Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:25:28 (1789278): wrapper (7.7.26015): starting
18:25:28 (1789278): wrapper: running run_atlas (--nthreads 4)
[2026-03-29 18:25:28] Arguments: --nthreads 4
[2026-03-29 18:25:28] Threads: 4
[2026-03-29 18:25:28] Checking for CVMFS
[2026-03-29 18:25:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 18:25:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 18:25:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 18:25:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 18:25:30] 2.9.2.0 1501249 2378 85460 157849 2 49 32115775 36864001 0 130560 0 949355 99.982 90189 20872 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 18:25:30] CVMFS is ok
[2026-03-29 18:25:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 18:25:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 18:25:30] Further information can be found at the LHC@home message board.
[2026-03-29 18:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 18:25:30] Checking for apptainer binary...
[2026-03-29 18:25:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 18:25:30] Running /usr/bin/apptainer --version
[2026-03-29 18:25:30] apptainer version 1.4.1-1.1
[2026-03-29 18:25:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 18:25:30] thA314
[2026-03-29 18:25:30] apptainer works
[2026-03-29 18:25:30] Set ATHENA_PROC_NUMBER=4
[2026-03-29 18:25:30] Set ATHENA_CORE_NUMBER=4
[2026-03-29 18:25:30] Starting ATLAS job with PandaID=7069718353
[2026-03-29 18:25:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 19:51:18]  *** The last 200 lines of the pilot log: ***
[2026-03-29 19:51:18] 2026-03-29 17:50:45,592 | INFO     | aborting job monitoring since job object (job id=7069718353) has expired
[2026-03-29 19:51:18] 2026-03-29 17:50:46,291 | INFO     | --- collectZombieJob: --- 10, [1797924]
[2026-03-29 19:51:18] 2026-03-29 17:50:46,291 | INFO     | zombie collector waiting for pid 1797924
[2026-03-29 19:51:18] 2026-03-29 17:50:46,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 19:51:18] 2026-03-29 17:50:46,291 | INFO     | collected zombie processes
[2026-03-29 19:51:18] 2026-03-29 17:50:46,291 | INFO     | will attempt to kill all subprocesses of pid=1797924
[2026-03-29 19:51:18] 2026-03-29 17:50:46,337 | INFO     | process IDs to be killed: [1797924] (in reverse order)
[2026-03-29 19:51:18] 2026-03-29 17:50:46,373 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 19:51:18] 2026-03-29 17:50:46,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 19:51:18] 2026-03-29 17:50:46,375 | INFO     | did not find any defunct processes belonging to 1797924
[2026-03-29 19:51:18] 2026-03-29 17:50:46,377 | INFO     | did not find any defunct processes belonging to 1797924
[2026-03-29 19:51:18] 2026-03-29 17:50:46,377 | INFO     | ready for new job
[2026-03-29 19:51:18] 2026-03-29 17:50:46,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | **************************************
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | **************************************
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | 
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | architecture information:
[2026-03-29 19:51:18] 2026-03-29 17:50:46,378 | INFO     | executing command: cat /etc/os-release
[2026-03-29 19:51:18] 2026-03-29 17:50:46,393 | INFO     | cat /etc/os-release:
[2026-03-29 19:51:18] NAME="CentOS Linux"
[2026-03-29 19:51:18] VERSION="7 (Core)"
[2026-03-29 19:51:18] ID="centos"
[2026-03-29 19:51:18] ID_LIKE="rhel fedora"
[2026-03-29 19:51:18] VERSION_ID="7"
[2026-03-29 19:51:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 19:51:18] ANSI_COLOR="0;31"
[2026-03-29 19:51:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 19:51:18] HOME_URL="https://www.centos.org/"
[2026-03-29 19:51:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 19:51:18] 
[2026-03-29 19:51:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 19:51:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 19:51:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 19:51:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 19:51:18] 
[2026-03-29 19:51:18] 2026-03-29 17:50:46,393 | INFO     | **************************************
[2026-03-29 19:51:18] 2026-03-29 17:50:46,897 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | INFO     | sufficient remaining disk space (225966030848 B)
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | INFO     | update_server=False
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 19:51:18] 2026-03-29 17:50:46,915 | INFO     | aborting loop
[2026-03-29 19:51:18] 2026-03-29 17:50:47,620 | INFO     | all payload control threads have been joined
[2026-03-29 19:51:18] 2026-03-29 17:50:47,807 | INFO     | all data control threads have been joined
[2026-03-29 19:51:18] 2026-03-29 17:50:47,920 | INFO     | [job] retrieve thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:47,921 | INFO     | [job] job monitor thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:47,962 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:47,988 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,197 | INFO     | [data] copytool_in thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,242 | INFO     | all job control threads have been joined
[2026-03-29 19:51:18] 2026-03-29 17:50:48,327 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,626 | INFO     | [payload] control thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,796 | INFO     | [payload] failed_post thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,813 | INFO     | [data] control thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:48,918 | INFO     | [data] copytool_out thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:49,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 19:51:18] 2026-03-29 17:50:49,248 | INFO     | [job] control thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:49,267 | INFO     | [monitor] cgroup control has ended
[2026-03-29 19:51:18] 2026-03-29 17:50:49,324 | INFO     | [payload] validate_post thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:49,406 | INFO     | [job] validate thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:49,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 19:51:18] 2026-03-29 17:50:50,891 | INFO     | [job] queue monitor thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:53,228 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:57,840 | INFO     | job.realtimelogging is not enabled
[2026-03-29 19:51:18] 2026-03-29 17:50:58,846 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 19:51:18] 2026-03-29 17:50:59,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278297020224)>', '<ExcThread(monitor, started 140277415126784)>']
[2026-03-29 19:51:18] 2026-03-29 17:51:04,470 | INFO     | all workflow threads have been joined
[2026-03-29 19:51:18] 2026-03-29 17:51:04,470 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 19:51:18] 2026-03-29 17:51:04,470 | INFO     | traces error code: 0
[2026-03-29 19:51:18] 2026-03-29 17:51:04,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 19:51:18] 2026-03-29 17:51:17,945 | INFO     | PID=1793394 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 19:51:18] 2026-03-29 17:51:17,946 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 19:51:18] 2026-03-29 17:51:17,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 19:51:18] 2026-03-29 17:51:17,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 19:51:18] 2026-03-29 17:51:17,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 19:51:18] 2026-03-29 17:51:17,946 | INFO     | [monitor] control thread has ended
[2026-03-29 19:51:18] 2026-03-29 17:51:18,022 [wrapper] ==== pilot stdout END ====
[2026-03-29 19:51:18] 2026-03-29 17:51:18,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 19:51:18] 2026-03-29 17:51:18,031 [wrapper] pilotpid: 1793394
[2026-03-29 19:51:18] 2026-03-29 17:51:18,035 [wrapper] Pilot exit status: 0
[2026-03-29 19:51:18] 2026-03-29 17:51:18,046 [wrapper] pandaids: 7069718353
[2026-03-29 19:51:18] 2026-03-29 17:51:18,070 [wrapper] cleanup supervisor_pilot 1804483 1793395
[2026-03-29 19:51:18] 2026-03-29 17:51:18,074 [wrapper] Test setup, not cleaning
[2026-03-29 19:51:18] 2026-03-29 17:51:18,078 [wrapper] apfmon messages muted
[2026-03-29 19:51:18] 2026-03-29 17:51:18,082 [wrapper] ==== wrapper stdout END ====
[2026-03-29 19:51:18] 2026-03-29 17:51:18,085 [wrapper] ==== wrapper stderr END ====
[2026-03-29 19:51:18]  *** Error codes and diagnostics ***
[2026-03-29 19:51:18]     "exeErrorCode": 0,
[2026-03-29 19:51:18]     "exeErrorDiag": "",
[2026-03-29 19:51:18]     "pilotErrorCode": 0,
[2026-03-29 19:51:18]     "pilotErrorDiag": "",
[2026-03-29 19:51:18]  *** Listing of results directory ***
[2026-03-29 19:51:18] total 414864
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc    585013 Mar 28 20:12 pilot3.tar.gz
[2026-03-29 19:51:18] -rwx------ 1 boinc boinc     36322 Mar 28 20:13 runpilot2-wrapper.sh
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc      5118 Mar 28 20:13 queuedata.json
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc       100 Mar 29 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 19:51:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 18:25 run_atlas
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc       105 Mar 29 18:25 job.xml
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc 214693070 Mar 29 18:25 EVNT.48967100._000069.pool.root.1
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc    597529 Mar 29 18:25 input.tar.gz
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc     15845 Mar 29 18:25 start_atlas.sh
[2026-03-29 19:51:18] drwxrwx--x 2 boinc boinc      4096 Mar 29 18:25 shared
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc         0 Mar 29 18:25 boinc_setup_complete
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc      6376 Mar 29 18:25 init_data.xml
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc         0 Mar 29 18:25 boinc_lockfile
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc      2578 Mar 29 18:25 pandaJob.out
[2026-03-29 19:51:18] -rw------- 1 boinc boinc   1003389 Mar 29 18:25 agis_schedconf.cvmfs.json
[2026-03-29 19:51:18] -rw------- 1 boinc boinc   1511579 Mar 29 18:25 agis_ddmendpoints.agis.ALL.json
[2026-03-29 19:51:18] -rw------- 1 boinc boinc       420 Mar 29 18:25 workernode_map.json
[2026-03-29 19:51:18] drwx------ 5 boinc boinc      4096 Mar 29 18:25 pilot3
[2026-03-29 19:51:18] -rw------- 1 boinc boinc 204164218 Mar 29 19:50 HITS.48967102._005066.pool.root.1
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc       529 Mar 29 19:50 boinc_task_state.xml
[2026-03-29 19:51:18] -rw------- 1 boinc boinc      1019 Mar 29 19:50 memory_monitor_summary.json
[2026-03-29 19:51:18] -rw------- 1 boinc boinc    281047 Mar 29 19:50 log.48967102._005066.job.log.tgz.1
[2026-03-29 19:51:18] -rw------- 1 boinc boinc      6304 Mar 29 19:50 heartbeat.json
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc      8192 Mar 29 19:51 boinc_mmap_file
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc        27 Mar 29 19:51 wrapper_checkpoint.txt
[2026-03-29 19:51:18] -rw------- 1 boinc boinc       747 Mar 29 19:51 pilotlog.txt
[2026-03-29 19:51:18] -rw------- 1 boinc boinc        95 Mar 29 19:51 pilot_heartbeat.json
[2026-03-29 19:51:18] -rw------- 1 boinc boinc    745462 Mar 29 19:51 log.48967102._005066.job.log.1
[2026-03-29 19:51:18] -rw------- 1 boinc boinc       357 Mar 29 19:51 output.list
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc       620 Mar 29 19:51 runtime_log
[2026-03-29 19:51:18] -rw------- 1 boinc boinc   1044480 Mar 29 19:51 result.tar.gz
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc      8896 Mar 29 19:51 runtime_log.err
[2026-03-29 19:51:18] -rw------- 1 boinc boinc       657 Mar 29 19:51 hkOLDmAHoQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmseIKDmSYe4Hm.diag
[2026-03-29 19:51:18] -rw-r--r-- 1 boinc boinc     10835 Mar 29 19:51 stderr.txt
[2026-03-29 19:51:18] HITS file was successfully produced:
[2026-03-29 19:51:18] -rw------- 1 boinc boinc 204164218 Mar 29 19:50 shared/HITS.pool.root.1
[2026-03-29 19:51:18]  *** Contents of shared directory: ***
[2026-03-29 19:51:18] total 410668
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc 214693070 Mar 29 18:25 ATLAS.root_0
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc    597529 Mar 29 18:25 input.tar.gz
[2026-03-29 19:51:18] -rw-r--r-- 2 boinc boinc     15845 Mar 29 18:25 start_atlas.sh
[2026-03-29 19:51:18] -rw------- 1 boinc boinc 204164218 Mar 29 19:50 HITS.pool.root.1
[2026-03-29 19:51:18] -rw------- 1 boinc boinc   1044480 Mar 29 19:51 result.tar.gz
19:51:19 (1789278): run_atlas exited; CPU time 18809.538937
19:51:19 (1789278): called boinc_finish(0)

</stderr_txt>
]]>

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