Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:27:45 (1552429): wrapper (7.7.26015): starting
22:27:45 (1552429): wrapper: running run_atlas (--nthreads 12)
[2026-03-29 22:27:45] Arguments: --nthreads 12
[2026-03-29 22:27:45] Threads: 12
[2026-03-29 22:27:45] Checking for CVMFS
[2026-03-29 22:27:45] No cvmfs_config command found, will try listing directly
[2026-03-29 22:27:45] CVMFS is ok
[2026-03-29 22:27:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-29 22:27:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-29 22:27:45] Further information can be found at the LHC@home message board.
[2026-03-29 22:27:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-29 22:27:45] Checking for apptainer binary...
[2026-03-29 22:27:45] which: no apptainer in ((null))
[2026-03-29 22:27:45] apptainer is not installed, using version from CVMFS
[2026-03-29 22:27:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-29 22:27:46] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-29 22:27:46] apptainer works
[2026-03-29 22:27:46] Set ATHENA_PROC_NUMBER=12
[2026-03-29 22:27:46] Set ATHENA_CORE_NUMBER=12
[2026-03-29 22:27:46] Starting ATLAS job with PandaID=7071884711
[2026-03-29 22:27:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 23:31:08]  *** The last 200 lines of the pilot log: ***
[2026-03-29 23:31:08]  filesize=386431
[2026-03-29 23:31:08]  filetype=log
[2026-03-29 23:31:08]  guid=d110425c-52d8-442b-81d8-f0be00d131c6
[2026-03-29 23:31:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-29 23:31:08]  is_altstaged=None
[2026-03-29 23:31:08]  is_tar=False
[2026-03-29 23:31:08]  lfn=log.49176627._000305.job.log.tgz.1
[2026-03-29 23:31:08]  mtime=0
[2026-03-29 23:31:08]  protocol_id=None
[2026-03-29 23:31:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-29 23:31:08]  replicas=None
[2026-03-29 23:31:08]  scope=mc23_13p6TeV
[2026-03-29 23:31:08]  status=None
[2026-03-29 23:31:08]  status_code=0
[2026-03-29 23:31:08]  storage_token=
[2026-03-29 23:31:08]  surl=/var/lib/boinc/var/slot120/slots/1/PanDA_Pilot-7071884711/log.49176627._000305.job.log.tgz.1
[2026-03-29 23:31:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/83/log.49176627._000305.job.log.tgz.1
[2026-03-29 23:31:08]  workdir=None
[2026-03-29 23:31:08] ]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,105 | INFO     | transferring file log.49176627._000305.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/1/PanDA_Pilot-7071884711/log.49176627._000305.job.log.tgz.1 to /var/lib/
[2026-03-29 23:31:08] 2026-03-29 21:30:14,105 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/1/PanDA_Pilot-7071884711/log.49176627._000305.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/1/
[2026-03-29 23:31:08] 2026-03-29 21:30:14,118 | INFO     | adding to output.list: log.49176627._000305.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/83/log.49176627._000305.job.log.tg
[2026-03-29 23:31:08] 2026-03-29 21:30:14,119 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-29 23:31:08] 2026-03-29 21:30:14,119 | INFO     | summary of transferred files:
[2026-03-29 23:31:08] 2026-03-29 21:30:14,119 | INFO     |  -- lfn=log.49176627._000305.job.log.tgz.1, status_code=0, status=transferred
[2026-03-29 23:31:08] 2026-03-29 21:30:14,119 | INFO     | stage-out finished correctly
[2026-03-29 23:31:08] 2026-03-29 21:30:14,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-29 23:31:08] 2026-03-29 21:30:14,216 | INFO     | job 7071884711 has state=finished
[2026-03-29 23:31:08] 2026-03-29 21:30:14,216 | INFO     | preparing for final server update for job 7071884711 in state='finished'
[2026-03-29 23:31:08] 2026-03-29 21:30:14,217 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/1/PanDA_Pilot-7071884711/jobReport.json
[2026-03-29 23:31:08] 2026-03-29 21:30:14,218 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/1/workernode_map.json
[2026-03-29 23:31:08] 2026-03-29 21:30:14,218 | INFO     | this job has now completed (state=finished)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,218 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,218 | INFO     | log transfer has been attempted: DONE
[2026-03-29 23:31:08] 2026-03-29 21:30:14,219 | INFO     | job 7071884711 has finished - writing final server update
[2026-03-29 23:31:08] 2026-03-29 21:30:14,219 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2005557/.job.ad'
[2026-03-29 23:31:08] 2026-03-29 21:30:14,219 | INFO     | total number of processed events: 400 (read)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,236 | INFO     | using path: /var/lib/boinc/var/slot120/slots/1/PanDA_Pilot-7071884711/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,236 | INFO     | extracted standard info from prmon json
[2026-03-29 23:31:08] 2026-03-29 21:30:14,236 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 23:31:08] 2026-03-29 21:30:14,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 23:31:08] 2026-03-29 21:30:14,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 23:31:08] 2026-03-29 21:30:14,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | fitting pss+swap vs Time
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | sum of square deviations: 48810217.5
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | sum of deviations: -442861402.9999999
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | mean x: 1774818020.5
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | mean y: 2740428.185185185
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | intersect: 16105893392.588846
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | chi2: 0.0011494966610447164
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | current memory leak: -9.07 B/s (using 54 data points, chi2=0.00)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,238 | INFO     | could have reported an average CPU frequency of 3605 MHz (6 samples)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | ..............................
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . Timing measurements:
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . get job = 0 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . initial setup = 4 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . payload setup = 6 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . stage-in = 0 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . payload execution = 3714 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . stage-out = 0 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | . log creation = 0 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,239 | INFO     | ..............................
[2026-03-29 23:31:08] 2026-03-29 21:30:14,289 | INFO     | 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,289 | INFO     | job summary report
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | --------------------------------------------------
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | PanDA job id: 7071884711
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | task id: 49176627
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | errors: (none)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | pilot state: finished 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | transexitcode: 0
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | exeerrorcode: 0
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | exeerrordiag: 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | exitcode: 0
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | exitmsg: OK
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | cpuconsumptiontime: 41426 s
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | nevents: 400
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | neventsw: 0
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | pid: 1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | pgrp: 1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | corecount: 12
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | event service: False
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | sizes: {0: 2280273, 11: 2280273, 3724: 2306124, 3725: 2315340}
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | --------------------------------------------------
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,290 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/1
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | job 7071884711 has completed (purged errors)
[2026-03-29 23:31:08] 2026-03-29 21:30:14,305 | INFO     | overall cleanup function is called
[2026-03-29 23:31:08] 2026-03-29 21:30:14,713 | INFO     | PID=1557140 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-29 23:31:08] 2026-03-29 21:30:14,714 | INFO     | .. there are 15 such processes running
[2026-03-29 23:31:08] 2026-03-29 21:30:15,313 | INFO     | --- collectZombieJob: --- 10, [1562903]
[2026-03-29 23:31:08] 2026-03-29 21:30:15,313 | INFO     | zombie collector waiting for pid 1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:15,313 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 23:31:08] 2026-03-29 21:30:15,313 | INFO     | collected zombie processes
[2026-03-29 23:31:08] 2026-03-29 21:30:15,313 | INFO     | will attempt to kill all subprocesses of pid=1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:15,630 | INFO     | process IDs to be killed: [1562903] (in reverse order)
[2026-03-29 23:31:08] 2026-03-29 21:30:15,764 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 23:31:08] 2026-03-29 21:30:15,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 23:31:08] 2026-03-29 21:30:15,787 | INFO     | did not find any defunct processes belonging to 1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:15,808 | INFO     | did not find any defunct processes belonging to 1562903
[2026-03-29 23:31:08] 2026-03-29 21:30:15,808 | INFO     | ready for new job
[2026-03-29 23:31:08] 2026-03-29 21:30:15,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 23:31:08] 2026-03-29 21:30:15,809 | INFO     | **************************************
[2026-03-29 23:31:08] 2026-03-29 21:30:15,809 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 23:31:08] 2026-03-29 21:30:15,809 | INFO     | **************************************
[2026-03-29 23:31:08] 2026-03-29 21:30:15,809 | INFO     | 
[2026-03-29 23:31:08] 2026-03-29 21:30:15,814 | INFO     | architecture information:
[2026-03-29 23:31:08] 2026-03-29 21:30:15,815 | INFO     | executing command: cat /etc/os-release
[2026-03-29 23:31:08] 2026-03-29 21:30:15,825 | INFO     | cat /etc/os-release:
[2026-03-29 23:31:08] NAME="CentOS Linux"
[2026-03-29 23:31:08] VERSION="7 (Core)"
[2026-03-29 23:31:08] ID="centos"
[2026-03-29 23:31:08] ID_LIKE="rhel fedora"
[2026-03-29 23:31:08] VERSION_ID="7"
[2026-03-29 23:31:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 23:31:08] ANSI_COLOR="0;31"
[2026-03-29 23:31:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 23:31:08] HOME_URL="https://www.centos.org/"
[2026-03-29 23:31:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 23:31:08] 
[2026-03-29 23:31:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 23:31:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 23:31:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 23:31:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 23:31:08] 
[2026-03-29 23:31:08] 2026-03-29 21:30:15,826 | INFO     | **************************************
[2026-03-29 23:31:08] 2026-03-29 21:30:16,328 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/1
[2026-03-29 23:31:08] 2026-03-29 21:30:16,341 | INFO     | sufficient remaining disk space (168085684224 B)
[2026-03-29 23:31:08] 2026-03-29 21:30:16,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 23:31:08] 2026-03-29 21:30:16,341 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 23:31:08] 2026-03-29 21:30:16,341 | INFO     | update_server=False
[2026-03-29 23:31:08] 2026-03-29 21:30:16,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 23:31:08] 2026-03-29 21:30:16,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 23:31:08] 2026-03-29 21:30:16,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 23:31:08] 2026-03-29 21:30:16,502 | INFO     | aborting loop
[2026-03-29 23:31:08] 2026-03-29 21:30:16,847 | INFO     | all data control threads have been joined
[2026-03-29 23:31:08] 2026-03-29 21:30:17,013 | INFO     | all job control threads have been joined
[2026-03-29 23:31:08] 2026-03-29 21:30:17,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 23:31:08] 2026-03-29 21:30:17,346 | INFO     | [job] retrieve thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,422 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,494 | INFO     | all payload control threads have been joined
[2026-03-29 23:31:08] 2026-03-29 21:30:17,506 | INFO     | [job] job monitor thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,824 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,851 | INFO     | [payload] validate_post thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,852 | INFO     | [data] control thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,890 | INFO     | [job] validate thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:17,968 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:18,019 | INFO     | [job] control thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:18,168 | INFO     | [data] copytool_in thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:18,500 | INFO     | [payload] control thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:18,731 | INFO     | [payload] failed_post thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:19,176 | INFO     | [data] copytool_out thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:19,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 23:31:08] 2026-03-29 21:30:20,305 | INFO     | [job] queue monitor thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:20,347 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:27,266 | INFO     | job.realtimelogging is not enabled
[2026-03-29 23:31:08] 2026-03-29 21:30:28,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 23:31:08] 2026-03-29 21:30:47,174 | INFO     | PID=1557140 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-29 23:31:08] 2026-03-29 21:30:47,174 | INFO     | .. there are 15 such processes running
[2026-03-29 23:31:08] 2026-03-29 21:30:47,174 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 23:31:08] 2026-03-29 21:30:47,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 23:31:08] 2026-03-29 21:30:47,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 23:31:08] 2026-03-29 21:31:03,396 | INFO     | [monitor] cgroup control has ended
[2026-03-29 23:31:08] 2026-03-29 21:31:03,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22449544333120)>', '<ExcThread(monitor, started 22449296238336)>']
[2026-03-29 23:31:08] 2026-03-29 21:31:04,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 23:31:08] 2026-03-29 21:31:04,259 | INFO     | [monitor] control thread has ended
[2026-03-29 23:31:08] 2026-03-29 21:31:08,459 | INFO     | all workflow threads have been joined
[2026-03-29 23:31:08] 2026-03-29 21:31:08,459 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 23:31:08] 2026-03-29 21:31:08,459 | INFO     | traces error code: 0
[2026-03-29 23:31:08] 2026-03-29 21:31:08,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 23:31:08] 2026-03-29 21:31:08,659 [wrapper] ==== pilot stdout END ====
[2026-03-29 23:31:08] 2026-03-29 21:31:08,662 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 23:31:08] 2026-03-29 21:31:08,665 [wrapper] pilotpid: 1557140
[2026-03-29 23:31:08] 2026-03-29 21:31:08,668 [wrapper] Pilot exit status: 0
[2026-03-29 23:31:08] 2026-03-29 21:31:08,677 [wrapper] pandaids: 7071884711
[2026-03-29 23:31:08] 2026-03-29 21:31:08,780 [wrapper] cleanup supervisor_pilot 1821577 1557141
[2026-03-29 23:31:08] 2026-03-29 21:31:08,783 [wrapper] Test setup, not cleaning
[2026-03-29 23:31:08] 2026-03-29 21:31:08,787 [wrapper] apfmon messages muted
[2026-03-29 23:31:08] 2026-03-29 21:31:08,789 [wrapper] ==== wrapper stdout END ====
[2026-03-29 23:31:08] 2026-03-29 21:31:08,792 [wrapper] ==== wrapper stderr END ====
[2026-03-29 23:31:08]  *** Error codes and diagnostics ***
[2026-03-29 23:31:08]     "exeErrorCode": 0,
[2026-03-29 23:31:08]     "exeErrorDiag": "",
[2026-03-29 23:31:08]     "pilotErrorCode": 0,
[2026-03-29 23:31:08]     "pilotErrorDiag": "",
[2026-03-29 23:31:08]  *** Listing of results directory ***
[2026-03-29 23:31:08] total 476916
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc    585013 Mar 28 06:04 pilot3.tar.gz
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc      5118 Mar 28 06:36 queuedata.json
[2026-03-29 23:31:08] -rwx------. 1 boinc boinc     36322 Mar 28 06:36 runpilot2-wrapper.sh
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc       100 Mar 29 22:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 23:31:08] -rwxr-xr-x. 1 boinc boinc      7986 Mar 29 22:27 run_atlas
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc       105 Mar 29 22:27 job.xml
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc     15845 Mar 29 22:27 start_atlas.sh
[2026-03-29 23:31:08] drwxrwx--x. 2 boinc boinc      4096 Mar 29 22:27 shared
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc    597550 Mar 29 22:27 input.tar.gz
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc      6712 Mar 29 22:27 init_data.xml
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc 243071568 Mar 29 22:27 EVNT.49134598._000004.pool.root.1
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc         0 Mar 29 22:27 boinc_lockfile
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc      2620 Mar 29 22:27 pandaJob.out
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc   1004063 Mar 29 22:27 agis_schedconf.cvmfs.json
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc   1511579 Mar 29 22:27 agis_ddmendpoints.agis.ALL.json
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc       444 Mar 29 22:27 workernode_map.json
[2026-03-29 23:31:08] drwx------. 5 boinc boinc      4096 Mar 29 22:27 pilot3
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc 239440549 Mar 29 23:29 HITS.49176627._000305.pool.root.1
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc       529 Mar 29 23:29 boinc_task_state.xml
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc      1027 Mar 29 23:30 memory_monitor_summary.json
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc    386431 Mar 29 23:30 log.49176627._000305.job.log.tgz.1
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc      6346 Mar 29 23:30 heartbeat.json
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc        95 Mar 29 23:30 pilot_heartbeat.json
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc      8192 Mar 29 23:30 boinc_mmap_file
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc        27 Mar 29 23:30 wrapper_checkpoint.txt
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc      4903 Mar 29 23:31 pilotlog.txt
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc    569039 Mar 29 23:31 log.49176627._000305.job.log.1
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc       357 Mar 29 23:31 output.list
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc       620 Mar 29 23:31 runtime_log
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc    972800 Mar 29 23:31 result.tar.gz
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc      9223 Mar 29 23:31 runtime_log.err
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc       663 Mar 29 23:31 ibXLDmpWbQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmy8GKDmVDfidm.diag
[2026-03-29 23:31:08] -rw-r--r--. 1 boinc boinc     21115 Mar 29 23:31 stderr.txt
[2026-03-29 23:31:08] HITS file was successfully produced:
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc 239440549 Mar 29 23:29 shared/HITS.pool.root.1
[2026-03-29 23:31:08]  *** Contents of shared directory: ***
[2026-03-29 23:31:08] total 472768
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc     15845 Mar 29 22:27 start_atlas.sh
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc    597550 Mar 29 22:27 input.tar.gz
[2026-03-29 23:31:08] -rw-r--r--. 2 boinc boinc 243071568 Mar 29 22:27 ATLAS.root_0
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc 239440549 Mar 29 23:29 HITS.pool.root.1
[2026-03-29 23:31:08] -rw-------. 1 boinc boinc    972800 Mar 29 23:31 result.tar.gz
23:31:10 (1552429): run_atlas exited; CPU time 41550.038309
23:31:10 (1552429): called boinc_finish(0)

</stderr_txt>
]]>

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