Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:37:39 (896894): wrapper (7.7.26015): starting
09:37:39 (896894): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 09:37:39] Arguments: --nthreads 4
[2026-04-01 09:37:39] Threads: 4
[2026-04-01 09:37:39] Checking for CVMFS
[2026-04-01 09:37:39] No cvmfs_config command found, will try listing directly
[2026-04-01 09:37:39] CVMFS is ok
[2026-04-01 09:37:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 09:37:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 09:37:39] Further information can be found at the LHC@home message board.
[2026-04-01 09:37:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 09:37:39] Checking for apptainer binary...
[2026-04-01 09:37:39] which: no apptainer in ((null))
[2026-04-01 09:37:39] apptainer is not installed, using version from CVMFS
[2026-04-01 09:37:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 09:37:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-04-01 09:37:39] apptainer works
[2026-04-01 09:37:39] Set ATHENA_PROC_NUMBER=4
[2026-04-01 09:37:39] Set ATHENA_CORE_NUMBER=4
[2026-04-01 09:37:39] Starting ATLAS job with PandaID=7066428772
[2026-04-01 09:37:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 13:06:21]  *** The last 200 lines of the pilot log: ***
[2026-04-01 13:06:21] 2026-04-01 11:02:35,656 | INFO     | job 7066428772 has state=finished
[2026-04-01 13:06:21] 2026-04-01 11:02:35,657 | INFO     | preparing for final server update for job 7066428772 in state='finished'
[2026-04-01 13:06:21] 2026-04-01 11:02:35,657 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/0/PanDA_Pilot-7066428772/jobReport.json
[2026-04-01 13:06:21] 2026-04-01 11:02:35,660 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/0/workernode_map.json
[2026-04-01 13:06:21] 2026-04-01 11:02:35,660 | INFO     | this job has now completed (state=finished)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,660 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,660 | INFO     | log transfer has been attempted: DONE
[2026-04-01 13:06:21] 2026-04-01 11:02:35,661 | INFO     | job 7066428772 has finished - writing final server update
[2026-04-01 13:06:21] 2026-04-01 11:02:35,661 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_125284/.job.ad'
[2026-04-01 13:06:21] 2026-04-01 11:02:35,661 | INFO     | total number of processed events: 400 (read)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,674 | INFO     | using path: /var/lib/boinc/var/slot48/slots/0/PanDA_Pilot-7066428772/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,675 | INFO     | extracted standard info from prmon json
[2026-04-01 13:06:21] 2026-04-01 11:02:35,675 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 13:06:21] 2026-04-01 11:02:35,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-01 13:06:21] 2026-04-01 11:02:35,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 13:06:21] 2026-04-01 11:02:35,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 13:06:21] 2026-04-01 11:02:35,679 | INFO     | fitting pss+swap vs Time
[2026-04-01 13:06:21] 2026-04-01 11:02:35,680 | INFO     | sum of square deviations: 2518000700.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,681 | INFO     | sum of deviations: 742956637.0000092
[2026-04-01 13:06:21] 2026-04-01 11:02:35,681 | INFO     | mean x: 1775035208.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,681 | INFO     | mean y: 2342763.4825870646
[2026-04-01 13:06:21] 2026-04-01 11:02:35,681 | INFO     | intersect: -521395847.3495274
[2026-04-01 13:06:21] 2026-04-01 11:02:35,682 | INFO     | chi2: 1.4357972547177569
[2026-04-01 13:06:21] 2026-04-01 11:02:35,682 | INFO     | sum of square deviations: 2334722845.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,683 | INFO     | sum of deviations: 754635666.4999958
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | mean x: 1775035055.5
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | mean y: 2342773.1173469387
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | intersect: -571389036.2221465
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | chi2: 1.435925328051491
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | current chi2=1.435925328051491 (change=-0.008920015225915609 %)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,684 | INFO     | right removable region: 195
[2026-04-01 13:06:21] 2026-04-01 11:02:35,685 | INFO     | sum of square deviations: 2334722845.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,686 | INFO     | sum of deviations: -24700907693.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,686 | INFO     | mean x: 1775035360.5
[2026-04-01 13:06:21] 2026-04-01 11:02:35,686 | INFO     | mean y: 2363654.5204081633
[2026-04-01 13:06:21] 2026-04-01 11:02:35,686 | INFO     | intersect: 18781888035.934288
[2026-04-01 13:06:21] 2026-04-01 11:02:35,687 | INFO     | chi2: 0.09704596247209046
[2026-04-01 13:06:21] 2026-04-01 11:02:35,687 | INFO     | current chi2=0.09704596247209046 (change=93.24097032828166 %)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,687 | INFO     | sum of square deviations: 2160561440.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,688 | INFO     | sum of deviations: -20914716627.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | mean x: 1775035513.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | mean y: 2360333.6125654452
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | intersect: 17185100000.232075
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | chi2: 0.0930315551752193
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | current chi2=0.0930315551752193 (change=4.136604135412301 %)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,689 | INFO     | left removable region: 20
[2026-04-01 13:06:21] 2026-04-01 11:02:35,690 | INFO     | sum of square deviations: 1661798600.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,691 | INFO     | sum of deviations: -11467866653.999998
[2026-04-01 13:06:21] 2026-04-01 11:02:35,691 | INFO     | mean x: 1775035635.0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,691 | INFO     | mean y: 2351972.931428571
[2026-04-01 13:06:21] 2026-04-01 11:02:35,691 | INFO     | intersect: 12251653403.488785
[2026-04-01 13:06:21] 2026-04-01 11:02:35,691 | INFO     | chi2: 0.0698881927965693
[2026-04-01 13:06:21] 2026-04-01 11:02:35,692 | INFO     | current memory leak: -6.90 B/s (using 175 data points, chi2=0.07)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,692 | INFO     | could have reported an average CPU frequency of 2558 MHz (10 samples)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,692 | INFO     | ..............................
[2026-04-01 13:06:21] 2026-04-01 11:02:35,692 | INFO     | . Timing measurements:
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . get job = 0 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . initial setup = 6 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . payload setup = 11 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . stage-in = 0 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . payload execution = 12245 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . stage-out = 0 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | . log creation = 0 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,693 | INFO     | ..............................
[2026-04-01 13:06:21] 2026-04-01 11:02:35,791 | INFO     | 
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | job summary report
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | --------------------------------------------------
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | PanDA job id: 7066428772
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | task id: 49263208
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | errors: (none)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | pilot state: finished 
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | transexitcode: 0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | exeerrorcode: 0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | exeerrordiag: 
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | exitcode: 0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,792 | INFO     | exitmsg: OK
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | cpuconsumptiontime: 45321 s
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | nevents: 400
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | neventsw: 0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | pid: 905686
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | pgrp: 905686
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | corecount: 4
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | event service: False
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | sizes: {0: 2280045, 1: 2280251, 11: 2280279, 12260: 2310146, 12262: 2319166, 12263: 2319222, 12266: 2319544}
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | --------------------------------------------------
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | 
[2026-04-01 13:06:21] 2026-04-01 11:02:35,793 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/0
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,818 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 13:06:21] 2026-04-01 11:02:35,818 | INFO     | job 7066428772 has completed (purged errors)
[2026-04-01 13:06:21] 2026-04-01 11:02:35,818 | INFO     | overall cleanup function is called
[2026-04-01 13:06:21] 2026-04-01 11:02:36,825 | INFO     | --- collectZombieJob: --- 10, [905686]
[2026-04-01 13:06:21] 2026-04-01 11:02:36,826 | INFO     | zombie collector waiting for pid 905686
[2026-04-01 13:06:21] 2026-04-01 11:02:36,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 13:06:21] 2026-04-01 11:02:36,826 | INFO     | collected zombie processes
[2026-04-01 13:06:21] 2026-04-01 11:02:36,826 | INFO     | will attempt to kill all subprocesses of pid=905686
[2026-04-01 13:06:21] 2026-04-01 11:02:37,173 | INFO     | process IDs to be killed: [905686] (in reverse order)
[2026-04-01 13:06:21] 2026-04-01 11:02:37,291 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 13:06:21] 2026-04-01 11:02:37,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 13:06:21] 2026-04-01 11:02:37,303 | INFO     | did not find any defunct processes belonging to 905686
[2026-04-01 13:06:21] 2026-04-01 11:02:37,315 | INFO     | did not find any defunct processes belonging to 905686
[2026-04-01 13:06:21] 2026-04-01 11:02:37,315 | INFO     | ready for new job
[2026-04-01 13:06:21] 2026-04-01 11:02:37,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 13:06:21] 2026-04-01 11:02:37,318 | INFO     | **************************************
[2026-04-01 13:06:21] 2026-04-01 11:02:37,318 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 13:06:21] 2026-04-01 11:02:37,318 | INFO     | **************************************
[2026-04-01 13:06:21] 2026-04-01 11:02:37,318 | INFO     | 
[2026-04-01 13:06:21] 2026-04-01 11:02:37,322 | INFO     | architecture information:
[2026-04-01 13:06:21] 2026-04-01 11:02:37,322 | INFO     | executing command: cat /etc/os-release
[2026-04-01 13:06:21] 2026-04-01 11:02:37,336 | INFO     | cat /etc/os-release:
[2026-04-01 13:06:21] NAME="CentOS Linux"
[2026-04-01 13:06:21] VERSION="7 (Core)"
[2026-04-01 13:06:21] ID="centos"
[2026-04-01 13:06:21] ID_LIKE="rhel fedora"
[2026-04-01 13:06:21] VERSION_ID="7"
[2026-04-01 13:06:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 13:06:21] ANSI_COLOR="0;31"
[2026-04-01 13:06:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 13:06:21] HOME_URL="https://www.centos.org/"
[2026-04-01 13:06:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 13:06:21] 
[2026-04-01 13:06:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 13:06:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 13:06:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 13:06:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 13:06:21] 
[2026-04-01 13:06:21] 2026-04-01 11:02:37,336 | INFO     | **************************************
[2026-04-01 13:06:21] 2026-04-01 11:02:37,839 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/0
[2026-04-01 13:06:21] 2026-04-01 11:02:37,856 | INFO     | sufficient remaining disk space (41447063552 B)
[2026-04-01 13:06:21] 2026-04-01 11:02:37,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 13:06:21] 2026-04-01 11:02:37,857 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 13:06:21] 2026-04-01 11:02:37,857 | INFO     | update_server=False
[2026-04-01 13:06:21] 2026-04-01 11:02:37,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 13:06:21] 2026-04-01 11:02:37,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 13:06:21] 2026-04-01 11:02:38,012 | INFO     | all data control threads have been joined
[2026-04-01 13:06:21] 2026-04-01 11:02:38,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:06:21] 2026-04-01 11:02:38,099 | INFO     | aborting loop
[2026-04-01 13:06:21] 2026-04-01 11:02:38,605 | INFO     | all job control threads have been joined
[2026-04-01 13:06:21] 2026-04-01 11:02:38,863 | INFO     | [job] retrieve thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:38,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 13:06:21] 2026-04-01 11:02:38,997 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,018 | INFO     | [data] control thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,105 | INFO     | [job] job monitor thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,237 | INFO     | all payload control threads have been joined
[2026-04-01 13:06:21] 2026-04-01 11:02:39,394 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,581 | INFO     | [payload] validate_post thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,610 | INFO     | [job] control thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:39,863 | INFO     | [data] copytool_out thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,077 | INFO     | [job] validate thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,111 | INFO     | [payload] failed_post thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,157 | INFO     | [data] copytool_in thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,191 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,243 | INFO     | [payload] control thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:40,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:06:21] 2026-04-01 11:02:41,806 | INFO     | [job] queue monitor thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:42,954 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:02:48,760 | INFO     | job.realtimelogging is not enabled
[2026-04-01 13:06:21] 2026-04-01 11:02:49,761 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 13:06:21] 2026-04-01 11:03:08,444 | INFO     | PID=900677 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-01 13:06:21] 2026-04-01 11:03:08,445 | INFO     | .. there are 10 such processes running
[2026-04-01 13:06:21] 2026-04-01 11:03:08,445 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 13:06:21] 2026-04-01 11:03:08,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 13:06:21] 2026-04-01 11:03:08,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 13:06:21] 2026-04-01 11:03:18,605 | INFO     | [monitor] cgroup control has ended
[2026-04-01 13:06:21] 2026-04-01 11:03:18,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23362626434880)>', '<ExcThread(monitor, started 23362387851008)>']
[2026-04-01 13:06:21] 2026-04-01 11:03:19,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 13:06:21] 2026-04-01 11:03:19,498 | INFO     | [monitor] control thread has ended
[2026-04-01 13:06:21] 2026-04-01 11:03:23,884 | INFO     | all workflow threads have been joined
[2026-04-01 13:06:21] 2026-04-01 11:03:23,884 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 13:06:21] 2026-04-01 11:03:23,884 | INFO     | traces error code: 0
[2026-04-01 13:06:21] 2026-04-01 11:03:23,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 13:06:21] 2026-04-01 11:03:24,006 [wrapper] ==== pilot stdout END ====
[2026-04-01 13:06:21] 2026-04-01 11:03:24,009 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 13:06:21] 2026-04-01 11:03:24,012 [wrapper] pilotpid: 900677
[2026-04-01 13:06:21] 2026-04-01 11:03:24,014 [wrapper] Pilot exit status: 0
[2026-04-01 13:06:21] 2026-04-01 11:03:24,025 [wrapper] pandaids: 7066428772
[2026-04-01 13:06:21] 2026-04-01 11:03:24,108 [wrapper] cleanup supervisor_pilot 1065748 900678
[2026-04-01 13:06:21] 2026-04-01 11:03:24,111 [wrapper] Test setup, not cleaning
[2026-04-01 13:06:21] 2026-04-01 11:03:24,114 [wrapper] apfmon messages muted
[2026-04-01 13:06:21] 2026-04-01 11:03:24,116 [wrapper] ==== wrapper stdout END ====
[2026-04-01 13:06:21] 2026-04-01 11:03:24,118 [wrapper] ==== wrapper stderr END ====
[2026-04-01 13:06:21]  *** Error codes and diagnostics ***
[2026-04-01 13:06:21]     "exeErrorCode": 0,
[2026-04-01 13:06:21]     "exeErrorDiag": "",
[2026-04-01 13:06:21]     "pilotErrorCode": 0,
[2026-04-01 13:06:21]     "pilotErrorDiag": "",
[2026-04-01 13:06:21]  *** Listing of results directory ***
[2026-04-01 13:06:21] total 424048
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc    585013 Mar 29 08:38 pilot3.tar.gz
[2026-04-01 13:06:21] -rwx------. 1 boinc boinc     36322 Mar 29 08:38 runpilot2-wrapper.sh
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc      5118 Mar 29 08:40 queuedata.json
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc       100 Apr  1 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 13:06:21] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 09:37 run_atlas
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc       105 Apr  1 09:37 job.xml
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc      6563 Apr  1 09:37 init_data.xml
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc 222471084 Apr  1 09:37 EVNT.49263206._000017.pool.root.1
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc     15845 Apr  1 09:37 start_atlas.sh
[2026-04-01 13:06:21] drwxrwx--x. 2 boinc boinc      4096 Apr  1 09:37 shared
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc    597523 Apr  1 09:37 input.tar.gz
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc         0 Apr  1 09:37 boinc_lockfile
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc      2569 Apr  1 09:37 pandaJob.out
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc   1004631 Apr  1 09:37 agis_schedconf.cvmfs.json
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc       452 Apr  1 09:37 workernode_map.json
[2026-04-01 13:06:21] drwx------. 5 boinc boinc      4096 Apr  1 09:37 pilot3
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc 203635041 Apr  1 13:01 HITS.49263208._000853.pool.root.1
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc       529 Apr  1 13:02 boinc_task_state.xml
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc      1029 Apr  1 13:02 memory_monitor_summary.json
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc   1511579 Apr  1 13:02 agis_ddmendpoints.agis.ALL.json
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc    361256 Apr  1 13:02 log.49263208._000853.job.log.tgz.1
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc      6397 Apr  1 13:02 heartbeat.json
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc        95 Apr  1 13:03 pilot_heartbeat.json
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc      4900 Apr  1 13:03 pilotlog.txt
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc   1726572 Apr  1 13:03 log.49263208._000853.job.log.1
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc       357 Apr  1 13:03 output.list
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc       620 Apr  1 13:03 runtime_log
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc   2109440 Apr  1 13:03 result.tar.gz
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc      9205 Apr  1 13:03 runtime_log.err
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc       665 Apr  1 13:03 CbhLDmdyyQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmDFMKDmrbyvvn.diag
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc        27 Apr  1 13:05 wrapper_checkpoint.txt
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc      8192 Apr  1 13:06 boinc_mmap_file
[2026-04-01 13:06:21] -rw-r--r--. 1 boinc boinc     21097 Apr  1 13:06 stderr.txt
[2026-04-01 13:06:21] HITS file was successfully produced:
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc 203635041 Apr  1 13:01 shared/HITS.pool.root.1
[2026-04-01 13:06:21]  *** Contents of shared directory: ***
[2026-04-01 13:06:21] total 418792
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc 222471084 Apr  1 09:37 ATLAS.root_0
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc     15845 Apr  1 09:37 start_atlas.sh
[2026-04-01 13:06:21] -rw-r--r--. 2 boinc boinc    597523 Apr  1 09:37 input.tar.gz
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc 203635041 Apr  1 13:01 HITS.pool.root.1
[2026-04-01 13:06:21] -rw-------. 1 boinc boinc   2109440 Apr  1 13:03 result.tar.gz
13:06:23 (896894): run_atlas exited; CPU time 45821.138780
13:06:23 (896894): called boinc_finish(0)

</stderr_txt>
]]>

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