Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:13:40 (316518): wrapper (7.7.26015): starting
04:13:40 (316518): wrapper: running run_atlas (--nthreads 8)
[2026-03-29 04:13:40] Arguments: --nthreads 8
[2026-03-29 04:13:40] Threads: 8
[2026-03-29 04:13:40] Checking for CVMFS
[2026-03-29 04:13:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 04:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 04:13:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 04:13:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 04:13:42] 2.13.3.0 6683 127494 371356 157834 3 771 40347962 40960000 22583 16776704 0 275570014 99.599 292406598 34140 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-29 04:13:42] CVMFS is ok
[2026-03-29 04:13:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 04:13:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 04:13:42] Further information can be found at the LHC@home message board.
[2026-03-29 04:13:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 04:13:42] Checking for apptainer binary...
[2026-03-29 04:13:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 04:13:42] Running /usr/bin/apptainer --version
[2026-03-29 04:13:42] apptainer version 1.4.5-2.el9
[2026-03-29 04:13:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 04:13:43] c-211-35-3.aglt2.org
[2026-03-29 04:13:43] apptainer works
[2026-03-29 04:13:43] Set ATHENA_PROC_NUMBER=8
[2026-03-29 04:13:43] Set ATHENA_CORE_NUMBER=8
[2026-03-29 04:13:43] Starting ATLAS job with PandaID=7071836771
[2026-03-29 04:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 15:49:38]  *** The last 200 lines of the pilot log: ***
[2026-03-29 15:49:38] 2026-03-29 19:48:47,643 | INFO     | preparing for final server update for job 7071836771 in state='finished'
[2026-03-29 15:49:38] 2026-03-29 19:48:47,643 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7071836771/jobReport.json
[2026-03-29 15:49:38] 2026-03-29 19:48:47,645 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-29 15:49:38] 2026-03-29 19:48:47,646 | INFO     | this job has now completed (state=finished)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,646 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,646 | INFO     | log transfer has been attempted: DONE
[2026-03-29 15:49:38] 2026-03-29 19:48:47,646 | INFO     | job 7071836771 has finished - writing final server update
[2026-03-29 15:49:38] 2026-03-29 19:48:47,646 | INFO     | total number of processed events: 400 (read)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,661 | INFO     | time since job start (41611s) is within the limit (345600.0s)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,668 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7071836771/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,668 | INFO     | extracted standard info from prmon json
[2026-03-29 15:49:38] 2026-03-29 19:48:47,668 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 15:49:38] 2026-03-29 19:48:47,669 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 15:49:38] 2026-03-29 19:48:47,669 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 15:49:38] 2026-03-29 19:48:47,669 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 15:49:38] 2026-03-29 19:48:47,680 | INFO     | fitting pss+swap vs Time
[2026-03-29 15:49:38] 2026-03-29 19:48:47,681 | INFO     | sum of square deviations: 97930617916.02057
[2026-03-29 15:49:38] 2026-03-29 19:48:47,691 | INFO     | sum of deviations: 227371850149.0485
[2026-03-29 15:49:38] 2026-03-29 19:48:47,691 | INFO     | mean x: 1774792953.1483114
[2026-03-29 15:49:38] 2026-03-29 19:48:47,692 | INFO     | mean y: 2521146.563876652
[2026-03-29 15:49:38] 2026-03-29 19:48:47,692 | INFO     | intersect: -4118130453.274644
[2026-03-29 15:49:38] 2026-03-29 19:48:47,693 | INFO     | chi2: 3.907151118602248
[2026-03-29 15:49:38] 2026-03-29 19:48:47,694 | INFO     | sum of square deviations: 95789380665.91008
[2026-03-29 15:49:38] 2026-03-29 19:48:47,703 | INFO     | sum of deviations: 272399644823.53156
[2026-03-29 15:49:38] 2026-03-29 19:48:47,703 | INFO     | mean x: 1774792800.6494083
[2026-03-29 15:49:38] 2026-03-29 19:48:47,703 | INFO     | mean y: 2524333.7026627217
[2026-03-29 15:49:38] 2026-03-29 19:48:47,704 | INFO     | intersect: -5044516634.423285
[2026-03-29 15:49:38] 2026-03-29 19:48:47,704 | INFO     | chi2: 3.109858338593262
[2026-03-29 15:49:38] 2026-03-29 19:48:47,705 | INFO     | current chi2=3.109858338593262 (change=20.40598778514129 %)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,705 | INFO     | right removable region: 675
[2026-03-29 15:49:38] 2026-03-29 19:48:47,706 | INFO     | sum of square deviations: 95789360352.20718
[2026-03-29 15:49:38] 2026-03-29 19:48:47,715 | INFO     | sum of deviations: 36395206124.937874
[2026-03-29 15:49:38] 2026-03-29 19:48:47,715 | INFO     | mean x: 1774793105.647929
[2026-03-29 15:49:38] 2026-03-29 19:48:47,716 | INFO     | mean y: 2534734.2056213017
[2026-03-29 15:49:38] 2026-03-29 19:48:47,716 | INFO     | intersect: -671798622.5645875
[2026-03-29 15:49:38] 2026-03-29 19:48:47,717 | INFO     | chi2: 1.054693257755508
[2026-03-29 15:49:38] 2026-03-29 19:48:47,717 | INFO     | current chi2=1.054693257755508 (change=73.00607973072677 %)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,717 | INFO     | sum of square deviations: 93679504247.09688
[2026-03-29 15:49:38] 2026-03-29 19:48:47,727 | INFO     | sum of deviations: -8863460763.128174
[2026-03-29 15:49:38] 2026-03-29 19:48:47,727 | INFO     | mean x: 1774793258.1490314
[2026-03-29 15:49:38] 2026-03-29 19:48:47,727 | INFO     | mean y: 2538000.341281669
[2026-03-29 15:49:38] 2026-03-29 19:48:47,727 | INFO     | intersect: 170459580.76270935
[2026-03-29 15:49:38] 2026-03-29 19:48:47,728 | INFO     | chi2: 0.8814525816928453
[2026-03-29 15:49:38] 2026-03-29 19:48:47,728 | INFO     | current chi2=0.8814525816928453 (change=16.425692948045953 %)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,728 | INFO     | left removable region: 20
[2026-03-29 15:49:38] 2026-03-29 19:48:47,729 | INFO     | sum of square deviations: 87136785029.92964
[2026-03-29 15:49:38] 2026-03-29 19:48:47,743 | INFO     | sum of deviations: 22362510853.908413
[2026-03-29 15:49:38] 2026-03-29 19:48:47,743 | INFO     | mean x: 1774793380.146565
[2026-03-29 15:49:38] 2026-03-29 19:48:47,743 | INFO     | mean y: 2542476.6259541987
[2026-03-29 15:49:38] 2026-03-29 19:48:47,743 | INFO     | intersect: -452934922.6531227
[2026-03-29 15:49:38] 2026-03-29 19:48:47,744 | INFO     | chi2: 0.051147533258524884
[2026-03-29 15:49:38] 2026-03-29 19:48:47,744 | INFO     | current memory leak: 0.26 B/s (using 655 data points, chi2=0.05)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,745 | INFO     | could have reported an average CPU frequency of 2725 MHz (27 samples)
[2026-03-29 15:49:38] 2026-03-29 19:48:47,745 | INFO     | ..............................
[2026-03-29 15:49:38] 2026-03-29 19:48:47,745 | INFO     | . Timing measurements:
[2026-03-29 15:49:38] 2026-03-29 19:48:47,745 | INFO     | . get job = 0 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,745 | INFO     | . initial setup = 34 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | . payload setup = 54 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | . stage-in = 0 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | . payload execution = 41522 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | . stage-out = 7 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | . log creation = 1 s
[2026-03-29 15:49:38] 2026-03-29 19:48:47,746 | INFO     | ..............................
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | 
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | job summary report
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | --------------------------------------------------
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | PanDA job id: 7071836771
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | task id: 49176745
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | errors: (none)
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 15:49:38] 2026-03-29 19:48:48,016 | INFO     | pilot state: finished 
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | transexitcode: 0
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | exeerrorcode: 0
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | exeerrordiag: 
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | exitcode: 0
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | exitmsg: OK
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | cpuconsumptiontime: 105339 s
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | nevents: 400
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | neventsw: 0
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | pid: 326540
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | pgrp: 326540
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | corecount: 8
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | event service: False
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | sizes: {0: 2279817, 1: 2279901, 2: 2279901, 3: 2260261, 4: 2280390, 15: 2280418, 41583: 2323636, 41584: 2323635, 41592: 2332883, 41595: 2332939, 41596: 2332963}
[2026-03-29 15:49:38] 2026-03-29 19:48:48,017 | INFO     | --------------------------------------------------
[2026-03-29 15:49:38] 2026-03-29 19:48:48,018 | INFO     | 
[2026-03-29 15:49:38] 2026-03-29 19:48:48,018 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 15:49:38] 2026-03-29 19:48:48,180 | INFO     | job 7071836771 has completed (purged errors)
[2026-03-29 15:49:38] 2026-03-29 19:48:48,181 | INFO     | overall cleanup function is called
[2026-03-29 15:49:38] 2026-03-29 19:48:49,207 | INFO     | --- collectZombieJob: --- 10, [326540]
[2026-03-29 15:49:38] 2026-03-29 19:48:49,207 | INFO     | zombie collector waiting for pid 326540
[2026-03-29 15:49:38] 2026-03-29 19:48:49,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 15:49:38] 2026-03-29 19:48:49,207 | INFO     | collected zombie processes
[2026-03-29 15:49:38] 2026-03-29 19:48:49,207 | INFO     | will attempt to kill all subprocesses of pid=326540
[2026-03-29 15:49:38] 2026-03-29 19:48:51,633 | INFO     | PID=320922 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 15:49:38] 2026-03-29 19:48:51,633 | INFO     | .. there are 24 such processes running
[2026-03-29 15:49:38] 2026-03-29 19:48:52,087 | INFO     | process IDs to be killed: [326540] (in reverse order)
[2026-03-29 15:49:38] 2026-03-29 19:48:53,083 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 15:49:38] 2026-03-29 19:48:53,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 15:49:38] 2026-03-29 19:48:53,171 | INFO     | did not find any defunct processes belonging to 326540
[2026-03-29 15:49:38] 2026-03-29 19:48:53,285 | INFO     | did not find any defunct processes belonging to 326540
[2026-03-29 15:49:38] 2026-03-29 19:48:53,285 | INFO     | ready for new job
[2026-03-29 15:49:38] 2026-03-29 19:48:53,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 15:49:38] 2026-03-29 19:48:53,309 | INFO     | **************************************
[2026-03-29 15:49:38] 2026-03-29 19:48:53,309 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 15:49:38] 2026-03-29 19:48:53,309 | INFO     | **************************************
[2026-03-29 15:49:38] 2026-03-29 19:48:53,309 | INFO     | 
[2026-03-29 15:49:38] 2026-03-29 19:48:53,363 | INFO     | architecture information:
[2026-03-29 15:49:38] 2026-03-29 19:48:53,370 | INFO     | executing command: cat /etc/os-release
[2026-03-29 15:49:38] 2026-03-29 19:48:53,465 | INFO     | cat /etc/os-release:
[2026-03-29 15:49:38] NAME="CentOS Linux"
[2026-03-29 15:49:38] VERSION="7 (Core)"
[2026-03-29 15:49:38] ID="centos"
[2026-03-29 15:49:38] ID_LIKE="rhel fedora"
[2026-03-29 15:49:38] VERSION_ID="7"
[2026-03-29 15:49:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 15:49:38] ANSI_COLOR="0;31"
[2026-03-29 15:49:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 15:49:38] HOME_URL="https://www.centos.org/"
[2026-03-29 15:49:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 15:49:38] 
[2026-03-29 15:49:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 15:49:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 15:49:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 15:49:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 15:49:38] 
[2026-03-29 15:49:38] 2026-03-29 19:48:53,465 | INFO     | **************************************
[2026-03-29 15:49:38] 2026-03-29 19:48:53,969 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-29 15:49:38] 2026-03-29 19:48:54,077 | INFO     | sufficient remaining disk space (127433441280 B)
[2026-03-29 15:49:38] 2026-03-29 19:48:54,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 15:49:38] 2026-03-29 19:48:54,077 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 15:49:38] 2026-03-29 19:48:54,077 | INFO     | update_server=False
[2026-03-29 15:49:38] 2026-03-29 19:48:54,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 15:49:38] 2026-03-29 19:48:54,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 15:49:38] 2026-03-29 19:48:54,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 15:49:38] 2026-03-29 19:48:54,726 | INFO     | aborting loop
[2026-03-29 15:49:38] 2026-03-29 19:48:54,823 | INFO     | all data control threads have been joined
[2026-03-29 15:49:38] 2026-03-29 19:48:55,025 | INFO     | all payload control threads have been joined
[2026-03-29 15:49:38] 2026-03-29 19:48:55,074 | INFO     | all job control threads have been joined
[2026-03-29 15:49:38] 2026-03-29 19:48:55,091 | INFO     | [job] retrieve thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:55,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:55,198 | INFO     | [job] validate thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:55,201 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:55,732 | INFO     | [job] job monitor thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:55,837 | INFO     | [data] control thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,032 | INFO     | [payload] control thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,087 | INFO     | [job] control thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,135 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,138 | INFO     | [data] copytool_in thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,142 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,153 | INFO     | [payload] failed_post thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,275 | INFO     | [payload] validate_post thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,345 | INFO     | [data] copytool_out thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:48:56,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 15:49:38] 2026-03-29 19:48:57,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 15:49:38] 2026-03-29 19:48:58,086 | INFO     | [job] queue monitor thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:49:00,939 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 15:49:38] 2026-03-29 19:49:27,623 | INFO     | PID=320922 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-29 15:49:38] 2026-03-29 19:49:27,623 | INFO     | .. there are 24 such processes running
[2026-03-29 15:49:38] 2026-03-29 19:49:27,623 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 15:49:38] 2026-03-29 19:49:27,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 15:49:38] 2026-03-29 19:49:27,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 15:49:38] 2026-03-29 19:49:29,813 | INFO     | [monitor] cgroup control has ended
[2026-03-29 15:49:38] 2026-03-29 19:49:31,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140247206827840)>', '<ExcThread(monitor, started 140246830270208)>']
[2026-03-29 15:49:38] 2026-03-29 19:49:31,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 15:49:38] 2026-03-29 19:49:31,669 | INFO     | [monitor] control thread has ended
[2026-03-29 15:49:38] 2026-03-29 19:49:36,336 | INFO     | all workflow threads have been joined
[2026-03-29 15:49:38] 2026-03-29 19:49:36,336 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 15:49:38] 2026-03-29 19:49:36,336 | INFO     | traces error code: 0
[2026-03-29 15:49:38] 2026-03-29 19:49:36,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 15:49:38] 2026-03-29 19:49:36,869 [wrapper] ==== pilot stdout END ====
[2026-03-29 15:49:38] 2026-03-29 19:49:36,871 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 15:49:38] 2026-03-29 19:49:36,873 [wrapper] pilotpid: 320922
[2026-03-29 15:49:38] 2026-03-29 19:49:36,904 [wrapper] Pilot exit status: 0
[2026-03-29 15:49:38] 2026-03-29 19:49:36,996 [wrapper] pandaids: 7071836771
[2026-03-29 15:49:38] 2026-03-29 19:49:37,461 [wrapper] cleanup supervisor_pilot 2028610 320923
[2026-03-29 15:49:38] 2026-03-29 19:49:37,492 [wrapper] Test setup, not cleaning
[2026-03-29 15:49:38] 2026-03-29 19:49:37,515 [wrapper] apfmon messages muted
[2026-03-29 15:49:38] 2026-03-29 19:49:37,542 [wrapper] ==== wrapper stdout END ====
[2026-03-29 15:49:38] 2026-03-29 19:49:37,572 [wrapper] ==== wrapper stderr END ====
[2026-03-29 15:49:38]  *** Error codes and diagnostics ***
[2026-03-29 15:49:38]     "exeErrorCode": 0,
[2026-03-29 15:49:38]     "exeErrorDiag": "",
[2026-03-29 15:49:38]     "pilotErrorCode": 0,
[2026-03-29 15:49:38]     "pilotErrorDiag": "",
[2026-03-29 15:49:38]  *** Listing of results directory ***
[2026-03-29 15:49:38] total 475760
[2026-03-29 15:49:38] -rwx------. 1 boincer umatlas     36322 Mar 27 21:12 runpilot2-wrapper.sh
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas    585013 Mar 27 21:55 pilot3.tar.gz
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas      5118 Mar 27 22:10 queuedata.json
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas       100 Mar 29 04:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 15:49:38] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 29 04:13 run_atlas
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas       105 Mar 29 04:13 job.xml
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas 238073720 Mar 29 04:13 EVNT.49135079._000004.pool.root.1
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 04:13 start_atlas.sh
[2026-03-29 15:49:38] drwxrwx--x. 2 boincer umatlas      4096 Mar 29 04:13 shared
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas    597554 Mar 29 04:13 input.tar.gz
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas         0 Mar 29 04:13 boinc_lockfile
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas      2613 Mar 29 04:13 pandaJob.out
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas        57 Mar 29 04:13 setup.sh.local
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas   1003389 Mar 29 04:14 agis_schedconf.cvmfs.json
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas       444 Mar 29 04:15 workernode_map.json
[2026-03-29 15:49:38] drwx------. 5 boincer umatlas      4096 Mar 29 04:15 pilot3
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas      6861 Mar 29 15:38 init_data.xml
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas 233122434 Mar 29 15:47 HITS.49176745._000303.pool.root.1
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas       531 Mar 29 15:47 boinc_task_state.xml
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas      1045 Mar 29 15:48 memory_monitor_summary.json
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas        95 Mar 29 15:48 pilot_heartbeat.json
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas   1511579 Mar 29 15:48 agis_ddmendpoints.agis.ALL.json
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas    806122 Mar 29 15:48 log.49176745._000303.job.log.tgz.1
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas      6396 Mar 29 15:48 heartbeat.json
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas      8192 Mar 29 15:49 boinc_mmap_file
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas        29 Mar 29 15:49 wrapper_checkpoint.txt
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas      4820 Mar 29 15:49 pilotlog.txt
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas   5217596 Mar 29 15:49 log.49176745._000303.job.log.1
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas       357 Mar 29 15:49 output.list
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas       620 Mar 29 15:49 runtime_log
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas   6041600 Mar 29 15:49 result.tar.gz
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas      9352 Mar 29 15:49 runtime_log.err
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas       661 Mar 29 15:49 ccQLDm1OXQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmF7FKDmXcIKpn.diag
[2026-03-29 15:49:38] -rw-r--r--. 1 boincer umatlas     21422 Mar 29 15:49 stderr.txt
[2026-03-29 15:49:38] HITS file was successfully produced:
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas 233122434 Mar 29 15:47 shared/HITS.pool.root.1
[2026-03-29 15:49:38]  *** Contents of shared directory: ***
[2026-03-29 15:49:38] total 466664
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas 238073720 Mar 29 04:13 ATLAS.root_0
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas     15845 Mar 29 04:13 start_atlas.sh
[2026-03-29 15:49:38] -rw-r--r--. 2 boincer umatlas    597554 Mar 29 04:13 input.tar.gz
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas 233122434 Mar 29 15:47 HITS.pool.root.1
[2026-03-29 15:49:38] -rw-------. 1 boincer umatlas   6041600 Mar 29 15:49 result.tar.gz
15:49:39 (316518): run_atlas exited; CPU time 107263.979274
15:49:39 (316518): called boinc_finish(0)

</stderr_txt>
]]>

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