Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:53:10 (2341836): wrapper (7.7.26015): starting
16:53:10 (2341836): wrapper: running run_atlas (--nthreads 4)
[2026-03-29 16:53:10] Arguments: --nthreads 4
[2026-03-29 16:53:10] Threads: 4
[2026-03-29 16:53:10] Checking for CVMFS
[2026-03-29 16:53:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 16:53:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 16:53:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 16:53:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 16:53:11] 2.9.2.0 2056898 2300 84844 157845 1 50 29196112 36864001 0 130560 0 1001714 99.984 86206 14693 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 16:53:11] CVMFS is ok
[2026-03-29 16:53:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 16:53:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 16:53:11] Further information can be found at the LHC@home message board.
[2026-03-29 16:53:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 16:53:11] Checking for apptainer binary...
[2026-03-29 16:53:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 16:53:11] Running /usr/bin/apptainer --version
[2026-03-29 16:53:11] apptainer version 1.4.1-1.1
[2026-03-29 16:53:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 16:53:11] thA317a
[2026-03-29 16:53:11] apptainer works
[2026-03-29 16:53:11] Set ATHENA_PROC_NUMBER=4
[2026-03-29 16:53:11] Set ATHENA_CORE_NUMBER=4
[2026-03-29 16:53:11] Starting ATLAS job with PandaID=7071984732
[2026-03-29 16:53:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 19:36:41]  *** The last 200 lines of the pilot log: ***
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | job 7071984732 has completed (purged errors)
[2026-03-29 19:36:41] 2026-03-29 17:35:53,522 | INFO     | overall cleanup function is called
[2026-03-29 19:36:41] 2026-03-29 17:35:54,529 | INFO     | --- collectZombieJob: --- 10, [2350453]
[2026-03-29 19:36:41] 2026-03-29 17:35:54,529 | INFO     | zombie collector waiting for pid 2350453
[2026-03-29 19:36:41] 2026-03-29 17:35:54,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 19:36:41] 2026-03-29 17:35:54,529 | INFO     | collected zombie processes
[2026-03-29 19:36:41] 2026-03-29 17:35:54,529 | INFO     | will attempt to kill all subprocesses of pid=2350453
[2026-03-29 19:36:41] 2026-03-29 17:35:54,596 | INFO     | process IDs to be killed: [2350453] (in reverse order)
[2026-03-29 19:36:41] 2026-03-29 17:35:54,630 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 19:36:41] 2026-03-29 17:35:54,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 19:36:41] 2026-03-29 17:35:54,632 | INFO     | did not find any defunct processes belonging to 2350453
[2026-03-29 19:36:41] 2026-03-29 17:35:54,634 | INFO     | did not find any defunct processes belonging to 2350453
[2026-03-29 19:36:41] 2026-03-29 17:35:54,634 | INFO     | ready for new job
[2026-03-29 19:36:41] 2026-03-29 17:35:54,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | **************************************
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | **************************************
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | 
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | architecture information:
[2026-03-29 19:36:41] 2026-03-29 17:35:54,635 | INFO     | executing command: cat /etc/os-release
[2026-03-29 19:36:41] 2026-03-29 17:35:54,646 | INFO     | cat /etc/os-release:
[2026-03-29 19:36:41] NAME="CentOS Linux"
[2026-03-29 19:36:41] VERSION="7 (Core)"
[2026-03-29 19:36:41] ID="centos"
[2026-03-29 19:36:41] ID_LIKE="rhel fedora"
[2026-03-29 19:36:41] VERSION_ID="7"
[2026-03-29 19:36:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 19:36:41] ANSI_COLOR="0;31"
[2026-03-29 19:36:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 19:36:41] HOME_URL="https://www.centos.org/"
[2026-03-29 19:36:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 19:36:41] 
[2026-03-29 19:36:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 19:36:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 19:36:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 19:36:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 19:36:41] 
[2026-03-29 19:36:41] 2026-03-29 17:35:54,646 | INFO     | **************************************
[2026-03-29 19:36:41] 2026-03-29 17:35:55,149 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 19:36:41] 2026-03-29 17:35:55,162 | INFO     | sufficient remaining disk space (229544820736 B)
[2026-03-29 19:36:41] 2026-03-29 17:35:55,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 19:36:41] 2026-03-29 17:35:55,162 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 19:36:41] 2026-03-29 17:35:55,162 | INFO     | update_server=False
[2026-03-29 19:36:41] 2026-03-29 17:35:55,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 19:36:41] 2026-03-29 17:35:55,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 19:36:41] 2026-03-29 17:35:55,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 19:36:41] 2026-03-29 17:35:55,163 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 19:36:41] 2026-03-29 17:35:55,543 | INFO     | all payload control threads have been joined
[2026-03-29 19:36:41] 2026-03-29 17:35:55,583 | INFO     | all job control threads have been joined
[2026-03-29 19:36:41] 2026-03-29 17:35:55,641 | WARNING  | process 2350453 can no longer be monitored (due to stat problems) - aborting
[2026-03-29 19:36:41] 2026-03-29 17:35:55,688 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 19:36:41] 2026-03-29 17:35:55,744 | INFO     | all data control threads have been joined
[2026-03-29 19:36:41] 2026-03-29 17:35:55,748 | INFO     | number of running child processes to parent process 2350453: 1
[2026-03-29 19:36:41] 2026-03-29 17:35:55,748 | INFO     | maximum number of monitored processes: 6
[2026-03-29 19:36:41] 2026-03-29 17:35:55,748 | INFO     | aborting job monitoring since job object (job id=7071984732) has expired
[2026-03-29 19:36:41] 2026-03-29 17:35:55,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 19:36:41] 2026-03-29 17:35:55,748 | INFO     | will abort loop
[2026-03-29 19:36:41] 2026-03-29 17:35:56,168 | INFO     | [job] retrieve thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,168 | INFO     | [job] queue monitor thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,259 | INFO     | [payload] validate_post thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,398 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,549 | INFO     | [payload] control thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,589 | INFO     | [job] control thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,617 | INFO     | [payload] failed_post thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,749 | INFO     | [data] control thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:56,754 | INFO     | [job] job monitor thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,099 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,100 | INFO     | [job] validate thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,169 | INFO     | [data] copytool_out thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,193 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,344 | INFO     | [data] copytool_in thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:57,436 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:35:59,169 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 19:36:41] 2026-03-29 17:36:24,880 | INFO     | PID=2345949 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 19:36:41] 2026-03-29 17:36:24,880 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 19:36:41] 2026-03-29 17:36:24,880 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 19:36:41] 2026-03-29 17:36:24,880 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 19:36:41] 2026-03-29 17:36:34,414 | INFO     | [monitor] cgroup control has ended
[2026-03-29 19:36:41] 2026-03-29 17:36:36,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183718532928)>', '<ExcThread(monitor, started 140183076849408)>']
[2026-03-29 19:36:41] 2026-03-29 17:36:36,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 19:36:41] 2026-03-29 17:36:36,945 | INFO     | [monitor] control thread has ended
[2026-03-29 19:36:41] 2026-03-29 17:36:41,421 | INFO     | all workflow threads have been joined
[2026-03-29 19:36:41] 2026-03-29 17:36:41,421 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 19:36:41] 2026-03-29 17:36:41,421 | INFO     | traces error code: 0
[2026-03-29 19:36:41] 2026-03-29 17:36:41,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 19:36:41] 2026-03-29 17:36:41,471 [wrapper] ==== pilot stdout END ====
[2026-03-29 19:36:41] 2026-03-29 17:36:41,473 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 19:36:41] 2026-03-29 17:36:41,476 [wrapper] pilotpid: 2345949
[2026-03-29 19:36:41] 2026-03-29 17:36:41,479 [wrapper] Pilot exit status: 0
[2026-03-29 19:36:41] 2026-03-29 17:36:41,487 [wrapper] pandaids: 7071984732
[2026-03-29 19:36:41] 2026-03-29 17:36:41,509 [wrapper] cleanup supervisor_pilot 2357411 2345950
[2026-03-29 19:36:41] 2026-03-29 17:36:41,512 [wrapper] Test setup, not cleaning
[2026-03-29 19:36:41] 2026-03-29 17:36:41,515 [wrapper] apfmon messages muted
[2026-03-29 19:36:41] 2026-03-29 17:36:41,517 [wrapper] ==== wrapper stdout END ====
[2026-03-29 19:36:41] 2026-03-29 17:36:41,520 [wrapper] ==== wrapper stderr END ====
[2026-03-29 19:36:41]  *** Error codes and diagnostics ***
[2026-03-29 19:36:41]     "exeErrorCode": 0,
[2026-03-29 19:36:41]     "exeErrorDiag": "",
[2026-03-29 19:36:41]     "pilotErrorCode": 0,
[2026-03-29 19:36:41]     "pilotErrorDiag": "",
[2026-03-29 19:36:41]  *** Listing of results directory ***
[2026-03-29 19:36:41] total 488700
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc    585013 Mar 28 13:19 pilot3.tar.gz
[2026-03-29 19:36:41] -rwx------ 1 boinc boinc     36322 Mar 28 13:22 runpilot2-wrapper.sh
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc      5118 Mar 28 13:24 queuedata.json
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc       100 Mar 29 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 19:36:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 16:53 run_atlas
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc       105 Mar 29 16:53 job.xml
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc 242234655 Mar 29 16:53 EVNT.49137320._000011.pool.root.1
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc    597554 Mar 29 16:53 input.tar.gz
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc     15845 Mar 29 16:53 start_atlas.sh
[2026-03-29 19:36:41] drwxrwx--x 2 boinc boinc      4096 Mar 29 16:53 shared
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc         0 Mar 29 16:53 boinc_setup_complete
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc      6439 Mar 29 16:53 init_data.xml
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc         0 Mar 29 16:53 boinc_lockfile
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc      2610 Mar 29 16:53 pandaJob.out
[2026-03-29 19:36:41] -rw------- 1 boinc boinc   1003389 Mar 29 16:53 agis_schedconf.cvmfs.json
[2026-03-29 19:36:41] -rw------- 1 boinc boinc   1511579 Mar 29 16:53 agis_ddmendpoints.agis.ALL.json
[2026-03-29 19:36:41] -rw------- 1 boinc boinc       417 Mar 29 16:53 workernode_map.json
[2026-03-29 19:36:41] drwx------ 5 boinc boinc      4096 Mar 29 16:53 pilot3
[2026-03-29 19:36:41] -rw------- 1 boinc boinc 250799936 Mar 29 19:35 HITS.49182524._001702.pool.root.1
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc       529 Mar 29 19:35 boinc_task_state.xml
[2026-03-29 19:36:41] -rw------- 1 boinc boinc      1017 Mar 29 19:35 memory_monitor_summary.json
[2026-03-29 19:36:41] -rw------- 1 boinc boinc    349845 Mar 29 19:35 log.49182524._001702.job.log.tgz.1
[2026-03-29 19:36:41] -rw------- 1 boinc boinc      6284 Mar 29 19:35 heartbeat.json
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc        27 Mar 29 19:36 wrapper_checkpoint.txt
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc      8192 Mar 29 19:36 boinc_mmap_file
[2026-03-29 19:36:41] -rw------- 1 boinc boinc        95 Mar 29 19:36 pilot_heartbeat.json
[2026-03-29 19:36:41] -rw------- 1 boinc boinc      5272 Mar 29 19:36 pilotlog.txt
[2026-03-29 19:36:41] -rw------- 1 boinc boinc   1383024 Mar 29 19:36 log.49182524._001702.job.log.1
[2026-03-29 19:36:41] -rw------- 1 boinc boinc       357 Mar 29 19:36 output.list
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc       620 Mar 29 19:36 runtime_log
[2026-03-29 19:36:41] -rw------- 1 boinc boinc   1751040 Mar 29 19:36 result.tar.gz
[2026-03-29 19:36:41] -rw------- 1 boinc boinc       659 Mar 29 19:36 xgHLDmurhQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmC7HKDmHyaT2n.diag
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc      8901 Mar 29 19:36 runtime_log.err
[2026-03-29 19:36:41] -rw-r--r-- 1 boinc boinc     12772 Mar 29 19:36 stderr.txt
[2026-03-29 19:36:41] HITS file was successfully produced:
[2026-03-29 19:36:41] -rw------- 1 boinc boinc 250799936 Mar 29 19:35 shared/HITS.pool.root.1
[2026-03-29 19:36:41]  *** Contents of shared directory: ***
[2026-03-29 19:36:41] total 483804
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc 242234655 Mar 29 16:53 ATLAS.root_0
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc    597554 Mar 29 16:53 input.tar.gz
[2026-03-29 19:36:41] -rw-r--r-- 2 boinc boinc     15845 Mar 29 16:53 start_atlas.sh
[2026-03-29 19:36:41] -rw------- 1 boinc boinc 250799936 Mar 29 19:35 HITS.pool.root.1
[2026-03-29 19:36:41] -rw------- 1 boinc boinc   1751040 Mar 29 19:36 result.tar.gz
19:36:43 (2341836): run_atlas exited; CPU time 37601.040847
19:36:43 (2341836): called boinc_finish(0)

</stderr_txt>
]]>

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