Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:52:34 (59919): wrapper (7.7.26015): starting
07:52:34 (59919): wrapper: running run_atlas (--nthreads 12)
[2026-04-04 07:52:34] Arguments: --nthreads 12
[2026-04-04 07:52:34] Threads: 12
[2026-04-04 07:52:34] Checking for CVMFS
[2026-04-04 07:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-04 07:52:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-04 07:52:35] Running cvmfs_config stat atlas.cern.ch
[2026-04-04 07:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-04 07:52:36] 2.13.3.0 3021178 14479 72404 158069 1 228 3778051 4096000 17565 130560 0 65643943 99.984 917510 2233 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-04 07:52:36] CVMFS is ok
[2026-04-04 07:52:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-04 07:52:36] Checking for apptainer binary...
[2026-04-04 07:52:36] apptainer is not installed, using version from CVMFS
[2026-04-04 07:52:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-04 07:52:38] epyc7v12
[2026-04-04 07:52:38] apptainer works
[2026-04-04 07:52:38] Set ATHENA_PROC_NUMBER=12
[2026-04-04 07:52:38] Set ATHENA_CORE_NUMBER=12
[2026-04-04 07:52:38] Starting ATLAS job with PandaID=7071892274
[2026-04-04 07:52:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31428/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-04 12:08:57]  *** The last 200 lines of the pilot log: ***
[2026-04-04 12:08:57] 2026-04-04 12:08:15,676 | INFO     | intersect: -35398075125.752464
[2026-04-04 12:08:57] 2026-04-04 12:08:15,677 | INFO     | chi2: 2.1777328457103486
[2026-04-04 12:08:57] 2026-04-04 12:08:15,677 | INFO     | current chi2=2.1777328457103486 (change=0.05910666958613348 %)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,677 | INFO     | right removable region: 244
[2026-04-04 12:08:57] 2026-04-04 12:08:15,678 | INFO     | sum of square deviations: 4560024136.963232
[2026-04-04 12:08:57] 2026-04-04 12:08:15,680 | INFO     | sum of deviations: 36008542289.277565
[2026-04-04 12:08:57] 2026-04-04 12:08:15,684 | INFO     | mean x: 1775296989.012245
[2026-04-04 12:08:57] 2026-04-04 12:08:15,684 | INFO     | mean y: 2674109.2408163263
[2026-04-04 12:08:57] 2026-04-04 12:08:15,684 | INFO     | intersect: -14016079911.532032
[2026-04-04 12:08:57] 2026-04-04 12:08:15,685 | INFO     | chi2: 0.24122659515408645
[2026-04-04 12:08:57] 2026-04-04 12:08:15,685 | INFO     | current chi2=0.24122659515408645 (change=88.92958727134888 %)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,685 | INFO     | sum of square deviations: 4286492511.962482
[2026-04-04 12:08:57] 2026-04-04 12:08:15,687 | INFO     | sum of deviations: 15479654095.712507
[2026-04-04 12:08:57] 2026-04-04 12:08:15,687 | INFO     | mean x: 1775297141.5125
[2026-04-04 12:08:57] 2026-04-04 12:08:15,687 | INFO     | mean y: 2685540.9291666667
[2026-04-04 12:08:57] 2026-04-04 12:08:15,688 | INFO     | intersect: -6408380287.607432
[2026-04-04 12:08:57] 2026-04-04 12:08:15,688 | INFO     | chi2: 0.04376248340133243
[2026-04-04 12:08:57] 2026-04-04 12:08:15,690 | INFO     | current chi2=0.04376248340133243 (change=81.85835049681044 %)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,690 | INFO     | sum of square deviations: 4024123886.9617248
[2026-04-04 12:08:57] 2026-04-04 12:08:15,692 | INFO     | sum of deviations: 9096426692.574465
[2026-04-04 12:08:57] 2026-04-04 12:08:15,692 | INFO     | mean x: 1775297294.012766
[2026-04-04 12:08:57] 2026-04-04 12:08:15,692 | INFO     | mean y: 2689214.8085106383
[2026-04-04 12:08:57] 2026-04-04 12:08:15,693 | INFO     | intersect: -4010323839.99224
[2026-04-04 12:08:57] 2026-04-04 12:08:15,693 | INFO     | chi2: 0.00563704718611621
[2026-04-04 12:08:57] 2026-04-04 12:08:15,695 | INFO     | current chi2=0.00563704718611621 (change=87.1189961172437 %)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,696 | INFO     | sum of square deviations: 3772714489.495652
[2026-04-04 12:08:57] 2026-04-04 12:08:15,697 | INFO     | sum of deviations: 8019872591.504348
[2026-04-04 12:08:57] 2026-04-04 12:08:15,701 | INFO     | mean x: 1775297446.5043478
[2026-04-04 12:08:57] 2026-04-04 12:08:15,701 | INFO     | mean y: 2689865.495652174
[2026-04-04 12:08:57] 2026-04-04 12:08:15,701 | INFO     | intersect: -3771160335.1038656
[2026-04-04 12:08:57] 2026-04-04 12:08:15,702 | INFO     | chi2: 0.005424629937549291
[2026-04-04 12:08:57] 2026-04-04 12:08:15,702 | INFO     | current chi2=0.005424629937549291 (change=3.768236127064771 %)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,702 | INFO     | left removable region: 40
[2026-04-04 12:08:57] 2026-04-04 12:08:15,702 | INFO     | sum of square deviations: 2632441092.9951043
[2026-04-04 12:08:57] 2026-04-04 12:08:15,704 | INFO     | sum of deviations: 1437718398.166667
[2026-04-04 12:08:57] 2026-04-04 12:08:15,708 | INFO     | mean x: 1775297873.504902
[2026-04-04 12:08:57] 2026-04-04 12:08:15,708 | INFO     | mean y: 2694202.8333333335
[2026-04-04 12:08:57] 2026-04-04 12:08:15,708 | INFO     | intersect: -966891943.5598404
[2026-04-04 12:08:57] 2026-04-04 12:08:15,709 | INFO     | chi2: 0.00040581931972107294
[2026-04-04 12:08:57] 2026-04-04 12:08:15,709 | INFO     | current memory leak: 0.55 B/s (using 204 data points, chi2=0.00)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,709 | INFO     | could have reported an average CPU frequency of 2384 MHz (12 samples)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | ..............................
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . Timing measurements:
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . get job = 0 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . initial setup = 15 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . payload setup = 24 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . stage-in = 0 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . payload execution = 15257 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . stage-out = 2 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | . log creation = 0 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,710 | INFO     | ..............................
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | 
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | job summary report
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | --------------------------------------------------
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | PanDA job id: 7071892274
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | task id: 49180014
[2026-04-04 12:08:57] 2026-04-04 12:08:15,881 | INFO     | errors: (none)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | pilot state: finished 
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | transexitcode: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | exeerrorcode: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | exeerrordiag: 
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | exitcode: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | exitmsg: OK
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | cpuconsumptiontime: 98696 s
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | nevents: 400
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | neventsw: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:15,882 | INFO     | pid: 69498
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | pgrp: 69498
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | corecount: 12
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | event service: False
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | sizes: {0: 2279951, 1: 2280412, 15283: 2311822, 15286: 2320866, 15287: 2320922, 15291: 2321116}
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | --------------------------------------------------
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | 
[2026-04-04 12:08:57] 2026-04-04 12:08:15,883 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-04 12:08:57] 2026-04-04 12:08:15,945 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,949 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,949 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-04 12:08:57] 2026-04-04 12:08:15,949 | INFO     | job 7071892274 has completed (purged errors)
[2026-04-04 12:08:57] 2026-04-04 12:08:15,950 | INFO     | overall cleanup function is called
[2026-04-04 12:08:57] 2026-04-04 12:08:16,577 | WARNING  | process 69498 can no longer be monitored (due to stat problems) - aborting
[2026-04-04 12:08:57] 2026-04-04 12:08:16,975 | INFO     | --- collectZombieJob: --- 10, [69498]
[2026-04-04 12:08:57] 2026-04-04 12:08:16,975 | INFO     | zombie collector waiting for pid 69498
[2026-04-04 12:08:57] 2026-04-04 12:08:16,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-04 12:08:57] 2026-04-04 12:08:16,976 | INFO     | collected zombie processes
[2026-04-04 12:08:57] 2026-04-04 12:08:16,976 | INFO     | will attempt to kill all subprocesses of pid=69498
[2026-04-04 12:08:57] 2026-04-04 12:08:17,580 | INFO     | using path: /opt/boinc/instance_homes/boinc_31428/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-04 12:08:57] 2026-04-04 12:08:17,581 | INFO     | using path: /opt/boinc/instance_homes/boinc_31428/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-04 12:08:57] 2026-04-04 12:08:17,581 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-04 12:08:57] 2026-04-04 12:08:17,582 | WARNING  | maxPSS not found in memory monitor output
[2026-04-04 12:08:57] 2026-04-04 12:08:17,585 | INFO     | skipping file size check of payload stdout file (/opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7071892274/payload.stdout) since it has not been created
[2026-04-04 12:08:57] 2026-04-04 12:08:17,585 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-04 12:08:57] 2026-04-04 12:08:17,618 | INFO     | sufficient remaining disk space (345826656256 B)
[2026-04-04 12:08:57] 2026-04-04 12:08:17,619 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-04 12:08:57] 2026-04-04 12:08:17,619 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31428/slots/0/PanDA_Pilot-7071892274/HITS.49180014._000647.pool.root.1 since it does n
[2026-04-04 12:08:57] 2026-04-04 12:08:18,694 | INFO     | process IDs to be killed: [69498] (in reverse order)
[2026-04-04 12:08:57] 2026-04-04 12:08:19,208 | INFO     | number of running child processes to parent process 69498: 1
[2026-04-04 12:08:57] 2026-04-04 12:08:19,209 | INFO     | maximum number of monitored processes: 6
[2026-04-04 12:08:57] 2026-04-04 12:08:19,209 | INFO     | aborting job monitoring since job object (job id=7071892274) has expired
[2026-04-04 12:08:57] 2026-04-04 12:08:19,288 | WARNING  | found no corresponding commands to process id(s)
[2026-04-04 12:08:57] 2026-04-04 12:08:19,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-04 12:08:57] 2026-04-04 12:08:19,326 | INFO     | did not find any defunct processes belonging to 69498
[2026-04-04 12:08:57] 2026-04-04 12:08:19,373 | INFO     | did not find any defunct processes belonging to 69498
[2026-04-04 12:08:57] 2026-04-04 12:08:19,373 | INFO     | ready for new job
[2026-04-04 12:08:57] 2026-04-04 12:08:19,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-04 12:08:57] 2026-04-04 12:08:19,379 | INFO     | **************************************
[2026-04-04 12:08:57] 2026-04-04 12:08:19,380 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-04 12:08:57] 2026-04-04 12:08:19,380 | INFO     | **************************************
[2026-04-04 12:08:57] 2026-04-04 12:08:19,380 | INFO     | 
[2026-04-04 12:08:57] 2026-04-04 12:08:19,398 | INFO     | architecture information:
[2026-04-04 12:08:57] 2026-04-04 12:08:19,402 | INFO     | executing command: cat /etc/os-release
[2026-04-04 12:08:57] 2026-04-04 12:08:19,450 | INFO     | cat /etc/os-release:
[2026-04-04 12:08:57] NAME="CentOS Linux"
[2026-04-04 12:08:57] VERSION="7 (Core)"
[2026-04-04 12:08:57] ID="centos"
[2026-04-04 12:08:57] ID_LIKE="rhel fedora"
[2026-04-04 12:08:57] VERSION_ID="7"
[2026-04-04 12:08:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-04 12:08:57] ANSI_COLOR="0;31"
[2026-04-04 12:08:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-04 12:08:57] HOME_URL="https://www.centos.org/"
[2026-04-04 12:08:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-04 12:08:57] 
[2026-04-04 12:08:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-04 12:08:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-04 12:08:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-04 12:08:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-04 12:08:57] 
[2026-04-04 12:08:57] 2026-04-04 12:08:19,451 | INFO     | **************************************
[2026-04-04 12:08:57] 2026-04-04 12:08:19,953 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31428/slots/0
[2026-04-04 12:08:57] 2026-04-04 12:08:19,999 | INFO     | sufficient remaining disk space (345826656256 B)
[2026-04-04 12:08:57] 2026-04-04 12:08:20,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-04 12:08:57] 2026-04-04 12:08:20,003 | INFO     | current server update state: UPDATING_FINAL
[2026-04-04 12:08:57] 2026-04-04 12:08:20,003 | INFO     | update_server=False
[2026-04-04 12:08:57] 2026-04-04 12:08:20,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-04 12:08:57] 2026-04-04 12:08:20,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-04 12:08:57] 2026-04-04 12:08:20,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-04 12:08:57] 2026-04-04 12:08:20,004 | INFO     | will abort loop
[2026-04-04 12:08:57] 2026-04-04 12:08:20,025 | INFO     | all data control threads have been joined
[2026-04-04 12:08:57] 2026-04-04 12:08:20,237 | INFO     | all payload control threads have been joined
[2026-04-04 12:08:57] 2026-04-04 12:08:20,552 | INFO     | all job control threads have been joined
[2026-04-04 12:08:57] 2026-04-04 12:08:20,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-04 12:08:57] 2026-04-04 12:08:21,008 | INFO     | [job] retrieve thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,009 | INFO     | [job] job monitor thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,030 | INFO     | [data] control thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,242 | INFO     | [payload] control thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,320 | INFO     | [payload] validate_pre thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,454 | INFO     | [job] validate thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,557 | INFO     | [job] control thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,741 | INFO     | [payload] validate_post thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,904 | INFO     | [job] queue monitor thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:21,954 | INFO     | [job] create_data_payload thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:22,008 | INFO     | [data] copytool_out thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:22,032 | INFO     | [payload] failed_post thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:22,185 | INFO     | [payload] execute_payloads thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:22,207 | INFO     | [data] copytool_in thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:22,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-04 12:08:57] 2026-04-04 12:08:26,824 | INFO     | [data] queue_monitor thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:30,128 | INFO     | job.realtimelogging is not enabled
[2026-04-04 12:08:57] 2026-04-04 12:08:31,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-04 12:08:57] 2026-04-04 12:08:49,103 | INFO     | [monitor] cgroup control has ended
[2026-04-04 12:08:57] 2026-04-04 12:08:49,448 | INFO     | PID=64478 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-04 12:08:57] 2026-04-04 12:08:49,450 | INFO     | .. there are 19 such processes running
[2026-04-04 12:08:57] 2026-04-04 12:08:49,451 | INFO     | found 0 job(s) in 20 queues
[2026-04-04 12:08:57] 2026-04-04 12:08:49,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-04 12:08:57] 2026-04-04 12:08:49,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-04 12:08:57] 2026-04-04 12:08:51,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138437837805376)>', '<ExcThread(monitor, started 138437298468608)>']
[2026-04-04 12:08:57] 2026-04-04 12:08:51,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-04 12:08:57] 2026-04-04 12:08:51,465 | INFO     | [monitor] control thread has ended
[2026-04-04 12:08:57] 2026-04-04 12:08:56,207 | INFO     | all workflow threads have been joined
[2026-04-04 12:08:57] 2026-04-04 12:08:56,207 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-04 12:08:57] 2026-04-04 12:08:56,208 | INFO     | traces error code: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:56,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-04 12:08:57] 2026-04-04 12:08:56,456 [wrapper] ==== pilot stdout END ====
[2026-04-04 12:08:57] 2026-04-04 12:08:56,466 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-04 12:08:57] 2026-04-04 12:08:56,472 [wrapper] pilotpid: 64478
[2026-04-04 12:08:57] 2026-04-04 12:08:56,479 [wrapper] Pilot exit status: 0
[2026-04-04 12:08:57] 2026-04-04 12:08:56,505 [wrapper] pandaids: 7071892274
[2026-04-04 12:08:57] 2026-04-04 12:08:56,753 [wrapper] cleanup supervisor_pilot  370315 64479
[2026-04-04 12:08:57] 2026-04-04 12:08:56,762 [wrapper] Test setup, not cleaning
[2026-04-04 12:08:57] 2026-04-04 12:08:56,772 [wrapper] apfmon messages muted
[2026-04-04 12:08:57] 2026-04-04 12:08:56,783 [wrapper] ==== wrapper stdout END ====
[2026-04-04 12:08:57] 2026-04-04 12:08:56,792 [wrapper] ==== wrapper stderr END ====
[2026-04-04 12:08:57]  *** Error codes and diagnostics ***
[2026-04-04 12:08:57]     "exeErrorCode": 0,
[2026-04-04 12:08:57]     "exeErrorDiag": "",
[2026-04-04 12:08:57]     "pilotErrorCode": 0,
[2026-04-04 12:08:57]     "pilotErrorDiag": "",
[2026-04-04 12:08:57]  *** Listing of results directory ***
[2026-04-04 12:08:57] total 463132
[2026-04-04 12:08:57] -rwx------ 1 boinc boinc     36322 Mar 28 06:40 runpilot2-wrapper.sh
[2026-04-04 12:08:57] -rw-r--r-- 1 boinc boinc    585013 Mar 28 06:41 pilot3.tar.gz
[2026-04-04 12:08:57] -rw-r--r-- 1 boinc boinc      5118 Mar 28 06:41 queuedata.json
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc       100 Apr  4 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-04 12:08:57] -rwxr-xr-x 1 boinc boinc      7986 Apr  4 07:52 run_atlas
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc       105 Apr  4 07:52 job.xml
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc 237808230 Apr  4 07:52 EVNT.49132557._000005.pool.root.1
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc     15845 Apr  4 07:52 start_atlas.sh
[2026-04-04 12:08:57] drwxrwx--x 2 boinc boinc      4096 Apr  4 07:52 shared
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc    597573 Apr  4 07:52 input.tar.gz
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc      6555 Apr  4 07:52 init_data.xml
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc         0 Apr  4 07:52 boinc_setup_complete
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc         0 Apr  4 07:52 boinc_lockfile
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc      2674 Apr  4 07:52 pandaJob.out
[2026-04-04 12:08:57] -rw------- 1 boinc boinc   1005165 Apr  4 07:53 agis_schedconf.cvmfs.json
[2026-04-04 12:08:57] -rw------- 1 boinc boinc       419 Apr  4 07:53 workernode_map.json
[2026-04-04 12:08:57] drwx------ 5 boinc boinc      4096 Apr  4 07:53 pilot3
[2026-04-04 12:08:57] -rw------- 1 boinc boinc 227237356 Apr  4 12:07 HITS.49180014._000647.pool.root.1
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc       531 Apr  4 12:07 boinc_task_state.xml
[2026-04-04 12:08:57] -rw------- 1 boinc boinc      1036 Apr  4 12:08 memory_monitor_summary.json
[2026-04-04 12:08:57] -rw------- 1 boinc boinc   1511579 Apr  4 12:08 agis_ddmendpoints.agis.ALL.json
[2026-04-04 12:08:57] -rw------- 1 boinc boinc    540074 Apr  4 12:08 log.49180014._000647.job.log.tgz.1
[2026-04-04 12:08:57] -rw------- 1 boinc boinc      6268 Apr  4 12:08 heartbeat.json
[2026-04-04 12:08:57] -rw------- 1 boinc boinc        95 Apr  4 12:08 pilot_heartbeat.json
[2026-04-04 12:08:57] -rw------- 1 boinc boinc      4917 Apr  4 12:08 pilotlog.txt
[2026-04-04 12:08:57] -rw------- 1 boinc boinc   2091672 Apr  4 12:08 log.49180014._000647.job.log.1
[2026-04-04 12:08:57] -rw------- 1 boinc boinc       357 Apr  4 12:08 output.list
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc       620 Apr  4 12:08 runtime_log
[2026-04-04 12:08:57] -rw------- 1 boinc boinc   2652160 Apr  4 12:08 result.tar.gz
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc      9167 Apr  4 12:08 runtime_log.err
[2026-04-04 12:08:57] -rw------- 1 boinc boinc       656 Apr  4 12:08 AclMDm3WcQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDmvNHKDm5lIXJm.diag
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc        29 Apr  4 12:08 wrapper_checkpoint.txt
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc      8192 Apr  4 12:08 boinc_mmap_file
[2026-04-04 12:08:57] -rw-rw-r-- 1 boinc boinc     21403 Apr  4 12:08 stderr.txt
[2026-04-04 12:08:57] HITS file was successfully produced:
[2026-04-04 12:08:57] -rw------- 1 boinc boinc 227237356 Apr  4 12:07 shared/HITS.pool.root.1
[2026-04-04 12:08:57]  *** Contents of shared directory: ***
[2026-04-04 12:08:57] total 457348
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc 237808230 Apr  4 07:52 ATLAS.root_0
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc     15845 Apr  4 07:52 start_atlas.sh
[2026-04-04 12:08:57] -rw-r--r-- 2 boinc boinc    597573 Apr  4 07:52 input.tar.gz
[2026-04-04 12:08:57] -rw------- 1 boinc boinc 227237356 Apr  4 12:07 HITS.pool.root.1
[2026-04-04 12:08:57] -rw------- 1 boinc boinc   2652160 Apr  4 12:08 result.tar.gz
12:08:59 (59919): run_atlas exited; CPU time 99641.556888
12:08:59 (59919): called boinc_finish(0)

</stderr_txt>
]]>

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