Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:30:54 (3444039): wrapper (7.7.26015): starting
15:30:54 (3444039): wrapper: running run_atlas (--nthreads 2)
[2026-03-29 15:30:54] Arguments: --nthreads 2
[2026-03-29 15:30:54] Threads: 2
[2026-03-29 15:30:54] Checking for CVMFS
[2026-03-29 15:30:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-29 15:30:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-29 15:30:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-29 15:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-29 15:30:57] 2.9.2.0 3274070 2006 55144 157843 1 50 27539843 36864000 0 130560 0 407231 99.963 77981 18422 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-29 15:30:57] CVMFS is ok
[2026-03-29 15:30:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 15:30:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 15:30:57] Further information can be found at the LHC@home message board.
[2026-03-29 15:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 15:30:57] Checking for apptainer binary...
[2026-03-29 15:30:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-29 15:30:57] Running /usr/bin/apptainer --version
[2026-03-29 15:30:57] apptainer version 1.4.1-1.1
[2026-03-29 15:30:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 15:30:57] atlasA219
[2026-03-29 15:30:57] apptainer works
[2026-03-29 15:30:57] Set ATHENA_PROC_NUMBER=2
[2026-03-29 15:30:57] Set ATHENA_CORE_NUMBER=2
[2026-03-29 15:30:57] Starting ATLAS job with PandaID=7065656085
[2026-03-29 15:30:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 18:20:27]  *** The last 200 lines of the pilot log: ***
[2026-03-29 18:20:27] 2026-03-29 16:19:37,820 | INFO     | job 7065656085 has completed (purged errors)
[2026-03-29 18:20:27] 2026-03-29 16:19:37,820 | INFO     | overall cleanup function is called
[2026-03-29 18:20:27] 2026-03-29 16:19:38,826 | INFO     | --- collectZombieJob: --- 10, [3452484]
[2026-03-29 18:20:27] 2026-03-29 16:19:38,826 | INFO     | zombie collector waiting for pid 3452484
[2026-03-29 18:20:27] 2026-03-29 16:19:38,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 18:20:27] 2026-03-29 16:19:38,826 | INFO     | collected zombie processes
[2026-03-29 18:20:27] 2026-03-29 16:19:38,826 | INFO     | will attempt to kill all subprocesses of pid=3452484
[2026-03-29 18:20:27] 2026-03-29 16:19:38,865 | INFO     | process IDs to be killed: [3452484] (in reverse order)
[2026-03-29 18:20:27] 2026-03-29 16:19:38,890 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 18:20:27] 2026-03-29 16:19:38,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 18:20:27] 2026-03-29 16:19:38,892 | INFO     | did not find any defunct processes belonging to 3452484
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | did not find any defunct processes belonging to 3452484
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | ready for new job
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | **************************************
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | **************************************
[2026-03-29 18:20:27] 2026-03-29 16:19:38,893 | INFO     | 
[2026-03-29 18:20:27] 2026-03-29 16:19:38,894 | INFO     | architecture information:
[2026-03-29 18:20:27] 2026-03-29 16:19:38,894 | INFO     | executing command: cat /etc/os-release
[2026-03-29 18:20:27] 2026-03-29 16:19:38,904 | INFO     | cat /etc/os-release:
[2026-03-29 18:20:27] NAME="CentOS Linux"
[2026-03-29 18:20:27] VERSION="7 (Core)"
[2026-03-29 18:20:27] ID="centos"
[2026-03-29 18:20:27] ID_LIKE="rhel fedora"
[2026-03-29 18:20:27] VERSION_ID="7"
[2026-03-29 18:20:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 18:20:27] ANSI_COLOR="0;31"
[2026-03-29 18:20:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 18:20:27] HOME_URL="https://www.centos.org/"
[2026-03-29 18:20:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 18:20:27] 
[2026-03-29 18:20:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 18:20:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 18:20:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 18:20:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 18:20:27] 
[2026-03-29 18:20:27] 2026-03-29 16:19:38,904 | INFO     | **************************************
[2026-03-29 18:20:27] 2026-03-29 16:19:39,406 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-29 18:20:27] 2026-03-29 16:19:39,416 | INFO     | sufficient remaining disk space (181780086784 B)
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | INFO     | update_server=False
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 18:20:27] 2026-03-29 16:19:39,417 | INFO     | aborting loop
[2026-03-29 18:20:27] 2026-03-29 16:19:39,758 | INFO     | all job control threads have been joined
[2026-03-29 18:20:27] 2026-03-29 16:19:40,244 | INFO     | all data control threads have been joined
[2026-03-29 18:20:27] 2026-03-29 16:19:40,422 | INFO     | [job] retrieve thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:40,422 | INFO     | [job] queue monitor thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:40,422 | INFO     | [job] job monitor thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:40,465 | INFO     | all payload control threads have been joined
[2026-03-29 18:20:27] 2026-03-29 16:19:40,524 | INFO     | [data] copytool_in thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:40,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 18:20:27] 2026-03-29 16:19:40,763 | INFO     | [job] control thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,040 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,094 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,249 | INFO     | [data] control thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,279 | INFO     | [payload] validate_post thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,470 | INFO     | [payload] control thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,661 | INFO     | [job] validate thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,784 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,860 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:41,920 | INFO     | [payload] failed_post thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:42,758 | INFO     | [data] copytool_out thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:19:43,422 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 18:20:27] 2026-03-29 16:20:08,957 | INFO     | PID=3448067 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 18:20:27] 2026-03-29 16:20:08,957 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 18:20:27] 2026-03-29 16:20:08,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 18:20:27] 2026-03-29 16:20:08,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 18:20:27] 2026-03-29 16:20:21,387 | INFO     | [monitor] cgroup control has ended
[2026-03-29 18:20:27] 2026-03-29 16:20:22,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140259106494272)>', '<ExcThread(monitor, started 140258389780224)>']
[2026-03-29 18:20:27] 2026-03-29 16:20:23,027 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 18:20:27] 2026-03-29 16:20:23,027 | INFO     | [monitor] control thread has ended
[2026-03-29 18:20:27] 2026-03-29 16:20:27,251 | INFO     | all workflow threads have been joined
[2026-03-29 18:20:27] 2026-03-29 16:20:27,251 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 18:20:27] 2026-03-29 16:20:27,251 | INFO     | traces error code: 0
[2026-03-29 18:20:27] 2026-03-29 16:20:27,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 18:20:27] 2026-03-29 16:20:27,293 [wrapper] ==== pilot stdout END ====
[2026-03-29 18:20:27] 2026-03-29 16:20:27,296 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 18:20:27] 2026-03-29 16:20:27,299 [wrapper] pilotpid: 3448067
[2026-03-29 18:20:27] 2026-03-29 16:20:27,302 [wrapper] Pilot exit status: 0
[2026-03-29 18:20:27] 2026-03-29 16:20:27,309 [wrapper] pandaids: 7065656085
[2026-03-29 18:20:27] 2026-03-29 16:20:27,326 [wrapper] cleanup supervisor_pilot 3463358 3448068
[2026-03-29 18:20:27] 2026-03-29 16:20:27,329 [wrapper] Test setup, not cleaning
[2026-03-29 18:20:27] 2026-03-29 16:20:27,331 [wrapper] apfmon messages muted
[2026-03-29 18:20:27] 2026-03-29 16:20:27,334 [wrapper] ==== wrapper stdout END ====
[2026-03-29 18:20:27] 2026-03-29 16:20:27,336 [wrapper] ==== wrapper stderr END ====
[2026-03-29 18:20:27]  *** Error codes and diagnostics ***
[2026-03-29 18:20:27]     "exeErrorCode": 0,
[2026-03-29 18:20:27]     "exeErrorDiag": "",
[2026-03-29 18:20:27]     "pilotErrorCode": 0,
[2026-03-29 18:20:27]     "pilotErrorDiag": "",
[2026-03-29 18:20:27]  *** Listing of results directory ***
[2026-03-29 18:20:27] total 559676
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc    585013 Mar 28 15:05 pilot3.tar.gz
[2026-03-29 18:20:27] -rwx------ 1 boinc boinc     36322 Mar 28 15:08 runpilot2-wrapper.sh
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc      5118 Mar 28 15:09 queuedata.json
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc       100 Mar 29 15:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 18:20:27] -rwxr-xr-x 1 boinc boinc      7986 Mar 29 15:30 run_atlas
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc       105 Mar 29 15:30 job.xml
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc 323809201 Mar 29 15:30 EVNT.48997945._000102.pool.root.1
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc    597545 Mar 29 15:30 input.tar.gz
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc     15845 Mar 29 15:30 start_atlas.sh
[2026-03-29 18:20:27] drwxrwx--x 2 boinc boinc      4096 Mar 29 15:30 shared
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc         0 Mar 29 15:30 boinc_setup_complete
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc      6207 Mar 29 15:30 init_data.xml
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc         0 Mar 29 15:30 boinc_lockfile
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc      2572 Mar 29 15:30 pandaJob.out
[2026-03-29 18:20:27] -rw------- 1 boinc boinc   1003389 Mar 29 15:31 agis_schedconf.cvmfs.json
[2026-03-29 18:20:27] -rw------- 1 boinc boinc   1511579 Mar 29 15:31 agis_ddmendpoints.agis.ALL.json
[2026-03-29 18:20:27] -rw------- 1 boinc boinc       421 Mar 29 15:31 workernode_map.json
[2026-03-29 18:20:27] drwx------ 5 boinc boinc      4096 Mar 29 15:31 pilot3
[2026-03-29 18:20:27] -rw------- 1 boinc boinc 241917006 Mar 29 18:19 HITS.48997948._003206.pool.root.1
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc       530 Mar 29 18:19 boinc_task_state.xml
[2026-03-29 18:20:27] -rw------- 1 boinc boinc      1013 Mar 29 18:19 memory_monitor_summary.json
[2026-03-29 18:20:27] -rw------- 1 boinc boinc    299440 Mar 29 18:19 log.48997948._003206.job.log.tgz.1
[2026-03-29 18:20:27] -rw------- 1 boinc boinc      6292 Mar 29 18:19 heartbeat.json
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc      8192 Mar 29 18:20 boinc_mmap_file
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc        28 Mar 29 18:20 wrapper_checkpoint.txt
[2026-03-29 18:20:27] -rw------- 1 boinc boinc        95 Mar 29 18:20 pilot_heartbeat.json
[2026-03-29 18:20:27] -rw------- 1 boinc boinc      4748 Mar 29 18:20 pilotlog.txt
[2026-03-29 18:20:27] -rw------- 1 boinc boinc   1433496 Mar 29 18:20 log.48997948._003206.job.log.1
[2026-03-29 18:20:27] -rw------- 1 boinc boinc       357 Mar 29 18:20 output.list
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc       620 Mar 29 18:20 runtime_log
[2026-03-29 18:20:27] -rw------- 1 boinc boinc   1751040 Mar 29 18:20 result.tar.gz
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc      8912 Mar 29 18:20 runtime_log.err
[2026-03-29 18:20:27] -rw------- 1 boinc boinc       664 Mar 29 18:20 fcJODmVWjQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmReKKDmYo5jen.diag
[2026-03-29 18:20:27] -rw-r--r-- 1 boinc boinc     10810 Mar 29 18:20 stderr.txt
[2026-03-29 18:20:27] HITS file was successfully produced:
[2026-03-29 18:20:27] -rw------- 1 boinc boinc 241917006 Mar 29 18:19 shared/HITS.pool.root.1
[2026-03-29 18:20:27]  *** Contents of shared directory: ***
[2026-03-29 18:20:27] total 554784
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc 323809201 Mar 29 15:30 ATLAS.root_0
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc    597545 Mar 29 15:30 input.tar.gz
[2026-03-29 18:20:27] -rw-r--r-- 2 boinc boinc     15845 Mar 29 15:30 start_atlas.sh
[2026-03-29 18:20:27] -rw------- 1 boinc boinc 241917006 Mar 29 18:19 HITS.pool.root.1
[2026-03-29 18:20:27] -rw------- 1 boinc boinc   1751040 Mar 29 18:20 result.tar.gz
18:20:28 (3444039): run_atlas exited; CPU time 19648.620019
18:20:28 (3444039): called boinc_finish(0)

</stderr_txt>
]]>

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