Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-29 08:18:28 (137548): vboxwrapper version 26210
2026-03-29 08:18:28 (137548): BOINC client version: 7.24.1
2026-03-29 08:18:28 (137548): Detected: VirtualBox VboxManage Interface (Version: 7.2.6)
2026-03-29 08:18:28 (137548): Successfully copied 'init_data.xml' to the shared directory.
2026-03-29 08:18:28 (137548): Create VM. (boinc_326e13b13744cb2a, slot#5)
2026-03-29 08:18:28 (137548): Setting Memory Size for VM. (4100MB)
2026-03-29 08:18:28 (137548): Setting CPU Count for VM. (1)
2026-03-29 08:18:28 (137548): Setting Chipset Options for VM.
2026-03-29 08:18:28 (137548): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-29 08:18:28 (137548): Setting Boot Options for VM.
2026-03-29 08:18:28 (137548): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-29 08:18:28 (137548): Enabling VM Network Access.
2026-03-29 08:18:28 (137548): Disabling USB Support for VM.
2026-03-29 08:18:29 (137548): Disabling COM Port Support for VM.
2026-03-29 08:18:29 (137548): Disabling LPT Port Support for VM.
2026-03-29 08:18:29 (137548): Disabling Audio Support for VM.
2026-03-29 08:18:29 (137548): Disabling Clipboard Support for VM.
2026-03-29 08:18:29 (137548): Disabling Drag and Drop Support for VM.
2026-03-29 08:18:29 (137548): Adding storage controller(s) to VM.
2026-03-29 08:18:29 (137548): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-29 08:18:29 (137548): Adding VirtualBox Guest Additions to VM.
2026-03-29 08:18:29 (137548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-29 08:18:29 (137548): forwarding host port 41613 to guest port 80
2026-03-29 08:18:29 (137548): Enabling remote desktop for VM.
2026-03-29 08:18:30 (137548): Required extension pack not installed, remote desktop not enabled.
2026-03-29 08:18:30 (137548): Enabling shared directory for VM.
2026-03-29 08:18:30 (137548): Starting VM using VBoxManage interface. (boinc_326e13b13744cb2a, slot#5)
2026-03-29 08:18:31 (137548): Successfully started VM. (PID = '138060')
2026-03-29 08:18:31 (137548): Reporting VM Process ID to BOINC.
2026-03-29 08:18:31 (137548): Guest Log: BIOS: VirtualBox 7.2.6
2026-03-29 08:18:31 (137548): Guest Log: CPUID EDX: 0x178bfbff
2026-03-29 08:18:31 (137548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-29 08:18:31 (137548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-29 08:18:31 (137548): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-29 08:18:31 (137548): Detected: Web Application Enabled (http://localhost:41613)
2026-03-29 08:18:31 (137548): Preference change detected
2026-03-29 08:18:31 (137548): Setting CPU throttle for VM. (80%)
2026-03-29 08:18:31 (137548): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-29 08:18:33 (137548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-29 08:18:33 (137548): Guest Log: BIOS: Booting from Hard Disk...
2026-03-29 08:18:36 (137548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-29 08:18:36 (137548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-29 08:18:36 (137548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-29 08:18:41 (137548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-29 08:18:41 (137548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-29 08:18:54 (137548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000183 main     Log opened 2026-03-28T21:18:52.405158000Z
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000319 main     OS Product: Linux
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000353 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000375 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000397 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000398 main     Process ID: 1249
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.000399 main     Package type: LINUX_64BITS_GENERIC
2026-03-29 08:18:54 (137548): Guest Log: 00:00:00.001818 main     5.2.32 r132073 started. Verbose level = 0
2026-03-29 08:18:54 (137548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-29 08:18:54 (137548): Guest Log: [INFO] Mounting shared directory
2026-03-29 08:18:54 (137548): Guest Log: [INFO] Checking for init_data.xml
2026-03-29 08:19:53 (137548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-29 08:19:53 (137548): Guest Log: [INFO] Detected branch: prod
2026-03-29 08:19:57 (137548): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-29 08:19:57 (137548): Guest Log: Copying input files
2026-03-29 08:19:59 (137548): Guest Log: Copied input files into RunAtlas.
2026-03-29 08:19:59 (137548): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-29 08:19:59 (137548): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-29 08:19:59 (137548): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-29 08:19:59 (137548): Guest Log: Further information can be found at the LHC@home message board.
2026-03-29 08:20:19 (137548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-29 08:20:19 (137548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-29 08:20:19 (137548): Guest Log: 2.6.3.0 1539 0 32104 157809 3 1 3117755 4096001 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-03-29 08:20:20 (137548): Guest Log: copied the webapp to /var/www
2026-03-29 08:20:20 (137548): Guest Log: core_number=1
2026-03-29 08:20:21 (137548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-29 08:20:21 (137548): Guest Log:  *** Starting ATLAS job. (PandaID=7065822982 taskID=48955015) ***
2026-03-29 09:57:32 (137548): Status Report: Elapsed Time: '6000.000000'
2026-03-29 09:57:32 (137548): Status Report: CPU Time: '3713.860000'
2026-03-29 11:36:32 (137548): Status Report: Elapsed Time: '12000.000000'
2026-03-29 11:36:32 (137548): Status Report: CPU Time: '8734.030000'
2026-03-29 13:15:33 (137548): Status Report: Elapsed Time: '18000.000000'
2026-03-29 13:15:33 (137548): Status Report: CPU Time: '13749.630000'
2026-03-29 14:54:34 (137548): Status Report: Elapsed Time: '24000.000000'
2026-03-29 14:54:34 (137548): Status Report: CPU Time: '18767.130000'
2026-03-29 16:33:34 (137548): Status Report: Elapsed Time: '30000.000000'
2026-03-29 16:33:34 (137548): Status Report: CPU Time: '23787.890000'
2026-03-29 18:12:35 (137548): Status Report: Elapsed Time: '36000.000000'
2026-03-29 18:12:35 (137548): Status Report: CPU Time: '28784.120000'
2026-03-29 19:51:36 (137548): Status Report: Elapsed Time: '42000.000000'
2026-03-29 19:51:36 (137548): Status Report: CPU Time: '33801.650000'
2026-03-29 21:30:36 (137548): Status Report: Elapsed Time: '48000.000000'
2026-03-29 21:30:36 (137548): Status Report: CPU Time: '38820.060000'
2026-03-29 23:09:37 (137548): Status Report: Elapsed Time: '54000.000000'
2026-03-29 23:09:37 (137548): Status Report: CPU Time: '43837.630000'
2026-03-30 00:32:35 (137548): Guest Log:  *** Job finished ***
2026-03-30 00:32:35 (137548): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:18,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:18,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:28,281 | INFO     | [monitor] cgroup control has ended
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:29,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292657837888)>', '<ExcThread(monitor, started 140292078429952)>']
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:29,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:29,895 | INFO     | [monitor] control thread has ended
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,603 | INFO     | all workflow threads have been joined
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,603 | INFO     | end of generic workflow (traces error code: 0)
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,603 | INFO     | traces error code: 0
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,756 [wrapper] ==== pilot stdout END ====
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,761 [wrapper] ==== wrapper stdout RESUME ====
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,766 [wrapper] pilotpid: 5939
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:34,772 [wrapper] Pilot exit status: 0
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,169 [wrapper] pandaids: 7065822982
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,199 [wrapper] cleanup supervisor_pilot  8917 5940
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,204 [wrapper] Test setup, not cleaning
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,210 [wrapper] apfmon messages muted
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,214 [wrapper] ==== wrapper stdout END ====
2026-03-30 00:32:35 (137548): Guest Log: 2026-03-29 13:32:35,220 [wrapper] ==== wrapper stderr END ====
2026-03-30 00:32:35 (137548): Guest Log:  *** Error codes and diagnostics ***
2026-03-30 00:32:35 (137548): Guest Log:     "exeErrorCode": 0,
2026-03-30 00:32:35 (137548): Guest Log:     "exeErrorDiag": "",
2026-03-30 00:32:35 (137548): Guest Log:     "pilotErrorCode": 0,
2026-03-30 00:32:35 (137548): Guest Log:     "pilotErrorDiag": "",
2026-03-30 00:32:35 (137548): Guest Log:  *** Listing of results directory ***
2026-03-30 00:32:35 (137548): Guest Log: total 198928
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas    585013 Mar 28 17:13 pilot3.tar.gz
2026-03-30 00:32:35 (137548): Guest Log: -rwx------. 1 atlas atlas     36322 Mar 28 17:17 runpilot2-wrapper.sh
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Mar 28 17:18 queuedata.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas      9371 Mar 28 21:19 init_data.xml
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas    597543 Mar 28 21:19 input.tar.gz
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas     15845 Mar 28 21:19 start_atlas.sh
2026-03-30 00:32:35 (137548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 28 21:19 EVNT.46701403._002404.pool.root.1 -> /data/./ATLAS.root_0
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas      2571 Mar 28 21:20 pandaJob.out
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas       427 Mar 28 21:29 workernode_map.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas   1003321 Mar 28 21:30 agis_schedconf.cvmfs.json
2026-03-30 00:32:35 (137548): Guest Log: drwx------. 5 atlas atlas      4096 Mar 28 21:30 pilot3
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas 182095440 Mar 29 13:31 HITS.48955015._026817.pool.root.1
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas        95 Mar 29 13:31 pilot_heartbeat.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas      1025 Mar 29 13:31 memory_monitor_summary.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas   1511579 Mar 29 13:31 agis_ddmendpoints.agis.ALL.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas    959497 Mar 29 13:31 log.48955015._026817.job.log.tgz.1
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas      6374 Mar 29 13:31 heartbeat.json
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas      4801 Mar 29 13:32 pilotlog.txt
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas   7912494 Mar 29 13:32 log.48955015._026817.job.log.1
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas       357 Mar 29 13:32 output.list
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 29 13:32 runtime_log
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas   8888320 Mar 29 13:32 result.tar.gz
2026-03-30 00:32:35 (137548): Guest Log: -rw-r--r--. 1 atlas atlas      8622 Mar 29 13:32 runtime_log.err
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas       654 Mar 29 13:32 PwTMDmSTmQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmAaIKDmxaiCim.diag
2026-03-30 00:32:35 (137548): Guest Log: Looking for outputfile HITS.48955015._026817.pool.root.1
2026-03-30 00:32:35 (137548): Guest Log: HITS file was successfully produced
2026-03-30 00:32:35 (137548): Guest Log: -rw-------. 1 atlas atlas 182095440 Mar 29 13:31 /home/atlas/RunAtlas/HITS.48955015._026817.pool.root.1
2026-03-30 00:32:35 (137548): Guest Log: Successfully finished the ATLAS job!
2026-03-30 00:32:35 (137548): Guest Log: Copying the results back to the shared directory!
2026-03-30 00:32:36 (137548): Guest Log:  *** Contents of shared directory: ***
2026-03-30 00:32:36 (137548): Guest Log: total 438884
2026-03-30 00:32:36 (137548): Guest Log: -rw-r--r--. 1 root root 439894498 Mar 28 21:18 ATLAS.root_0
2026-03-30 00:32:36 (137548): Guest Log: -rw-r--r--. 1 root root      9371 Mar 28 21:18 init_data.xml
2026-03-30 00:32:36 (137548): Guest Log: -rw-r--r--. 1 root root    597543 Mar 28 21:18 input.tar.gz
2026-03-30 00:32:36 (137548): Guest Log: -rw-r--r--. 1 root root   8888320 Mar 29 13:32 result.tar.gz
2026-03-30 00:32:36 (137548): Guest Log: -rw-r--r--. 1 root root     15845 Mar 28 21:18 start_atlas.sh
2026-03-30 00:32:36 (137548): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-30 00:32:36 (137548): VM Completion File Detected.
2026-03-30 00:32:36 (137548): Powering off VM.
2026-03-30 00:32:37 (137548): Successfully stopped VM.
2026-03-30 00:32:37 (137548): Deregistering VM. (boinc_326e13b13744cb2a, slot#5)
2026-03-30 00:32:37 (137548): Removing network bandwidth throttle group from VM.
2026-03-30 00:32:37 (137548): Removing VM from VirtualBox.
2026-03-30 00:32:42 (137548): called boinc_finish(0)

</stderr_txt>
]]>

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