Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:40 (3390891): wrapper (7.7.26015): starting
23:01:40 (3390891): wrapper: running run_atlas (--nthreads 2)
[2026-03-29 23:01:40] Arguments: --nthreads 2
[2026-03-29 23:01:40] Threads: 2
[2026-03-29 23:01:40] Checking for CVMFS
[2026-03-29 23:01:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 23:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 23:01:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 23:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 23:01:41] 2.9.2.0 3201293 2959 56372 157854 2 50 19235671 36864000 0 130560 0 744056 99.973 109279 14996 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 23:01:41] CVMFS is ok
[2026-03-29 23:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 23:01:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 23:01:41] Further information can be found at the LHC@home message board.
[2026-03-29 23:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 23:01:41] Checking for apptainer binary...
[2026-03-29 23:01:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 23:01:41] Running /usr/bin/apptainer --version
[2026-03-29 23:01:41] apptainer version 1.4.1-1.1
[2026-03-29 23:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 23:01:41] magicA244
[2026-03-29 23:01:41] apptainer works
[2026-03-29 23:01:41] Set ATHENA_PROC_NUMBER=2
[2026-03-29 23:01:41] Set ATHENA_CORE_NUMBER=2
[2026-03-29 23:01:41] Starting ATLAS job with PandaID=7071867185
[2026-03-29 23:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-30 01:02:17]  *** The last 200 lines of the pilot log: ***
[2026-03-30 01:02:17] 2026-03-29 23:01:30,099 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-30 01:02:17] 2026-03-29 23:01:30,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-30 01:02:17] 2026-03-29 23:01:30,099 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-30 01:02:17] 2026-03-29 23:01:30,100 | INFO     | job 7071867185 has completed (purged errors)
[2026-03-30 01:02:17] 2026-03-29 23:01:30,100 | INFO     | overall cleanup function is called
[2026-03-30 01:02:17] 2026-03-29 23:01:31,106 | INFO     | --- collectZombieJob: --- 10, [3399331]
[2026-03-30 01:02:17] 2026-03-29 23:01:31,106 | INFO     | zombie collector waiting for pid 3399331
[2026-03-30 01:02:17] 2026-03-29 23:01:31,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-30 01:02:17] 2026-03-29 23:01:31,106 | INFO     | collected zombie processes
[2026-03-30 01:02:17] 2026-03-29 23:01:31,106 | INFO     | will attempt to kill all subprocesses of pid=3399331
[2026-03-30 01:02:17] 2026-03-29 23:01:31,136 | INFO     | process IDs to be killed: [3399331] (in reverse order)
[2026-03-30 01:02:17] 2026-03-29 23:01:31,157 | WARNING  | found no corresponding commands to process id(s)
[2026-03-30 01:02:17] 2026-03-29 23:01:31,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-30 01:02:17] 2026-03-29 23:01:31,158 | INFO     | did not find any defunct processes belonging to 3399331
[2026-03-30 01:02:17] 2026-03-29 23:01:31,158 | INFO     | did not find any defunct processes belonging to 3399331
[2026-03-30 01:02:17] 2026-03-29 23:01:31,158 | INFO     | ready for new job
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | **************************************
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | **************************************
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | 
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | architecture information:
[2026-03-30 01:02:17] 2026-03-29 23:01:31,159 | INFO     | executing command: cat /etc/os-release
[2026-03-30 01:02:17] 2026-03-29 23:01:31,169 | INFO     | cat /etc/os-release:
[2026-03-30 01:02:17] NAME="CentOS Linux"
[2026-03-30 01:02:17] VERSION="7 (Core)"
[2026-03-30 01:02:17] ID="centos"
[2026-03-30 01:02:17] ID_LIKE="rhel fedora"
[2026-03-30 01:02:17] VERSION_ID="7"
[2026-03-30 01:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-30 01:02:17] ANSI_COLOR="0;31"
[2026-03-30 01:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-30 01:02:17] HOME_URL="https://www.centos.org/"
[2026-03-30 01:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-30 01:02:17] 
[2026-03-30 01:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-30 01:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-30 01:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-30 01:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-30 01:02:17] 
[2026-03-30 01:02:17] 2026-03-29 23:01:31,169 | INFO     | **************************************
[2026-03-30 01:02:17] 2026-03-29 23:01:31,671 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | INFO     | sufficient remaining disk space (504779243520 B)
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | INFO     | current server update state: UPDATING_FINAL
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | INFO     | update_server=False
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-30 01:02:17] 2026-03-29 23:01:31,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-30 01:02:17] 2026-03-29 23:01:31,755 | INFO     | all data control threads have been joined
[2026-03-30 01:02:17] 2026-03-29 23:01:31,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-30 01:02:17] 2026-03-29 23:01:31,841 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-30 01:02:17] 2026-03-29 23:01:31,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-30 01:02:17] 2026-03-29 23:01:31,842 | INFO     | will abort loop
[2026-03-30 01:02:17] 2026-03-29 23:01:32,686 | INFO     | [job] retrieve thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,690 | INFO     | [job] queue monitor thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,732 | INFO     | [job] create_data_payload thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,737 | INFO     | [payload] validate_post thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,761 | INFO     | [data] control thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,762 | INFO     | all payload control threads have been joined
[2026-03-30 01:02:17] 2026-03-29 23:01:32,762 | INFO     | [job] validate thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,764 | INFO     | all job control threads have been joined
[2026-03-30 01:02:17] 2026-03-29 23:01:32,773 | INFO     | [data] copytool_in thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,810 | INFO     | [payload] validate_pre thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,847 | INFO     | [job] job monitor thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:32,906 | INFO     | [payload] failed_post thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:33,691 | INFO     | [data] copytool_out thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:33,719 | INFO     | [payload] execute_payloads thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:33,768 | INFO     | [payload] control thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:33,769 | INFO     | [job] control thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:33,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-30 01:02:17] 2026-03-29 23:01:37,817 | INFO     | [data] queue_monitor thread has finished
[2026-03-30 01:02:17] 2026-03-29 23:01:54,760 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-03-30 01:02:17] 2026-03-29 23:02:02,073 | INFO     | PID=3394920 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-30 01:02:17] 2026-03-29 23:02:02,073 | INFO     | found 0 job(s) in 20 queues
[2026-03-30 01:02:17] 2026-03-29 23:02:02,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-30 01:02:17] 2026-03-29 23:02:02,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-30 01:02:17] 2026-03-29 23:02:10,347 | INFO     | [monitor] cgroup control has ended
[2026-03-30 01:02:17] 2026-03-29 23:02:11,875 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601955571520)>', '<ExcThread(monitor, started 140601148286720)>']
[2026-03-30 01:02:17] 2026-03-29 23:02:12,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-30 01:02:17] 2026-03-29 23:02:12,127 | INFO     | [monitor] control thread has ended
[2026-03-30 01:02:17] 2026-03-29 23:02:16,901 | INFO     | all workflow threads have been joined
[2026-03-30 01:02:17] 2026-03-29 23:02:16,901 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-30 01:02:17] 2026-03-29 23:02:16,902 | INFO     | traces error code: 0
[2026-03-30 01:02:17] 2026-03-29 23:02:16,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-30 01:02:17] 2026-03-29 23:02:16,945 [wrapper] ==== pilot stdout END ====
[2026-03-30 01:02:17] 2026-03-29 23:02:16,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-30 01:02:17] 2026-03-29 23:02:16,950 [wrapper] pilotpid: 3394920
[2026-03-30 01:02:17] 2026-03-29 23:02:16,952 [wrapper] Pilot exit status: 0
[2026-03-30 01:02:17] 2026-03-29 23:02:16,960 [wrapper] pandaids: 7071867185
[2026-03-30 01:02:17] 2026-03-29 23:02:16,975 [wrapper] cleanup supervisor_pilot 3404834 3394921
[2026-03-30 01:02:17] 2026-03-29 23:02:16,977 [wrapper] Test setup, not cleaning
[2026-03-30 01:02:17] 2026-03-29 23:02:16,979 [wrapper] apfmon messages muted
[2026-03-30 01:02:17] 2026-03-29 23:02:16,981 [wrapper] ==== wrapper stdout END ====
[2026-03-30 01:02:17] 2026-03-29 23:02:16,983 [wrapper] ==== wrapper stderr END ====
[2026-03-30 01:02:17]  *** Error codes and diagnostics ***
[2026-03-30 01:02:17]     "exeErrorCode": 0,
[2026-03-30 01:02:17]     "exeErrorDiag": "",
[2026-03-30 01:02:17]     "pilotErrorCode": 0,
[2026-03-30 01:02:17]     "pilotErrorDiag": "",
[2026-03-30 01:02:17]  *** Listing of results directory ***
[2026-03-30 01:02:17] total 621036
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc    585013 Mar 29 06:04 pilot3.tar.gz
[2026-03-30 01:02:17] -rwx------ 1 boinc boinc     36322 Mar 29 06:26 runpilot2-wrapper.sh
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc      5118 Mar 29 06:30 queuedata.json
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc       100 Mar 29 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-30 01:02:17] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 23:01 run_atlas
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc       105 Mar 29 23:01 job.xml
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc 441698168 Mar 29 23:01 EVNT.46701403._001975.pool.root.1
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc    597542 Mar 29 23:01 input.tar.gz
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc     15845 Mar 29 23:01 start_atlas.sh
[2026-03-30 01:02:17] drwxrwx--x 2 boinc boinc      4096 Mar 29 23:01 shared
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc         0 Mar 29 23:01 boinc_setup_complete
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc      6208 Mar 29 23:01 init_data.xml
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc         0 Mar 29 23:01 boinc_lockfile
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc      2563 Mar 29 23:01 pandaJob.out
[2026-03-30 01:02:17] -rw------- 1 boinc boinc   1004063 Mar 29 23:01 agis_schedconf.cvmfs.json
[2026-03-30 01:02:17] -rw------- 1 boinc boinc   1511579 Mar 29 23:01 agis_ddmendpoints.agis.ALL.json
[2026-03-30 01:02:17] -rw------- 1 boinc boinc       419 Mar 29 23:02 workernode_map.json
[2026-03-30 01:02:17] drwx------ 5 boinc boinc      4096 Mar 29 23:02 pilot3
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc       530 Mar 30 01:01 boinc_task_state.xml
[2026-03-30 01:02:17] -rw------- 1 boinc boinc 187737940 Mar 30 01:01 HITS.48955010._054772.pool.root.1
[2026-03-30 01:02:17] -rw------- 1 boinc boinc      1015 Mar 30 01:01 memory_monitor_summary.json
[2026-03-30 01:02:17] -rw------- 1 boinc boinc    258518 Mar 30 01:01 log.48955010._054772.job.log.tgz.1
[2026-03-30 01:02:17] -rw------- 1 boinc boinc      6296 Mar 30 01:01 heartbeat.json
[2026-03-30 01:02:17] -rw------- 1 boinc boinc        95 Mar 30 01:02 pilot_heartbeat.json
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc      8192 Mar 30 01:02 boinc_mmap_file
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc        27 Mar 30 01:02 wrapper_checkpoint.txt
[2026-03-30 01:02:17] -rw------- 1 boinc boinc      4934 Mar 30 01:02 pilotlog.txt
[2026-03-30 01:02:17] -rw------- 1 boinc boinc   1031668 Mar 30 01:02 log.48955010._054772.job.log.1
[2026-03-30 01:02:17] -rw------- 1 boinc boinc       357 Mar 30 01:02 output.list
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc       620 Mar 30 01:02 runtime_log
[2026-03-30 01:02:17] -rw------- 1 boinc boinc   1310720 Mar 30 01:02 result.tar.gz
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc      8911 Mar 30 01:02 runtime_log.err
[2026-03-30 01:02:17] -rw------- 1 boinc boinc       660 Mar 30 01:02 OYwKDmDuwQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmi4LKDmASPmVo.diag
[2026-03-30 01:02:17] -rw-r--r-- 1 boinc boinc     11440 Mar 30 01:02 stderr.txt
[2026-03-30 01:02:17] HITS file was successfully produced:
[2026-03-30 01:02:17] -rw------- 1 boinc boinc 187737940 Mar 30 01:01 shared/HITS.pool.root.1
[2026-03-30 01:02:17]  *** Contents of shared directory: ***
[2026-03-30 01:02:17] total 616572
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc 441698168 Mar 29 23:01 ATLAS.root_0
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc    597542 Mar 29 23:01 input.tar.gz
[2026-03-30 01:02:17] -rw-r--r-- 2 boinc boinc     15845 Mar 29 23:01 start_atlas.sh
[2026-03-30 01:02:17] -rw------- 1 boinc boinc 187737940 Mar 30 01:01 HITS.pool.root.1
[2026-03-30 01:02:17] -rw------- 1 boinc boinc   1310720 Mar 30 01:02 result.tar.gz
01:02:18 (3390891): run_atlas exited; CPU time 13742.045302
01:02:18 (3390891): called boinc_finish(0)

</stderr_txt>
]]>

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