Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-28 18:08:35 (35912): vboxwrapper version 26210
2026-03-28 18:08:35 (35912): BOINC client version: 8.2.4
2026-03-28 18:08:42 (35912): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2026-03-28 18:08:43 (35912): Successfully copied 'init_data.xml' to the shared directory.
2026-03-28 18:08:44 (35912): Create VM. (boinc_f18c32297bd51cf5, slot#0)
2026-03-28 18:08:45 (35912): Setting Memory Size for VM. (4200MB)
2026-03-28 18:08:45 (35912): Setting CPU Count for VM. (2)
2026-03-28 18:08:46 (35912): Setting Chipset Options for VM.
2026-03-28 18:08:46 (35912): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-28 18:08:46 (35912): Setting Boot Options for VM.
2026-03-28 18:08:47 (35912): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-28 18:08:48 (35912): Enabling VM Network Access.
2026-03-28 18:08:48 (35912): Disabling USB Support for VM.
2026-03-28 18:08:48 (35912): Disabling COM Port Support for VM.
2026-03-28 18:08:49 (35912): Disabling LPT Port Support for VM.
2026-03-28 18:08:49 (35912): Disabling Audio Support for VM.
2026-03-28 18:08:50 (35912): Disabling Clipboard Support for VM.
2026-03-28 18:08:50 (35912): Disabling Drag and Drop Support for VM.
2026-03-28 18:08:50 (35912): Adding storage controller(s) to VM.
2026-03-28 18:08:51 (35912): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-28 18:08:56 (35912): Adding VirtualBox Guest Additions to VM.
2026-03-28 18:08:57 (35912): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-28 18:08:58 (35912): forwarding host port 49705 to guest port 80
2026-03-28 18:08:58 (35912): Enabling remote desktop for VM.
2026-03-28 18:08:58 (35912): Required extension pack not installed, remote desktop not enabled.
2026-03-28 18:08:58 (35912): Enabling shared directory for VM.
2026-03-28 18:08:59 (35912): Starting VM using VBoxManage interface. (boinc_f18c32297bd51cf5, slot#0)
2026-03-28 18:09:16 (35912): Successfully started VM. (PID = '29588')
2026-03-28 18:09:16 (35912): Reporting VM Process ID to BOINC.
2026-03-28 18:09:16 (35912): Guest Log: BIOS: VirtualBox 7.2.2
2026-03-28 18:09:16 (35912): Guest Log: CPUID EDX: 0x178bfbff
2026-03-28 18:09:16 (35912): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-28 18:09:16 (35912): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-28 18:09:16 (35912): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-28 18:09:16 (35912): Detected: Web Application Enabled (http://localhost:49705)
2026-03-28 18:09:16 (35912): Preference change detected
2026-03-28 18:09:16 (35912): Setting CPU throttle for VM. (100%)
2026-03-28 18:09:17 (35912): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-28 18:09:18 (35912): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-28 18:09:18 (35912): Guest Log: BIOS: Booting from Hard Disk...
2026-03-28 18:09:22 (35912): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-28 18:09:22 (35912): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-28 18:09:22 (35912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-28 18:09:47 (35912): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-28 18:09:47 (35912): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-28 18:10:42 (35912): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.001636 main     Log opened 2026-03-28T18:10:40.843182000Z
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002206 main     OS Product: Linux
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002296 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002396 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002446 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002448 main     Process ID: 1265
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.002449 main     Package type: LINUX_64BITS_GENERIC
2026-03-28 18:10:42 (35912): Guest Log: 00:00:00.005100 main     5.2.32 r132073 started. Verbose level = 0
2026-03-28 18:10:43 (35912): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-28 18:10:43 (35912): Guest Log: [INFO] Mounting shared directory
2026-03-28 18:10:44 (35912): Guest Log: [INFO] Checking for init_data.xml
2026-03-28 18:10:52 (35912): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-28 18:10:52 (35912): Guest Log: [INFO] Detected branch: prod
2026-03-28 18:10:52 (35912): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-28 18:10:52 (35912): Guest Log: Copying input files
2026-03-28 18:10:53 (35912): Guest Log: 00:00:10.036404 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 561 961 000ns (GuestNow=1 774 717 852 303 907 000 ns GuestLast=1 774 721 440 865 868 000 ns fSetTimeLastLoop=true )
2026-03-28 18:11:05 (35912): Guest Log: Copied input files into RunAtlas.
2026-03-28 18:11:06 (35912): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-28 18:11:06 (35912): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-28 18:11:06 (35912): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-28 18:11:06 (35912): Guest Log: Further information can be found at the LHC@home message board.
2026-03-28 18:11:18 (35912): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-28 18:11:18 (35912): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-28 18:11:18 (35912): Guest Log: 2.6.3.0 1537 0 32044 157806 4 1 3117755 4096001 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-03-28 18:11:31 (35912): Guest Log: copied the webapp to /var/www
2026-03-28 18:11:31 (35912): Guest Log: ATHENA_PROC_NUMBER=2
2026-03-28 18:11:31 (35912): Guest Log: ATHENA_CORE_NUMBER=2
2026-03-28 18:11:35 (35912): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-28 18:11:35 (35912): Guest Log:  *** Starting ATLAS job. (PandaID=7072009509 taskID=49182076) ***
2026-03-28 18:41:34 (35912): Guest Log:  *** Job finished ***
2026-03-28 18:41:34 (35912): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:08,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:08,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:33,951 | INFO     | [monitor] cgroup control has ended
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:35,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340519384896)>', '<ExcThread(monitor, started 140339188852480)>']
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:36,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:36,030 | INFO     | [monitor] control thread has ended
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:40,056 | INFO     | all workflow threads have been joined
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:40,057 | INFO     | end of generic workflow (traces error code: 0)
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:40,057 | INFO     | traces error code: 0
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:40,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-28 18:41:34 (35912): Guest Log: 2026-03-28 17:40:40,418 [wrapper] ==== pilot stdout END ====
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:40,448 [wrapper] ==== wrapper stdout RESUME ====
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:40,471 [wrapper] pilotpid: 5985
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:40,488 [wrapper] Pilot exit status: 0
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,209 [wrapper] pandaids: 7072009509
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,335 [wrapper] cleanup supervisor_pilot 24667 5986
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,355 [wrapper] Test setup, not cleaning
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,370 [wrapper] apfmon messages muted
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,384 [wrapper] ==== wrapper stdout END ====
2026-03-28 18:41:35 (35912): Guest Log: 2026-03-28 17:40:43,404 [wrapper] ==== wrapper stderr END ====
2026-03-28 18:41:35 (35912): Guest Log:  *** Error codes and diagnostics ***
2026-03-28 18:41:35 (35912): Guest Log:     "exeErrorCode": 65,
2026-03-28 18:41:35 (35912): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2026-03-28 18:41:35 (35912): Guest Log:     "pilotErrorCode": 1305,
2026-03-28 18:41:35 (35912): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2026-03-28 18:41:35 (35912): Guest Log:  *** Listing of results directory ***
2026-03-28 18:41:35 (35912): Guest Log: total 4792
2026-03-28 18:41:35 (35912): Guest Log: -rw-r--r--. 1 atlas atlas  585013 Mar 28 12:19 pilot3.tar.gz
2026-03-28 18:41:35 (35912): Guest Log: -rwx------. 1 atlas atlas   36322 Mar 28 12:22 runpilot2-wrapper.sh
2026-03-28 18:41:35 (35912): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Mar 28 12:23 queuedata.json
2026-03-28 18:41:35 (35912): Guest Log: -rwxr-xr-x. 1 atlas atlas    5627 Mar 28 17:11 init_data.xml
2026-03-28 18:41:35 (35912): Guest Log: -rwxr-xr-x. 1 atlas atlas  597566 Mar 28 17:11 input.tar.gz
2026-03-28 18:41:35 (35912): Guest Log: -rwxr-xr-x. 1 atlas atlas   15845 Mar 28 17:11 start_atlas.sh
2026-03-28 18:41:35 (35912): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 28 17:11 EVNT.49136262._000007.pool.root.1 -> /data/./ATLAS.root_0
2026-03-28 18:41:35 (35912): Guest Log: -rw-r--r--. 1 atlas atlas    2628 Mar 28 17:11 pandaJob.out
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas 1511579 Mar 28 17:18 agis_ddmendpoints.agis.ALL.json
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas     429 Mar 28 17:18 workernode_map.json
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas 1003337 Mar 28 17:19 agis_schedconf.cvmfs.json
2026-03-28 18:41:35 (35912): Guest Log: drwx------. 5 atlas atlas    4096 Mar 28 17:19 pilot3
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas   70967 Mar 28 17:37 log.49182076._000638.job.log.tgz.1
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas    6741 Mar 28 17:39 heartbeat.json
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas      95 Mar 28 17:40 pilot_heartbeat.json
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas    4987 Mar 28 17:40 pilotlog.txt
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas  457259 Mar 28 17:40 log.49182076._000638.job.log.1
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas     188 Mar 28 17:40 output.list
2026-03-28 18:41:35 (35912): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 28 17:40 runtime_log
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas  542720 Mar 28 17:40 result.tar.gz
2026-03-28 18:41:35 (35912): Guest Log: -rw-r--r--. 1 atlas atlas    8629 Mar 28 17:40 runtime_log.err
2026-03-28 18:41:35 (35912): Guest Log: -rw-------. 1 atlas atlas     658 Mar 28 17:40 HYTMDmgrhQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmJ6HKDm0x1dLo.diag
2026-03-28 18:41:35 (35912): Guest Log: Looking for outputfile HITS.49182076._000638.pool.root.1
2026-03-28 18:41:35 (35912): Guest Log: No HITS file was produced
2026-03-28 18:41:35 (35912): Guest Log: Successfully finished the ATLAS job!
2026-03-28 18:41:35 (35912): Guest Log: Copying the results back to the shared directory!
2026-03-28 18:41:35 (35912): Guest Log:  *** Contents of shared directory: ***
2026-03-28 18:41:35 (35912): Guest Log: total 222428
2026-03-28 18:41:35 (35912): Guest Log: -rwxrwxrwx. 1 root root 226597999 Mar 28 17:08 ATLAS.root_0
2026-03-28 18:41:35 (35912): Guest Log: -rwxrwxrwx. 1 root root      5627 Mar 28 17:08 init_data.xml
2026-03-28 18:41:35 (35912): Guest Log: -rwxrwxrwx. 1 root root    597566 Mar 28 16:37 input.tar.gz
2026-03-28 18:41:35 (35912): Guest Log: -rwxrwxrwx. 1 root root    542720 Mar 28 17:40 result.tar.gz
2026-03-28 18:41:35 (35912): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar 28 16:37 start_atlas.sh
2026-03-28 18:41:35 (35912): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-28 18:41:35 (35912): Guest Log: 00:30:13.184188 control  Guest control service stopped
2026-03-28 18:41:35 (35912): Guest Log: 00:30:13.911248 control  Guest control worker returned with rc=VINF_SUCCESS
2026-03-28 18:41:35 (35912): Guest Log: 00:30:13.911591 main     Session 0 is about to close ...
2026-03-28 18:41:35 (35912): Guest Log: 00:30:13.911673 main     Stopping all guest processes ...
2026-03-28 18:41:35 (35912): Guest Log: 00:30:13.911748 main     Closing all guest files ...
2026-03-28 18:41:35 (35912): Guest Log: 00:30:14.254619 main     Ended.
2026-03-28 18:41:35 (35912): VM Completion File Detected.
2026-03-28 18:41:35 (35912): Powering off VM.
2026-03-28 18:42:32 (35912): Error in poweroff VM for VM: -182
Command:
VBoxManage -q controlvm "boinc_f18c32297bd51cf5" poweroff
Output:
0%...10%...20%...30%...40%...50%...60%...70%...80%...
2026-03-28 18:42:32 (35912): VM did not power off when requested.
2026-03-28 18:42:32 (35912): VM was NOT successfully terminated.
2026-03-28 18:42:32 (35912): Deregistering VM. (boinc_f18c32297bd51cf5, slot#0)
2026-03-28 18:42:54 (35912): Removing network bandwidth throttle group from VM.
2026-03-28 18:42:57 (35912): Removing VM from VirtualBox.
2026-03-28 18:43:12 (35912): called boinc_finish(0)

</stderr_txt>
]]>

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