Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:23:13 (1758088): wrapper (7.7.26015): starting
15:23:13 (1758088): wrapper: running run_atlas (--nthreads 4)
[2026-03-29 15:23:13] Arguments: --nthreads 4
[2026-03-29 15:23:13] Threads: 4
[2026-03-29 15:23:13] Checking for CVMFS
[2026-03-29 15:23:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 15:23:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 15:23:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 15:23:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 15:23:14] 2.9.2.0 1501249 2195 83944 157843 0 50 32087795 36864000 0 130560 0 839212 99.981 82367 21277 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 15:23:14] CVMFS is ok
[2026-03-29 15:23:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 15:23:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 15:23:14] Further information can be found at the LHC@home message board.
[2026-03-29 15:23:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 15:23:14] Checking for apptainer binary...
[2026-03-29 15:23:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 15:23:14] Running /usr/bin/apptainer --version
[2026-03-29 15:23:14] apptainer version 1.4.1-1.1
[2026-03-29 15:23:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 15:23:14] thA314
[2026-03-29 15:23:14] apptainer works
[2026-03-29 15:23:14] Set ATHENA_PROC_NUMBER=4
[2026-03-29 15:23:14] Set ATHENA_CORE_NUMBER=4
[2026-03-29 15:23:14] Starting ATLAS job with PandaID=7066749490
[2026-03-29 15:23:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 16:53:53]  *** The last 200 lines of the pilot log: ***
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | job 7066749490 has completed (purged errors)
[2026-03-29 16:53:53] 2026-03-29 14:53:21,456 | INFO     | overall cleanup function is called
[2026-03-29 16:53:53] 2026-03-29 14:53:22,463 | INFO     | --- collectZombieJob: --- 10, [1766737]
[2026-03-29 16:53:53] 2026-03-29 14:53:22,463 | INFO     | zombie collector waiting for pid 1766737
[2026-03-29 16:53:53] 2026-03-29 14:53:22,463 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 16:53:53] 2026-03-29 14:53:22,463 | INFO     | collected zombie processes
[2026-03-29 16:53:53] 2026-03-29 14:53:22,463 | INFO     | will attempt to kill all subprocesses of pid=1766737
[2026-03-29 16:53:53] 2026-03-29 14:53:22,512 | INFO     | process IDs to be killed: [1766737] (in reverse order)
[2026-03-29 16:53:53] 2026-03-29 14:53:22,548 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 16:53:53] 2026-03-29 14:53:22,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 16:53:53] 2026-03-29 14:53:22,550 | INFO     | did not find any defunct processes belonging to 1766737
[2026-03-29 16:53:53] 2026-03-29 14:53:22,552 | INFO     | did not find any defunct processes belonging to 1766737
[2026-03-29 16:53:53] 2026-03-29 14:53:22,552 | INFO     | ready for new job
[2026-03-29 16:53:53] 2026-03-29 14:53:22,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 16:53:53] 2026-03-29 14:53:22,553 | INFO     | **************************************
[2026-03-29 16:53:53] 2026-03-29 14:53:22,553 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 16:53:53] 2026-03-29 14:53:22,553 | INFO     | **************************************
[2026-03-29 16:53:53] 2026-03-29 14:53:22,553 | INFO     | 
[2026-03-29 16:53:53] 2026-03-29 14:53:22,554 | INFO     | architecture information:
[2026-03-29 16:53:53] 2026-03-29 14:53:22,554 | INFO     | executing command: cat /etc/os-release
[2026-03-29 16:53:53] 2026-03-29 14:53:22,568 | INFO     | cat /etc/os-release:
[2026-03-29 16:53:53] NAME="CentOS Linux"
[2026-03-29 16:53:53] VERSION="7 (Core)"
[2026-03-29 16:53:53] ID="centos"
[2026-03-29 16:53:53] ID_LIKE="rhel fedora"
[2026-03-29 16:53:53] VERSION_ID="7"
[2026-03-29 16:53:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 16:53:53] ANSI_COLOR="0;31"
[2026-03-29 16:53:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 16:53:53] HOME_URL="https://www.centos.org/"
[2026-03-29 16:53:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 16:53:53] 
[2026-03-29 16:53:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 16:53:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 16:53:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 16:53:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 16:53:53] 
[2026-03-29 16:53:53] 2026-03-29 14:53:22,569 | INFO     | **************************************
[2026-03-29 16:53:53] 2026-03-29 14:53:22,840 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-29 16:53:53] 2026-03-29 14:53:23,072 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | INFO     | sufficient remaining disk space (226473541632 B)
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | INFO     | update_server=False
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 16:53:53] 2026-03-29 14:53:23,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 16:53:53] 2026-03-29 14:53:23,363 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-29 16:53:53] 2026-03-29 14:53:23,363 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-29 16:53:53] 2026-03-29 14:53:23,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 16:53:53] 2026-03-29 14:53:23,363 | INFO     | will abort loop
[2026-03-29 16:53:53] 2026-03-29 14:53:23,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 16:53:53] 2026-03-29 14:53:23,923 | INFO     | all payload control threads have been joined
[2026-03-29 16:53:53] 2026-03-29 14:53:23,973 | INFO     | all data control threads have been joined
[2026-03-29 16:53:53] 2026-03-29 14:53:24,096 | INFO     | [job] queue monitor thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,096 | INFO     | [job] retrieve thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,188 | INFO     | [payload] validate_post thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,369 | INFO     | [job] job monitor thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,446 | INFO     | all job control threads have been joined
[2026-03-29 16:53:53] 2026-03-29 14:53:24,862 | INFO     | [payload] failed_post thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,929 | INFO     | [payload] control thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:24,978 | INFO     | [data] control thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,194 | INFO     | [job] validate thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,251 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,278 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,342 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,389 | INFO     | [data] copytool_out thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,452 | INFO     | [job] control thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,480 | INFO     | [data] copytool_in thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:25,552 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:26,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 16:53:53] 2026-03-29 14:53:30,190 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 16:53:53] 2026-03-29 14:53:33,752 | INFO     | [monitor] cgroup control has ended
[2026-03-29 16:53:53] 2026-03-29 14:53:35,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448882296640)>', '<ExcThread(monitor, started 140448072967936)>']
[2026-03-29 16:53:53] 2026-03-29 14:53:40,396 | INFO     | all workflow threads have been joined
[2026-03-29 16:53:53] 2026-03-29 14:53:40,397 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 16:53:53] 2026-03-29 14:53:40,397 | INFO     | traces error code: 0
[2026-03-29 16:53:53] 2026-03-29 14:53:40,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | INFO     | PID=1762206 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 16:53:53] 2026-03-29 14:53:53,562 | INFO     | [monitor] control thread has ended
[2026-03-29 16:53:53] 2026-03-29 14:53:53,639 [wrapper] ==== pilot stdout END ====
[2026-03-29 16:53:53] 2026-03-29 14:53:53,643 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 16:53:53] 2026-03-29 14:53:53,647 [wrapper] pilotpid: 1762206
[2026-03-29 16:53:53] 2026-03-29 14:53:53,651 [wrapper] Pilot exit status: 0
[2026-03-29 16:53:53] 2026-03-29 14:53:53,664 [wrapper] pandaids: 7066749490
[2026-03-29 16:53:53] 2026-03-29 14:53:53,687 [wrapper] cleanup supervisor_pilot 1773424 1762207
[2026-03-29 16:53:53] 2026-03-29 14:53:53,691 [wrapper] Test setup, not cleaning
[2026-03-29 16:53:53] 2026-03-29 14:53:53,695 [wrapper] apfmon messages muted
[2026-03-29 16:53:53] 2026-03-29 14:53:53,699 [wrapper] ==== wrapper stdout END ====
[2026-03-29 16:53:53] 2026-03-29 14:53:53,703 [wrapper] ==== wrapper stderr END ====
[2026-03-29 16:53:53]  *** Error codes and diagnostics ***
[2026-03-29 16:53:53]     "exeErrorCode": 0,
[2026-03-29 16:53:53]     "exeErrorDiag": "",
[2026-03-29 16:53:53]     "pilotErrorCode": 0,
[2026-03-29 16:53:53]     "pilotErrorDiag": "",
[2026-03-29 16:53:53]  *** Listing of results directory ***
[2026-03-29 16:53:53] total 407240
[2026-03-29 16:53:53] -rwx------ 1 boinc boinc     36322 Mar 28 16:51 runpilot2-wrapper.sh
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc    585013 Mar 28 16:51 pilot3.tar.gz
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc      5118 Mar 28 16:52 queuedata.json
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc       100 Mar 29 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 16:53:53] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 15:23 run_atlas
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc       105 Mar 29 15:23 job.xml
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc 212109278 Mar 29 15:23 EVNT.48967083._001024.pool.root.1
[2026-03-29 16:53:53] drwxrwx--x 2 boinc boinc      4096 Mar 29 15:23 shared
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc    597527 Mar 29 15:23 input.tar.gz
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc     15845 Mar 29 15:23 start_atlas.sh
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc         0 Mar 29 15:23 boinc_setup_complete
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc      6376 Mar 29 15:23 init_data.xml
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc         0 Mar 29 15:23 boinc_lockfile
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc      2564 Mar 29 15:23 pandaJob.out
[2026-03-29 16:53:53] -rw------- 1 boinc boinc   1003389 Mar 29 15:23 agis_schedconf.cvmfs.json
[2026-03-29 16:53:53] -rw------- 1 boinc boinc   1511579 Mar 29 15:23 agis_ddmendpoints.agis.ALL.json
[2026-03-29 16:53:53] -rw------- 1 boinc boinc       427 Mar 29 15:23 workernode_map.json
[2026-03-29 16:53:53] drwx------ 5 boinc boinc      4096 Mar 29 15:23 pilot3
[2026-03-29 16:53:53] -rw------- 1 boinc boinc 198890213 Mar 29 16:52 HITS.48967085._028161.pool.root.1
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc       529 Mar 29 16:53 boinc_task_state.xml
[2026-03-29 16:53:53] -rw------- 1 boinc boinc      1022 Mar 29 16:53 memory_monitor_summary.json
[2026-03-29 16:53:53] -rw------- 1 boinc boinc    262590 Mar 29 16:53 log.48967085._028161.job.log.tgz.1
[2026-03-29 16:53:53] -rw------- 1 boinc boinc      6315 Mar 29 16:53 heartbeat.json
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc      8192 Mar 29 16:53 boinc_mmap_file
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc        27 Mar 29 16:53 wrapper_checkpoint.txt
[2026-03-29 16:53:53] -rw------- 1 boinc boinc       747 Mar 29 16:53 pilotlog.txt
[2026-03-29 16:53:53] -rw------- 1 boinc boinc        95 Mar 29 16:53 pilot_heartbeat.json
[2026-03-29 16:53:53] -rw------- 1 boinc boinc    784918 Mar 29 16:53 log.48967085._028161.job.log.1
[2026-03-29 16:53:53] -rw------- 1 boinc boinc       357 Mar 29 16:53 output.list
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc       620 Mar 29 16:53 runtime_log
[2026-03-29 16:53:53] -rw------- 1 boinc boinc   1064960 Mar 29 16:53 result.tar.gz
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc      8896 Mar 29 16:53 runtime_log.err
[2026-03-29 16:53:53] -rw------- 1 boinc boinc       657 Mar 29 16:53 3ffNDmA8kQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmNgKKDmKvQvPo.diag
[2026-03-29 16:53:53] -rw-r--r-- 1 boinc boinc     12674 Mar 29 16:53 stderr.txt
[2026-03-29 16:53:53] HITS file was successfully produced:
[2026-03-29 16:53:53] -rw------- 1 boinc boinc 198890213 Mar 29 16:52 shared/HITS.pool.root.1
[2026-03-29 16:53:53]  *** Contents of shared directory: ***
[2026-03-29 16:53:53] total 403016
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc 212109278 Mar 29 15:23 ATLAS.root_0
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc    597527 Mar 29 15:23 input.tar.gz
[2026-03-29 16:53:53] -rw-r--r-- 2 boinc boinc     15845 Mar 29 15:23 start_atlas.sh
[2026-03-29 16:53:53] -rw------- 1 boinc boinc 198890213 Mar 29 16:52 HITS.pool.root.1
[2026-03-29 16:53:53] -rw------- 1 boinc boinc   1064960 Mar 29 16:53 result.tar.gz
16:53:55 (1758088): run_atlas exited; CPU time 20028.127453
16:53:55 (1758088): called boinc_finish(0)

</stderr_txt>
]]>

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