Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:38:41 (3158446): wrapper (7.7.26015): starting
06:38:41 (3158446): wrapper: running run_atlas (--nthreads 12)
[2026-04-03 06:38:41] Arguments: --nthreads 12
[2026-04-03 06:38:41] Threads: 12
[2026-04-03 06:38:41] Checking for CVMFS
[2026-04-03 06:38:41] No cvmfs_config command found, will try listing directly
[2026-04-03 06:38:41] CVMFS is ok
[2026-04-03 06:38:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-03 06:38:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-03 06:38:41] Further information can be found at the LHC@home message board.
[2026-04-03 06:38:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-03 06:38:41] Checking for apptainer binary...
[2026-04-03 06:38:41] which: no apptainer in ((null))
[2026-04-03 06:38:41] apptainer is not installed, using version from CVMFS
[2026-04-03 06:38:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-03 06:38:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-04-03 06:38:41] apptainer works
[2026-04-03 06:38:41] Set ATHENA_PROC_NUMBER=12
[2026-04-03 06:38:41] Set ATHENA_CORE_NUMBER=12
[2026-04-03 06:38:41] Starting ATLAS job with PandaID=7065656981
[2026-04-03 06:38:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-03 06:58:58]  *** The last 200 lines of the pilot log: ***
[2026-04-03 06:58:58]  is_altstaged=None
[2026-04-03 06:58:58]  is_tar=False
[2026-04-03 06:58:58]  lfn=log.48955010._054074.job.log.tgz.1
[2026-04-03 06:58:58]  mtime=0
[2026-04-03 06:58:58]  protocol_id=None
[2026-04-03 06:58:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-03 06:58:58]  replicas=None
[2026-04-03 06:58:58]  scope=mc23_13p6TeV
[2026-04-03 06:58:58]  status=None
[2026-04-03 06:58:58]  status_code=0
[2026-04-03 06:58:58]  storage_token=
[2026-04-03 06:58:58]  surl=/var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656981/log.48955010._054074.job.log.tgz.1
[2026-04-03 06:58:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/ac/log.48955010._054074.job.log.tgz.1
[2026-04-03 06:58:58]  workdir=None
[2026-04-03 06:58:58] ]
[2026-04-03 06:58:58] 2026-04-03 04:57:50,007 | INFO     | transferring file log.48955010._054074.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656981/log.48955010._054074.job.log.tgz.1 to /var/lib/b
[2026-04-03 06:58:58] 2026-04-03 04:57:50,007 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656981/log.48955010._054074.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/6/lo
[2026-04-03 06:58:58] 2026-04-03 04:57:50,022 | INFO     | adding to output.list: log.48955010._054074.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/ac/log.48955010._054074.job.log.tg
[2026-04-03 06:58:58] 2026-04-03 04:57:50,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-03 06:58:58] 2026-04-03 04:57:50,022 | INFO     | summary of transferred files:
[2026-04-03 06:58:58] 2026-04-03 04:57:50,022 | INFO     |  -- lfn=log.48955010._054074.job.log.tgz.1, status_code=0, status=transferred
[2026-04-03 06:58:58] 2026-04-03 04:57:50,023 | INFO     | stage-out finished correctly
[2026-04-03 06:58:58] 2026-04-03 04:57:51,006 | INFO     | monitor loop #91: job 0:7065656981 is in state 'finished'
[2026-04-03 06:58:58] 2026-04-03 04:57:51,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-03 06:58:58] 2026-04-03 04:57:51,218 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-03 06:58:58] 2026-04-03 04:57:51,826 | INFO     | time since job start (1142s) is within the limit (345600.0s)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,509 | INFO     | monitor loop #92: job 0:7065656981 is in state 'finished'
[2026-04-03 06:58:58] 2026-04-03 04:57:53,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,726 | INFO     | job 7065656981 has state=finished
[2026-04-03 06:58:58] 2026-04-03 04:57:53,727 | INFO     | preparing for final server update for job 7065656981 in state='finished'
[2026-04-03 06:58:58] 2026-04-03 04:57:53,727 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656981/jobReport.json
[2026-04-03 06:58:58] 2026-04-03 04:57:53,728 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/6/workernode_map.json
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | INFO     | this job has now completed (state=finished)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | INFO     | log transfer has been attempted: DONE
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | INFO     | job 7065656981 has finished - writing final server update
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2891052/.job.ad'
[2026-04-03 06:58:58] 2026-04-03 04:57:53,729 | INFO     | total number of processed events: 400 (read)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | INFO     | using path: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7065656981/memory_monitor_summary.json (trf name=prmon)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | INFO     | extracted standard info from prmon json
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | INFO     | extracted standard memory fields from prmon json
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-03 06:58:58] 2026-04-03 04:57:53,744 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | fitting pss+swap vs Time
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | sum of square deviations: 532103.0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | sum of deviations: -214489786.0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | mean x: 1775191788.5
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | mean y: 3015657.0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | intersect: 715579711943.851
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | chi2: 0.0046060088289198485
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | current memory leak: -403.10 B/s (using 12 data points, chi2=0.00)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | could have reported an average CPU frequency of 3797 MHz (4 samples)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | ..............................
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . Timing measurements:
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . get job = 0 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . initial setup = 2 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . payload setup = 4 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . stage-in = 0 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . payload execution = 1120 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,745 | INFO     | . stage-out = 0 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,746 | INFO     | . log creation = 0 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,746 | INFO     | ..............................
[2026-04-03 06:58:58] 2026-04-03 04:57:53,782 | INFO     | 
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | job summary report
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | --------------------------------------------------
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | PanDA job id: 7065656981
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | task id: 48955010
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | errors: (none)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | pilot state: finished 
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | transexitcode: 0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | exeerrorcode: 0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | exeerrordiag: 
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | exitcode: 0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | exitmsg: OK
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | cpuconsumptiontime: 11430 s
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | nevents: 400
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | neventsw: 0
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | pid: 3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | pgrp: 3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | corecount: 12
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | event service: False
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | sizes: {0: 2280142, 10: 2280142, 1128: 2304755, 1130: 2313775, 1131: 2313831, 1134: 2314025}
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | --------------------------------------------------
[2026-04-03 06:58:58] 2026-04-03 04:57:53,783 | INFO     | 
[2026-04-03 06:58:58] 2026-04-03 04:57:53,784 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/6
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | job 7065656981 has completed (purged errors)
[2026-04-03 06:58:58] 2026-04-03 04:57:53,800 | INFO     | overall cleanup function is called
[2026-04-03 06:58:58] 2026-04-03 04:57:54,807 | INFO     | --- collectZombieJob: --- 10, [3169524]
[2026-04-03 06:58:58] 2026-04-03 04:57:54,807 | INFO     | zombie collector waiting for pid 3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:54,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-03 06:58:58] 2026-04-03 04:57:54,807 | INFO     | collected zombie processes
[2026-04-03 06:58:58] 2026-04-03 04:57:54,807 | INFO     | will attempt to kill all subprocesses of pid=3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:54,985 | INFO     | process IDs to be killed: [3169524] (in reverse order)
[2026-04-03 06:58:58] 2026-04-03 04:57:55,088 | WARNING  | found no corresponding commands to process id(s)
[2026-04-03 06:58:58] 2026-04-03 04:57:55,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-03 06:58:58] 2026-04-03 04:57:55,107 | INFO     | did not find any defunct processes belonging to 3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:55,116 | INFO     | did not find any defunct processes belonging to 3169524
[2026-04-03 06:58:58] 2026-04-03 04:57:55,116 | INFO     | ready for new job
[2026-04-03 06:58:58] 2026-04-03 04:57:55,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-03 06:58:58] 2026-04-03 04:57:55,117 | INFO     | **************************************
[2026-04-03 06:58:58] 2026-04-03 04:57:55,117 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-03 06:58:58] 2026-04-03 04:57:55,117 | INFO     | **************************************
[2026-04-03 06:58:58] 2026-04-03 04:57:55,117 | INFO     | 
[2026-04-03 06:58:58] 2026-04-03 04:57:55,121 | INFO     | architecture information:
[2026-04-03 06:58:58] 2026-04-03 04:57:55,121 | INFO     | executing command: cat /etc/os-release
[2026-04-03 06:58:58] 2026-04-03 04:57:55,134 | INFO     | cat /etc/os-release:
[2026-04-03 06:58:58] NAME="CentOS Linux"
[2026-04-03 06:58:58] VERSION="7 (Core)"
[2026-04-03 06:58:58] ID="centos"
[2026-04-03 06:58:58] ID_LIKE="rhel fedora"
[2026-04-03 06:58:58] VERSION_ID="7"
[2026-04-03 06:58:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-03 06:58:58] ANSI_COLOR="0;31"
[2026-04-03 06:58:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-03 06:58:58] HOME_URL="https://www.centos.org/"
[2026-04-03 06:58:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-03 06:58:58] 
[2026-04-03 06:58:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-03 06:58:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-03 06:58:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-03 06:58:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-03 06:58:58] 
[2026-04-03 06:58:58] 2026-04-03 04:57:55,134 | INFO     | **************************************
[2026-04-03 06:58:58] 2026-04-03 04:57:55,637 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/6
[2026-04-03 06:58:58] 2026-04-03 04:57:55,653 | INFO     | sufficient remaining disk space (317749985280 B)
[2026-04-03 06:58:58] 2026-04-03 04:57:55,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-03 06:58:58] 2026-04-03 04:57:55,654 | INFO     | current server update state: UPDATING_FINAL
[2026-04-03 06:58:58] 2026-04-03 04:57:55,654 | INFO     | update_server=False
[2026-04-03 06:58:58] 2026-04-03 04:57:55,654 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-03 06:58:58] 2026-04-03 04:57:55,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-03 06:58:58] 2026-04-03 04:57:55,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-03 06:58:58] 2026-04-03 04:57:56,012 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-03 06:58:58] 2026-04-03 04:57:56,013 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-03 06:58:58] 2026-04-03 04:57:56,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-03 06:58:58] 2026-04-03 04:57:56,013 | INFO     | will abort loop
[2026-04-03 06:58:58] 2026-04-03 04:57:56,100 | INFO     | all data control threads have been joined
[2026-04-03 06:58:58] 2026-04-03 04:57:56,659 | INFO     | [job] retrieve thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:56,660 | INFO     | [job] queue monitor thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:56,701 | INFO     | all job control threads have been joined
[2026-04-03 06:58:58] 2026-04-03 04:57:56,706 | INFO     | [payload] failed_post thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,018 | INFO     | [job] job monitor thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,023 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,079 | INFO     | all payload control threads have been joined
[2026-04-03 06:58:58] 2026-04-03 04:57:57,105 | INFO     | [data] control thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,222 | INFO     | [payload] execute_payloads thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-03 06:58:58] 2026-04-03 04:57:57,614 | INFO     | [job] validate thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,654 | INFO     | [job] create_data_payload thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,660 | INFO     | [data] copytool_out thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,679 | INFO     | [payload] validate_pre thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,706 | INFO     | [job] control thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,748 | INFO     | [payload] validate_post thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:57,750 | INFO     | [data] copytool_in thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:57:58,085 | INFO     | [payload] control thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:58:01,272 | INFO     | [data] queue_monitor thread has finished
[2026-04-03 06:58:58] 2026-04-03 04:58:25,150 | INFO     | PID=3163445 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-03 06:58:58] 2026-04-03 04:58:25,151 | INFO     | .. there are 2 such processes running
[2026-04-03 06:58:58] 2026-04-03 04:58:25,151 | INFO     | found 0 job(s) in 20 queues
[2026-04-03 06:58:58] 2026-04-03 04:58:25,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-03 06:58:58] 2026-04-03 04:58:25,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-03 06:58:58] 2026-04-03 04:58:51,358 | INFO     | [monitor] cgroup control has ended
[2026-04-03 06:58:58] 2026-04-03 04:58:53,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22783338305344)>', '<ExcThread(monitor, started 22783085233920)>']
[2026-04-03 06:58:58] 2026-04-03 04:58:54,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-03 06:58:58] 2026-04-03 04:58:54,294 | INFO     | [monitor] control thread has ended
[2026-04-03 06:58:58] 2026-04-03 04:58:58,470 | INFO     | all workflow threads have been joined
[2026-04-03 06:58:58] 2026-04-03 04:58:58,471 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-03 06:58:58] 2026-04-03 04:58:58,471 | INFO     | traces error code: 0
[2026-04-03 06:58:58] 2026-04-03 04:58:58,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-03 06:58:58] 2026-04-03 04:58:58,567 [wrapper] ==== pilot stdout END ====
[2026-04-03 06:58:58] 2026-04-03 04:58:58,569 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-03 06:58:58] 2026-04-03 04:58:58,570 [wrapper] pilotpid: 3163445
[2026-04-03 06:58:58] 2026-04-03 04:58:58,570 [wrapper] Pilot exit status: 0
[2026-04-03 06:58:58] 2026-04-03 04:58:58,576 [wrapper] pandaids: 7065656981
[2026-04-03 06:58:58] 2026-04-03 04:58:58,636 [wrapper] cleanup supervisor_pilot 3202676 3163446
[2026-04-03 06:58:58] 2026-04-03 04:58:58,637 [wrapper] Test setup, not cleaning
[2026-04-03 06:58:58] 2026-04-03 04:58:58,638 [wrapper] apfmon messages muted
[2026-04-03 06:58:58] 2026-04-03 04:58:58,639 [wrapper] ==== wrapper stdout END ====
[2026-04-03 06:58:58] 2026-04-03 04:58:58,640 [wrapper] ==== wrapper stderr END ====
[2026-04-03 06:58:58]  *** Error codes and diagnostics ***
[2026-04-03 06:58:58]     "exeErrorCode": 0,
[2026-04-03 06:58:58]     "exeErrorDiag": "",
[2026-04-03 06:58:58]     "pilotErrorCode": 0,
[2026-04-03 06:58:58]     "pilotErrorDiag": "",
[2026-04-03 06:58:58]  *** Listing of results directory ***
[2026-04-03 06:58:58] total 614788
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc    585013 Mar 28 18:13 pilot3.tar.gz
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc      5118 Mar 28 18:14 queuedata.json
[2026-04-03 06:58:58] -rwx------. 1 boinc boinc     36322 Mar 28 18:14 runpilot2-wrapper.sh
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc       100 Apr  3 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-03 06:58:58] -rwxr-xr-x. 1 boinc boinc      7986 Apr  3 06:38 run_atlas
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc       105 Apr  3 06:38 job.xml
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc     15845 Apr  3 06:38 start_atlas.sh
[2026-04-03 06:58:58] drwxrwx--x. 2 boinc boinc      4096 Apr  3 06:38 shared
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc    597537 Apr  3 06:38 input.tar.gz
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc      6707 Apr  3 06:38 init_data.xml
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc 440136303 Apr  3 06:38 EVNT.46701403._001850.pool.root.1
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc         0 Apr  3 06:38 boinc_lockfile
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc      2564 Apr  3 06:38 pandaJob.out
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc   1005167 Apr  3 06:38 agis_schedconf.cvmfs.json
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc   1511579 Apr  3 06:38 agis_ddmendpoints.agis.ALL.json
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc       443 Apr  3 06:38 workernode_map.json
[2026-04-03 06:58:58] drwx------. 5 boinc boinc      4096 Apr  3 06:38 pilot3
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc 184312026 Apr  3 06:57 HITS.48955010._054074.pool.root.1
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc      1020 Apr  3 06:57 memory_monitor_summary.json
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc       530 Apr  3 06:57 boinc_task_state.xml
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc    362311 Apr  3 06:57 log.48955010._054074.job.log.tgz.1
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc      6360 Apr  3 06:57 heartbeat.json
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc        95 Apr  3 06:58 pilot_heartbeat.json
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc        27 Apr  3 06:58 wrapper_checkpoint.txt
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc      8192 Apr  3 06:58 boinc_mmap_file
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc      5015 Apr  3 06:58 pilotlog.txt
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc    213849 Apr  3 06:58 log.48955010._054074.job.log.1
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc       357 Apr  3 06:58 output.list
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc       620 Apr  3 06:58 runtime_log
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc    593920 Apr  3 06:58 result.tar.gz
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc      9206 Apr  3 06:58 runtime_log.err
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc       656 Apr  3 06:58 9IYKDmcQmQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmssKKDmj7FpVm.diag
[2026-04-03 06:58:58] -rw-r--r--. 1 boinc boinc     21351 Apr  3 06:58 stderr.txt
[2026-04-03 06:58:58] HITS file was successfully produced:
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc 184312026 Apr  3 06:57 shared/HITS.pool.root.1
[2026-04-03 06:58:58]  *** Contents of shared directory: ***
[2026-04-03 06:58:58] total 611008
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc     15845 Apr  3 06:38 start_atlas.sh
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc    597537 Apr  3 06:38 input.tar.gz
[2026-04-03 06:58:58] -rw-r--r--. 2 boinc boinc 440136303 Apr  3 06:38 ATLAS.root_0
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc 184312026 Apr  3 06:57 HITS.pool.root.1
[2026-04-03 06:58:58] -rw-------. 1 boinc boinc    593920 Apr  3 06:58 result.tar.gz
06:59:00 (3158446): run_atlas exited; CPU time 11438.291357
06:59:00 (3158446): called boinc_finish(0)

</stderr_txt>
]]>

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