30 03:34:01,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 05:34:50] 2026-03-30 03:34:01,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 05:34:50] 2026-03-30 03:34:01,757 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-30 05:34:50] 2026-03-30 03:34:01,757 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-30 05:34:50] 2026-03-30 03:34:01,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 05:34:50] 2026-03-30 03:34:01,758 | INFO     | will abort loop
[2026-03-30 05:34:50] 2026-03-30 03:34:01,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 05:34:50] 2026-03-30 03:34:02,106 | INFO     | all data control threads have been joined
[2026-03-30 05:34:50] 2026-03-30 03:34:02,410 | INFO     | all payload control threads have been joined
[2026-03-30 05:34:50] 2026-03-30 03:34:02,470 | INFO     | [job] retrieve thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:02,576 | INFO     | [payload] validate_post thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:02,612 | INFO     | all job control threads have been joined
[2026-03-30 05:34:50] 2026-03-30 03:34:02,763 | INFO     | [job] job monitor thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:02,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 05:34:50] 2026-03-30 03:34:03,059 | INFO     | [job] validate thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,064 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,112 | INFO     | [data] control thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,263 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,338 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,416 | INFO     | [payload] control thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,518 | INFO     | [data] copytool_in thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,534 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,618 | INFO     | [job] control thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,837 | INFO     | [payload] failed_post thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,902 | INFO     | [data] copytool_out thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:03,981 | INFO     | [job] queue monitor thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:05,474 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 05:34:50] 2026-03-30 03:34:30,839 | INFO     | PID=9424 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-30 05:34:50] 2026-03-30 03:34:30,839 | INFO     | .. there are 2 such processes running
[2026-03-30 05:34:50] 2026-03-30 03:34:30,839 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 05:34:50] 2026-03-30 03:34:30,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 05:34:50] 2026-03-30 03:34:30,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 05:34:50] 2026-03-30 03:34:38,766 | INFO     | [monitor] cgroup control has ended
[2026-03-30 05:34:50] 2026-03-30 03:34:39,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140670038292288)>', '<ExcThread(monitor, started 140669725153024)>']
[2026-03-30 05:34:50] 2026-03-30 03:34:39,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 05:34:50] 2026-03-30 03:34:39,893 | INFO     | [monitor] control thread has ended
[2026-03-30 05:34:50] 2026-03-30 03:34:44,414 | INFO     | all workflow threads have been joined
[2026-03-30 05:34:50] 2026-03-30 03:34:44,414 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 05:34:50] 2026-03-30 03:34:44,415 | INFO     | traces error code: 0
[2026-03-30 05:34:50] 2026-03-30 03:34:44,415 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 05:34:50] 2026-03-30 03:34:44,830 [wrapper] ==== pilot stdout END ====
[2026-03-30 05:34:50] 2026-03-30 03:34:44,942 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 05:34:50] 2026-03-30 03:34:45,006 [wrapper] pilotpid: 9424
[2026-03-30 05:34:50] 2026-03-30 03:34:45,061 [wrapper] Pilot exit status: 0
[2026-03-30 05:34:50] 2026-03-30 03:34:45,544 [wrapper] pandaids: 7066692877
[2026-03-30 05:34:50] 2026-03-30 03:34:46,541 [wrapper] cleanup supervisor_pilot 19939 9425
[2026-03-30 05:34:50] 2026-03-30 03:34:46,683 [wrapper] Test setup, not cleaning
[2026-03-30 05:34:50] 2026-03-30 03:34:46,781 [wrapper] apfmon messages muted
[2026-03-30 05:34:50] 2026-03-30 03:34:46,873 [wrapper] ==== wrapper stdout END ====
[2026-03-30 05:34:50] 2026-03-30 03:34:46,974 [wrapper] ==== wrapper stderr END ====
[2026-03-30 05:34:50]  *** Error codes and diagnostics ***
[2026-03-30 05:34:50]     "exeErrorCode": 0,
[2026-03-30 05:34:50]     "exeErrorDiag": "",
[2026-03-30 05:34:50]     "pilotErrorCode": 0,
[2026-03-30 05:34:50]     "pilotErrorDiag": "",
[2026-03-30 05:34:50]  *** Listing of results directory ***
[2026-03-30 05:34:50] total 415520
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc      5118 Mar 29 10:23 queuedata.json
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc    585013 Mar 29 10:23 pilot3.tar.gz
[2026-03-30 05:34:50] -rwx------. 1 boinc boinc     36322 Mar 29 10:23 runpilot2-wrapper.sh
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc       100 Mar 30 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 05:34:50] -rwxr-xr-x. 1 boinc boinc      7986 Mar 30 00:56 run_atlas
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc       105 Mar 30 00:56 job.xml
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc 224579038 Mar 30 00:56 EVNT.49263189._000016.pool.root.1
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc     15845 Mar 30 00:56 start_atlas.sh
[2026-03-30 05:34:50] drwxrwx--x. 2 boinc boinc        68 Mar 30 00:56 shared
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc    597529 Mar 30 00:56 input.tar.gz
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc      6391 Mar 30 00:56 init_data.xml
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc         0 Mar 30 00:56 boinc_lockfile
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc      2571 Mar 30 00:57 pandaJob.out
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc       415 Mar 30 01:03 workernode_map.json
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc   1004063 Mar 30 01:03 agis_schedconf.cvmfs.json
[2026-03-30 05:34:50] drwx------. 5 boinc boinc      4096 Mar 30 01:03 pilot3
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc 191459933 Mar 30 05:32 HITS.49263191._000392.pool.root.1
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc       531 Mar 30 05:32 boinc_task_state.xml
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc      1014 Mar 30 05:33 memory_monitor_summary.json
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc        95 Mar 30 05:33 pilot_heartbeat.json
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc   1511579 Mar 30 05:33 agis_ddmendpoints.agis.ALL.json
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc    493298 Mar 30 05:33 log.49263191._000392.job.log.tgz.1
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc      6324 Mar 30 05:33 heartbeat.json
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc      8192 Mar 30 05:34 boinc_mmap_file
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc        28 Mar 30 05:34 wrapper_checkpoint.txt
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc      5065 Mar 30 05:34 pilotlog.txt
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc   2272334 Mar 30 05:34 log.49263191._000392.job.log.1
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc       357 Mar 30 05:34 output.list
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc       620 Mar 30 05:34 runtime_log
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc   2785280 Mar 30 05:34 result.tar.gz
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc       656 Mar 30 05:34 U4NLDmtb0Q9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmuzJKDm0GjaDm.diag
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc      8816 Mar 30 05:34 runtime_log.err
[2026-03-30 05:34:50] -rw-r--r--. 1 boinc boinc     20713 Mar 30 05:34 stderr.txt
[2026-03-30 05:34:50] HITS file was successfully produced:
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc 191459933 Mar 30 05:32 shared/HITS.pool.root.1
[2026-03-30 05:34:50]  *** Contents of shared directory: ***
[2026-03-30 05:34:50] total 409612
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc 224579038 Mar 30 00:56 ATLAS.root_0
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc     15845 Mar 30 00:56 start_atlas.sh
[2026-03-30 05:34:50] -rw-r--r--. 2 boinc boinc    597529 Mar 30 00:56 input.tar.gz
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc 191459933 Mar 30 05:32 HITS.pool.root.1
[2026-03-30 05:34:50] -rw-------. 1 boinc boinc   2785280 Mar 30 05:34 result.tar.gz
05:34:51 (5411): run_atlas exited; CPU time 60453.410596
05:34:51 (5411): called boinc_finish(0)

</stderr_txt>
]]>

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