Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:23:58 (2004742): wrapper (7.7.26015): starting
08:23:58 (2004742): wrapper: running run_atlas (--nthreads 4)
[2026-03-29 08:23:58] Arguments: --nthreads 4
[2026-03-29 08:23:58] Threads: 4
[2026-03-29 08:23:58] Checking for CVMFS
[2026-03-29 08:23:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 08:23:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 08:23:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 08:23:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 08:23:58] 2.9.2.0 1822391 1590 80120 157833 2 65 29924948 36864000 0 130560 0 664140 99.980 71585 18049 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 08:23:58] CVMFS is ok
[2026-03-29 08:23:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 08:23:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 08:23:58] Further information can be found at the LHC@home message board.
[2026-03-29 08:23:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 08:23:58] Checking for apptainer binary...
[2026-03-29 08:23:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 08:23:58] Running /usr/bin/apptainer --version
[2026-03-29 08:23:59] apptainer version 1.4.1-1.1
[2026-03-29 08:23:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 08:23:59] thA381
[2026-03-29 08:23:59] apptainer works
[2026-03-29 08:23:59] Set ATHENA_PROC_NUMBER=4
[2026-03-29 08:23:59] Set ATHENA_CORE_NUMBER=4
[2026-03-29 08:23:59] Starting ATLAS job with PandaID=7071169159
[2026-03-29 08:23:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 08:28:18]  *** The last 200 lines of the pilot log: ***
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | job 7071169159 has completed (purged errors)
[2026-03-29 08:28:18] 2026-03-29 06:27:29,749 | INFO     | overall cleanup function is called
[2026-03-29 08:28:18] 2026-03-29 06:27:29,756 | INFO     | PID=2008533 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 08:28:18] 2026-03-29 06:27:30,756 | INFO     | --- collectZombieJob: --- 10, [2012164]
[2026-03-29 08:28:18] 2026-03-29 06:27:30,756 | INFO     | zombie collector waiting for pid 2012164
[2026-03-29 08:28:18] 2026-03-29 06:27:30,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 08:28:18] 2026-03-29 06:27:30,756 | INFO     | collected zombie processes
[2026-03-29 08:28:18] 2026-03-29 06:27:30,756 | INFO     | will attempt to kill all subprocesses of pid=2012164
[2026-03-29 08:28:18] 2026-03-29 06:27:30,799 | INFO     | process IDs to be killed: [2012164] (in reverse order)
[2026-03-29 08:28:18] 2026-03-29 06:27:30,834 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 08:28:18] 2026-03-29 06:27:30,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 08:28:18] 2026-03-29 06:27:30,836 | INFO     | did not find any defunct processes belonging to 2012164
[2026-03-29 08:28:18] 2026-03-29 06:27:30,837 | INFO     | did not find any defunct processes belonging to 2012164
[2026-03-29 08:28:18] 2026-03-29 06:27:30,837 | INFO     | ready for new job
[2026-03-29 08:28:18] 2026-03-29 06:27:30,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 08:28:18] 2026-03-29 06:27:30,838 | INFO     | **************************************
[2026-03-29 08:28:18] 2026-03-29 06:27:30,838 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 08:28:18] 2026-03-29 06:27:30,838 | INFO     | **************************************
[2026-03-29 08:28:18] 2026-03-29 06:27:30,838 | INFO     | 
[2026-03-29 08:28:18] 2026-03-29 06:27:30,838 | INFO     | architecture information:
[2026-03-29 08:28:18] 2026-03-29 06:27:30,839 | INFO     | executing command: cat /etc/os-release
[2026-03-29 08:28:18] 2026-03-29 06:27:30,853 | INFO     | cat /etc/os-release:
[2026-03-29 08:28:18] NAME="CentOS Linux"
[2026-03-29 08:28:18] VERSION="7 (Core)"
[2026-03-29 08:28:18] ID="centos"
[2026-03-29 08:28:18] ID_LIKE="rhel fedora"
[2026-03-29 08:28:18] VERSION_ID="7"
[2026-03-29 08:28:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 08:28:18] ANSI_COLOR="0;31"
[2026-03-29 08:28:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 08:28:18] HOME_URL="https://www.centos.org/"
[2026-03-29 08:28:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 08:28:18] 
[2026-03-29 08:28:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 08:28:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 08:28:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 08:28:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 08:28:18] 
[2026-03-29 08:28:18] 2026-03-29 06:27:30,853 | INFO     | **************************************
[2026-03-29 08:28:18] 2026-03-29 06:27:31,356 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | INFO     | sufficient remaining disk space (229465128960 B)
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | INFO     | update_server=False
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 08:28:18] 2026-03-29 06:27:31,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 08:28:18] 2026-03-29 06:27:31,376 | INFO     | aborting loop
[2026-03-29 08:28:18] 2026-03-29 06:27:31,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 08:28:18] 2026-03-29 06:27:31,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 08:28:18] 2026-03-29 06:27:31,973 | INFO     | all data control threads have been joined
[2026-03-29 08:28:18] 2026-03-29 06:27:32,381 | INFO     | [job] retrieve thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,381 | INFO     | [job] job monitor thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,382 | INFO     | [job] queue monitor thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,468 | INFO     | all job control threads have been joined
[2026-03-29 08:28:18] 2026-03-29 06:27:32,471 | INFO     | [data] copytool_in thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,562 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,639 | INFO     | [payload] failed_post thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:32,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 08:28:18] 2026-03-29 06:27:32,846 | INFO     | all payload control threads have been joined
[2026-03-29 08:28:18] 2026-03-29 06:27:32,976 | INFO     | [data] control thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,382 | INFO     | [data] copytool_out thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,474 | INFO     | [job] control thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,674 | INFO     | [job] validate thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,699 | INFO     | [payload] validate_post thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,785 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,851 | INFO     | [payload] control thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,856 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:33,856 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:27:36,834 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 08:28:18] 2026-03-29 06:28:01,874 | INFO     | PID=2008533 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 08:28:18] 2026-03-29 06:28:01,874 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 08:28:18] 2026-03-29 06:28:01,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 08:28:18] 2026-03-29 06:28:01,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 08:28:18] 2026-03-29 06:28:10,793 | INFO     | [monitor] cgroup control has ended
[2026-03-29 08:28:18] 2026-03-29 06:28:12,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694779889472)>', '<ExcThread(monitor, started 139693408646912)>']
[2026-03-29 08:28:18] 2026-03-29 06:28:12,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 08:28:18] 2026-03-29 06:28:12,933 | INFO     | [monitor] control thread has ended
[2026-03-29 08:28:18] 2026-03-29 06:28:17,829 | INFO     | all workflow threads have been joined
[2026-03-29 08:28:18] 2026-03-29 06:28:17,829 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 08:28:18] 2026-03-29 06:28:17,829 | INFO     | traces error code: 0
[2026-03-29 08:28:18] 2026-03-29 06:28:17,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 08:28:18] 2026-03-29 06:28:17,905 [wrapper] ==== pilot stdout END ====
[2026-03-29 08:28:18] 2026-03-29 06:28:17,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 08:28:18] 2026-03-29 06:28:17,913 [wrapper] pilotpid: 2008533
[2026-03-29 08:28:18] 2026-03-29 06:28:17,918 [wrapper] Pilot exit status: 0
[2026-03-29 08:28:18] 2026-03-29 06:28:17,929 [wrapper] pandaids: 7071169159
[2026-03-29 08:28:18] 2026-03-29 06:28:17,951 [wrapper] cleanup supervisor_pilot 2008539 2008534
[2026-03-29 08:28:18] 2026-03-29 06:28:17,955 [wrapper] Test setup, not cleaning
[2026-03-29 08:28:18] 2026-03-29 06:28:17,959 [wrapper] apfmon messages muted
[2026-03-29 08:28:18] 2026-03-29 06:28:17,963 [wrapper] ==== wrapper stdout END ====
[2026-03-29 08:28:18] 2026-03-29 06:28:17,966 [wrapper] ==== wrapper stderr END ====
[2026-03-29 08:28:18]  *** Error codes and diagnostics ***
[2026-03-29 08:28:18]     "exeErrorCode": 0,
[2026-03-29 08:28:18]     "exeErrorDiag": "",
[2026-03-29 08:28:18]     "pilotErrorCode": 1305,
[2026-03-29 08:28:18]     "pilotErrorDiag": "Failed to execute payload:/bin/bash: Sim_tf.py: command not found",
[2026-03-29 08:28:18]  *** Listing of results directory ***
[2026-03-29 08:28:18] total 314596
[2026-03-29 08:28:18] -rwx------ 1 boinc boinc     36322 Mar 27 08:52 runpilot2-wrapper.sh
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc    585013 Mar 28 00:08 pilot3.tar.gz
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc      5118 Mar 28 00:08 queuedata.json
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc       100 Mar 29 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 08:28:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 08:23 run_atlas
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc       105 Mar 29 08:23 job.xml
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc 318038474 Mar 29 08:23 EVNT.48025098._001129.pool.root.1
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc    597530 Mar 29 08:23 input.tar.gz
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc     15845 Mar 29 08:23 start_atlas.sh
[2026-03-29 08:28:18] drwxrwx--x 2 boinc boinc      4096 Mar 29 08:23 shared
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc         0 Mar 29 08:23 boinc_setup_complete
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc      6376 Mar 29 08:23 init_data.xml
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc         0 Mar 29 08:23 boinc_lockfile
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc      2481 Mar 29 08:23 pandaJob.out
[2026-03-29 08:28:18] -rw------- 1 boinc boinc   1003389 Mar 29 08:24 agis_schedconf.cvmfs.json
[2026-03-29 08:28:18] -rw------- 1 boinc boinc   1511579 Mar 29 08:24 agis_ddmendpoints.agis.ALL.json
[2026-03-29 08:28:18] -rw------- 1 boinc boinc       427 Mar 29 08:24 workernode_map.json
[2026-03-29 08:28:18] drwx------ 5 boinc boinc      4096 Mar 29 08:24 pilot3
[2026-03-29 08:28:18] -rw------- 1 boinc boinc      8562 Mar 29 08:25 log.48080911._006702.job.log.tgz.1
[2026-03-29 08:28:18] -rw------- 1 boinc boinc        95 Mar 29 08:27 pilot_heartbeat.json
[2026-03-29 08:28:18] -rw------- 1 boinc boinc      2680 Mar 29 08:27 heartbeat.json
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc        22 Mar 29 08:27 wrapper_checkpoint.txt
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc      8192 Mar 29 08:27 boinc_mmap_file
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc       522 Mar 29 08:27 boinc_task_state.xml
[2026-03-29 08:28:18] -rw------- 1 boinc boinc      4748 Mar 29 08:28 pilotlog.txt
[2026-03-29 08:28:18] -rw------- 1 boinc boinc     89049 Mar 29 08:28 log.48080911._006702.job.log.1
[2026-03-29 08:28:18] -rw------- 1 boinc boinc       188 Mar 29 08:28 output.list
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc       620 Mar 29 08:28 runtime_log
[2026-03-29 08:28:18] -rw------- 1 boinc boinc    112640 Mar 29 08:28 result.tar.gz
[2026-03-29 08:28:18] -rw------- 1 boinc boinc       644 Mar 29 08:28 upeLDmf8GQ9nsSi4ap6QjLDmwznN0nGgGQJmEDGKDmhFFKDms2UBon.diag
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc      8743 Mar 29 08:28 runtime_log.err
[2026-03-29 08:28:18] -rw-r--r-- 1 boinc boinc     12533 Mar 29 08:28 stderr.txt
[2026-03-29 08:28:18] No HITS result produced
[2026-03-29 08:28:18]  *** Contents of shared directory: ***
[2026-03-29 08:28:18] total 311304
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc 318038474 Mar 29 08:23 ATLAS.root_0
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc    597530 Mar 29 08:23 input.tar.gz
[2026-03-29 08:28:18] -rw-r--r-- 2 boinc boinc     15845 Mar 29 08:23 start_atlas.sh
[2026-03-29 08:28:18] -rw------- 1 boinc boinc    112640 Mar 29 08:28 result.tar.gz
08:28:19 (2004742): run_atlas exited; CPU time 6.995541
08:28:19 (2004742): called boinc_finish(0)

</stderr_txt>
]]>

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