Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:55:07 (2932875): wrapper (7.7.26015): starting
04:55:07 (2932875): wrapper: running run_atlas (--nthreads 12)
[2026-04-03 04:55:07] Arguments: --nthreads 12
[2026-04-03 04:55:07] Threads: 12
[2026-04-03 04:55:07] Checking for CVMFS
[2026-04-03 04:55:07] No cvmfs_config command found, will try listing directly
[2026-04-03 04:55:07] CVMFS is ok
[2026-04-03 04:55:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-03 04:55:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-03 04:55:07] Further information can be found at the LHC@home message board.
[2026-04-03 04:55:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-03 04:55:07] Checking for apptainer binary...
[2026-04-03 04:55:07] which: no apptainer in ((null))
[2026-04-03 04:55:07] apptainer is not installed, using version from CVMFS
[2026-04-03 04:55:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-03 04:55:07] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-04-03 04:55:07] apptainer works
[2026-04-03 04:55:07] Set ATHENA_PROC_NUMBER=12
[2026-04-03 04:55:07] Set ATHENA_CORE_NUMBER=12
[2026-04-03 04:55:07] Starting ATLAS job with PandaID=7065656566
[2026-04-03 04:55:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-03 05:18:22]  *** The last 200 lines of the pilot log: ***
[2026-04-03 05:18:22]  guid=12e59f0c-2804-4507-bdbf-f6feb977ceb0
[2026-04-03 05:18:22]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-03 05:18:22]  is_altstaged=None
[2026-04-03 05:18:22]  is_tar=False
[2026-04-03 05:18:22]  lfn=log.48967102._004455.job.log.tgz.1
[2026-04-03 05:18:22]  mtime=0
[2026-04-03 05:18:22]  protocol_id=None
[2026-04-03 05:18:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-03 05:18:22]  replicas=None
[2026-04-03 05:18:22]  scope=mc23_13p6TeV
[2026-04-03 05:18:22]  status=None
[2026-04-03 05:18:22]  status_code=0
[2026-04-03 05:18:22]  storage_token=
[2026-04-03 05:18:22]  surl=/var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656566/log.48967102._004455.job.log.tgz.1
[2026-04-03 05:18:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/bc/log.48967102._004455.job.log.tgz.1
[2026-04-03 05:18:22]  workdir=None
[2026-04-03 05:18:22] ]
[2026-04-03 05:18:22] 2026-04-03 03:17:20,392 | INFO     | transferring file log.48967102._004455.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656566/log.48967102._004455.job.log.tgz.1 to /var/lib/b
[2026-04-03 05:18:22] 2026-04-03 03:17:20,392 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656566/log.48967102._004455.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/6/lo
[2026-04-03 05:18:22] 2026-04-03 03:17:20,404 | INFO     | adding to output.list: log.48967102._004455.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/bc/log.48967102._004455.job.log.tg
[2026-04-03 05:18:22] 2026-04-03 03:17:20,405 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-03 05:18:22] 2026-04-03 03:17:20,405 | INFO     | summary of transferred files:
[2026-04-03 05:18:22] 2026-04-03 03:17:20,405 | INFO     |  -- lfn=log.48967102._004455.job.log.tgz.1, status_code=0, status=transferred
[2026-04-03 05:18:22] 2026-04-03 03:17:20,405 | INFO     | stage-out finished correctly
[2026-04-03 05:18:22] 2026-04-03 03:17:21,018 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-03 05:18:22] 2026-04-03 03:17:21,682 | INFO     | monitor loop #104: job 0:7065656566 is in state 'finished'
[2026-04-03 05:18:22] 2026-04-03 03:17:21,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-03 05:18:22] 2026-04-03 03:17:21,764 | INFO     | time since job start (1326s) is within the limit (345600.0s)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,134 | INFO     | job 7065656566 has state=finished
[2026-04-03 05:18:22] 2026-04-03 03:17:23,134 | INFO     | preparing for final server update for job 7065656566 in state='finished'
[2026-04-03 05:18:22] 2026-04-03 03:17:23,599 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,599 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656566/jobReport.json
[2026-04-03 05:18:22] 2026-04-03 03:17:23,600 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/6/workernode_map.json
[2026-04-03 05:18:22] 2026-04-03 03:17:23,600 | INFO     | this job has now completed (state=finished)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,601 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,601 | INFO     | log transfer has been attempted: DONE
[2026-04-03 05:18:22] 2026-04-03 03:17:23,601 | INFO     | job 7065656566 has finished - writing final server update
[2026-04-03 05:18:22] 2026-04-03 03:17:23,601 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2891052/.job.ad'
[2026-04-03 05:18:22] 2026-04-03 03:17:23,601 | INFO     | total number of processed events: 400 (read)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | INFO     | using path: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656566/memory_monitor_summary.json (trf name=prmon)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | INFO     | extracted standard info from prmon json
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | INFO     | extracted standard memory fields from prmon json
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-03 05:18:22] 2026-04-03 03:17:23,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | fitting pss+swap vs Time
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | sum of square deviations: 1041880.0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | sum of deviations: -216695851.0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | mean x: 1775185664.0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | mean y: 2904654.533333333
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | intersect: 369215643303.39886
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | chi2: 0.008754790932211702
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | current memory leak: -207.99 B/s (using 15 data points, chi2=0.01)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | could have reported an average CPU frequency of 3555 MHz (4 samples)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | ..............................
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | . Timing measurements:
[2026-04-03 05:18:22] 2026-04-03 03:17:23,617 | INFO     | . get job = 0 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . initial setup = 3 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . payload setup = 3 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . stage-in = 0 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . payload execution = 1306 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . stage-out = 0 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | . log creation = 0 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,618 | INFO     | ..............................
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | 
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | job summary report
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | --------------------------------------------------
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | PanDA job id: 7065656566
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | task id: 48967102
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | errors: (none)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | pilot state: finished 
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | transexitcode: 0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | exeerrorcode: 0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | exeerrordiag: 
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | exitcode: 0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | exitmsg: OK
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | cpuconsumptiontime: 13859 s
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | nevents: 400
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | neventsw: 0
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | pid: 2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | pgrp: 2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | corecount: 12
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | event service: False
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | sizes: {0: 2280267, 11: 2280267, 1313: 2304925, 1314: 2313945, 1315: 2314001, 1317: 2314195}
[2026-04-03 05:18:22] 2026-04-03 03:17:23,649 | INFO     | --------------------------------------------------
[2026-04-03 05:18:22] 2026-04-03 03:17:23,650 | INFO     | 
[2026-04-03 05:18:22] 2026-04-03 03:17:23,650 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/6
[2026-04-03 05:18:22] 2026-04-03 03:17:23,665 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,665 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | job 7065656566 has completed (purged errors)
[2026-04-03 05:18:22] 2026-04-03 03:17:23,666 | INFO     | overall cleanup function is called
[2026-04-03 05:18:22] 2026-04-03 03:17:24,673 | INFO     | --- collectZombieJob: --- 10, [2943467]
[2026-04-03 05:18:22] 2026-04-03 03:17:24,674 | INFO     | zombie collector waiting for pid 2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:24,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-03 05:18:22] 2026-04-03 03:17:24,674 | INFO     | collected zombie processes
[2026-04-03 05:18:22] 2026-04-03 03:17:24,674 | INFO     | will attempt to kill all subprocesses of pid=2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:24,854 | INFO     | process IDs to be killed: [2943467] (in reverse order)
[2026-04-03 05:18:22] 2026-04-03 03:17:24,946 | WARNING  | found no corresponding commands to process id(s)
[2026-04-03 05:18:22] 2026-04-03 03:17:24,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-03 05:18:22] 2026-04-03 03:17:24,963 | INFO     | did not find any defunct processes belonging to 2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | did not find any defunct processes belonging to 2943467
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | ready for new job
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | **************************************
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-03 05:18:22] 2026-04-03 03:17:24,974 | INFO     | **************************************
[2026-04-03 05:18:22] 2026-04-03 03:17:24,975 | INFO     | 
[2026-04-03 05:18:22] 2026-04-03 03:17:24,977 | INFO     | architecture information:
[2026-04-03 05:18:22] 2026-04-03 03:17:24,978 | INFO     | executing command: cat /etc/os-release
[2026-04-03 05:18:22] 2026-04-03 03:17:24,988 | INFO     | cat /etc/os-release:
[2026-04-03 05:18:22] NAME="CentOS Linux"
[2026-04-03 05:18:22] VERSION="7 (Core)"
[2026-04-03 05:18:22] ID="centos"
[2026-04-03 05:18:22] ID_LIKE="rhel fedora"
[2026-04-03 05:18:22] VERSION_ID="7"
[2026-04-03 05:18:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-03 05:18:22] ANSI_COLOR="0;31"
[2026-04-03 05:18:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-03 05:18:22] HOME_URL="https://www.centos.org/"
[2026-04-03 05:18:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-03 05:18:22] 
[2026-04-03 05:18:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-03 05:18:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-03 05:18:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-03 05:18:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-03 05:18:22] 
[2026-04-03 05:18:22] 2026-04-03 03:17:24,988 | INFO     | **************************************
[2026-04-03 05:18:22] 2026-04-03 03:17:25,491 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/6
[2026-04-03 05:18:22] 2026-04-03 03:17:25,504 | INFO     | sufficient remaining disk space (316803121152 B)
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | INFO     | current server update state: UPDATING_FINAL
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | INFO     | update_server=False
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-03 05:18:22] 2026-04-03 03:17:25,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-03 05:18:22] 2026-04-03 03:17:25,506 | INFO     | aborting loop
[2026-04-03 05:18:22] 2026-04-03 03:17:25,740 | INFO     | all data control threads have been joined
[2026-04-03 05:18:22] 2026-04-03 03:17:25,792 | INFO     | job.realtimelogging is not enabled
[2026-04-03 05:18:22] 2026-04-03 03:17:25,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-03 05:18:22] 2026-04-03 03:17:25,975 | INFO     | all payload control threads have been joined
[2026-04-03 05:18:22] 2026-04-03 03:17:26,178 | INFO     | all job control threads have been joined
[2026-04-03 05:18:22] 2026-04-03 03:17:26,510 | INFO     | [job] retrieve thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,511 | INFO     | [job] queue monitor thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,511 | INFO     | [job] job monitor thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,746 | INFO     | [data] control thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,798 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,807 | INFO     | [payload] validate_post thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:26,981 | INFO     | [payload] control thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-03 05:18:22] 2026-04-03 03:17:27,183 | INFO     | [job] control thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,576 | INFO     | [job] validate thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,620 | INFO     | [job] create_data_payload thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,655 | INFO     | [payload] validate_pre thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,783 | INFO     | [data] copytool_in thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,797 | INFO     | [payload] execute_payloads thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,879 | INFO     | [payload] failed_post thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:27,941 | INFO     | [data] copytool_out thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:31,068 | INFO     | [data] queue_monitor thread has finished
[2026-04-03 05:18:22] 2026-04-03 03:17:55,096 | INFO     | PID=2937732 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-03 05:18:22] 2026-04-03 03:17:55,096 | INFO     | .. there are 2 such processes running
[2026-04-03 05:18:22] 2026-04-03 03:17:55,096 | INFO     | found 0 job(s) in 20 queues
[2026-04-03 05:18:22] 2026-04-03 03:17:55,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-03 05:18:22] 2026-04-03 03:17:55,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-03 05:18:22] 2026-04-03 03:18:16,259 | INFO     | [monitor] cgroup control has ended
[2026-04-03 05:18:22] 2026-04-03 03:18:17,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22688891713344)>', '<ExcThread(monitor, started 22688654702336)>']
[2026-04-03 05:18:22] 2026-04-03 03:18:18,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-03 05:18:22] 2026-04-03 03:18:18,211 | INFO     | [monitor] control thread has ended
[2026-04-03 05:18:22] 2026-04-03 03:18:22,585 | INFO     | all workflow threads have been joined
[2026-04-03 05:18:22] 2026-04-03 03:18:22,585 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-03 05:18:22] 2026-04-03 03:18:22,585 | INFO     | traces error code: 0
[2026-04-03 05:18:22] 2026-04-03 03:18:22,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-03 05:18:22] 2026-04-03 03:18:22,667 [wrapper] ==== pilot stdout END ====
[2026-04-03 05:18:22] 2026-04-03 03:18:22,670 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-03 05:18:22] 2026-04-03 03:18:22,672 [wrapper] pilotpid: 2937732
[2026-04-03 05:18:22] 2026-04-03 03:18:22,673 [wrapper] Pilot exit status: 0
[2026-04-03 05:18:22] 2026-04-03 03:18:22,681 [wrapper] pandaids: 7065656566
[2026-04-03 05:18:22] 2026-04-03 03:18:22,757 [wrapper] cleanup supervisor_pilot 2978313 2937733
[2026-04-03 05:18:22] 2026-04-03 03:18:22,760 [wrapper] Test setup, not cleaning
[2026-04-03 05:18:22] 2026-04-03 03:18:22,761 [wrapper] apfmon messages muted
[2026-04-03 05:18:22] 2026-04-03 03:18:22,765 [wrapper] ==== wrapper stdout END ====
[2026-04-03 05:18:22] 2026-04-03 03:18:22,767 [wrapper] ==== wrapper stderr END ====
[2026-04-03 05:18:22]  *** Error codes and diagnostics ***
[2026-04-03 05:18:22]     "exeErrorCode": 0,
[2026-04-03 05:18:22]     "exeErrorDiag": "",
[2026-04-03 05:18:22]     "pilotErrorCode": 0,
[2026-04-03 05:18:22]     "pilotErrorDiag": "",
[2026-04-03 05:18:22]  *** Listing of results directory ***
[2026-04-03 05:18:22] total 401168
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc    585013 Mar 28 16:51 pilot3.tar.gz
[2026-04-03 05:18:22] -rwx------. 1 boinc boinc     36322 Mar 28 16:55 runpilot2-wrapper.sh
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc      5118 Mar 28 16:56 queuedata.json
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc       100 Apr  3 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-03 05:18:22] -rwxr-xr-x. 1 boinc boinc      7986 Apr  3 04:55 run_atlas
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc       105 Apr  3 04:55 job.xml
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc      6707 Apr  3 04:55 init_data.xml
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc 211466863 Apr  3 04:55 EVNT.48967100._000175.pool.root.1
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc     15845 Apr  3 04:55 start_atlas.sh
[2026-04-03 05:18:22] drwxrwx--x. 2 boinc boinc      4096 Apr  3 04:55 shared
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc    597529 Apr  3 04:55 input.tar.gz
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc         0 Apr  3 04:55 boinc_lockfile
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc      2579 Apr  3 04:55 pandaJob.out
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc   1005191 Apr  3 04:55 agis_schedconf.cvmfs.json
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc   1511579 Apr  3 04:55 agis_ddmendpoints.agis.ALL.json
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc       440 Apr  3 04:55 workernode_map.json
[2026-04-03 05:18:22] drwx------. 5 boinc boinc      4096 Apr  3 04:55 pilot3
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc       529 Apr  3 05:16 boinc_task_state.xml
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc 194217743 Apr  3 05:16 HITS.48967102._004455.pool.root.1
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc      1022 Apr  3 05:17 memory_monitor_summary.json
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc    348772 Apr  3 05:17 log.48967102._004455.job.log.tgz.1
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc      6348 Apr  3 05:17 heartbeat.json
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc        95 Apr  3 05:17 pilot_heartbeat.json
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc      8192 Apr  3 05:17 boinc_mmap_file
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc        27 Apr  3 05:17 wrapper_checkpoint.txt
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc      4901 Apr  3 05:18 pilotlog.txt
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc    234701 Apr  3 05:18 log.48967102._004455.job.log.1
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc       357 Apr  3 05:18 output.list
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc       620 Apr  3 05:18 runtime_log
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc    604160 Apr  3 05:18 result.tar.gz
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc      9206 Apr  3 05:18 runtime_log.err
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc       658 Apr  3 05:18 fnjMDmVBlQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmsoKKDmNZK78m.diag
[2026-04-03 05:18:22] -rw-r--r--. 1 boinc boinc     21232 Apr  3 05:18 stderr.txt
[2026-04-03 05:18:22] HITS file was successfully produced:
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc 194217743 Apr  3 05:16 shared/HITS.pool.root.1
[2026-04-03 05:18:22]  *** Contents of shared directory: ***
[2026-04-03 05:18:22] total 397380
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc 211466863 Apr  3 04:55 ATLAS.root_0
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc     15845 Apr  3 04:55 start_atlas.sh
[2026-04-03 05:18:22] -rw-r--r--. 2 boinc boinc    597529 Apr  3 04:55 input.tar.gz
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc 194217743 Apr  3 05:16 HITS.pool.root.1
[2026-04-03 05:18:22] -rw-------. 1 boinc boinc    604160 Apr  3 05:18 result.tar.gz
05:18:24 (2932875): run_atlas exited; CPU time 13872.083263
05:18:24 (2932875): called boinc_finish(0)

</stderr_txt>
]]>

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