Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:19:03 (3551565): wrapper (7.7.26015): starting
00:19:03 (3551565): wrapper: running run_atlas (--nthreads 4)
[2026-04-02 00:19:03] Arguments: --nthreads 4
[2026-04-02 00:19:03] Threads: 4
[2026-04-02 00:19:03] Checking for CVMFS
[2026-04-02 00:19:03] No cvmfs_config command found, will try listing directly
[2026-04-02 00:19:04] CVMFS is ok
[2026-04-02 00:19:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-02 00:19:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-02 00:19:04] Further information can be found at the LHC@home message board.
[2026-04-02 00:19:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-02 00:19:04] Checking for apptainer binary...
[2026-04-02 00:19:04] which: no apptainer in ((null))
[2026-04-02 00:19:04] apptainer is not installed, using version from CVMFS
[2026-04-02 00:19:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-02 00:19:04] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-02 00:19:04] apptainer works
[2026-04-02 00:19:04] Set ATHENA_PROC_NUMBER=4
[2026-04-02 00:19:04] Set ATHENA_CORE_NUMBER=4
[2026-04-02 00:19:04] Starting ATLAS job with PandaID=7071892386
[2026-04-02 00:19:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-02 07:39:05]  *** The last 200 lines of the pilot log: ***
[2026-04-02 07:39:05] 2026-04-02 05:37:21,413 | INFO     | reading metadata from: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7071892386/jobReport.json
[2026-04-02 07:39:05] 2026-04-02 05:37:21,416 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot128/slots/0/workernode_map.json
[2026-04-02 07:39:05] 2026-04-02 05:37:21,416 | INFO     | this job has now completed (state=finished)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,416 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,416 | INFO     | log transfer has been attempted: DONE
[2026-04-02 07:39:05] 2026-04-02 05:37:21,417 | INFO     | job 7071892386 has finished - writing final server update
[2026-04-02 07:39:05] 2026-04-02 05:37:21,417 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3012752/.job.ad'
[2026-04-02 07:39:05] 2026-04-02 05:37:21,417 | INFO     | total number of processed events: 400 (read)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,443 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7071892386/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,444 | INFO     | extracted standard info from prmon json
[2026-04-02 07:39:05] 2026-04-02 05:37:21,444 | INFO     | extracted standard memory fields from prmon json
[2026-04-02 07:39:05] 2026-04-02 05:37:21,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-02 07:39:05] 2026-04-02 05:37:21,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-02 07:39:05] 2026-04-02 05:37:21,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-02 07:39:05] 2026-04-02 05:37:21,451 | INFO     | fitting pss+swap vs Time
[2026-04-02 07:39:05] 2026-04-02 05:37:21,451 | INFO     | sum of square deviations: 24653662247.5
[2026-04-02 07:39:05] 2026-04-02 05:37:21,456 | INFO     | sum of deviations: 44276212977.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,456 | INFO     | mean x: 1775095087.5
[2026-04-02 07:39:05] 2026-04-02 05:37:21,456 | INFO     | mean y: 2342564.5581395347
[2026-04-02 07:39:05] 2026-04-02 05:37:21,457 | INFO     | intersect: -3185601172.139491
[2026-04-02 07:39:05] 2026-04-02 05:37:21,457 | INFO     | chi2: 1.3468282219958851
[2026-04-02 07:39:05] 2026-04-02 05:37:21,458 | INFO     | sum of square deviations: 23803609100.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,462 | INFO     | sum of deviations: 43413094575.00001
[2026-04-02 07:39:05] 2026-04-02 05:37:21,462 | INFO     | mean x: 1775094935.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,462 | INFO     | mean y: 2342409.802352941
[2026-04-02 07:39:05] 2026-04-02 05:37:21,462 | INFO     | intersect: -3235081124.1254706
[2026-04-02 07:39:05] 2026-04-02 05:37:21,463 | INFO     | chi2: 1.347002600313135
[2026-04-02 07:39:05] 2026-04-02 05:37:21,463 | INFO     | current chi2=1.347002600313135 (change=-0.012947331693974619 %)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,463 | INFO     | right removable region: 424
[2026-04-02 07:39:05] 2026-04-02 05:37:21,464 | INFO     | sum of square deviations: 23803609100.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,468 | INFO     | sum of deviations: -11183980035.000006
[2026-04-02 07:39:05] 2026-04-02 05:37:21,468 | INFO     | mean x: 1775095240.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,469 | INFO     | mean y: 2352453.489411765
[2026-04-02 07:39:05] 2026-04-02 05:37:21,469 | INFO     | intersect: 836370086.7391337
[2026-04-02 07:39:05] 2026-04-02 05:37:21,469 | INFO     | chi2: 0.02724760521356095
[2026-04-02 07:39:05] 2026-04-02 05:37:21,469 | INFO     | current chi2=0.02724760521356095 (change=97.9769056834002 %)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,470 | INFO     | sum of square deviations: 22973323765.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,474 | INFO     | sum of deviations: -12681632881.000002
[2026-04-02 07:39:05] 2026-04-02 05:37:21,474 | INFO     | mean x: 1775095392.5
[2026-04-02 07:39:05] 2026-04-02 05:37:21,475 | INFO     | mean y: 2352724.033333333
[2026-04-02 07:39:05] 2026-04-02 05:37:21,475 | INFO     | intersect: 982233055.0951979
[2026-04-02 07:39:05] 2026-04-02 05:37:21,475 | INFO     | chi2: 0.022676893381798378
[2026-04-02 07:39:05] 2026-04-02 05:37:21,475 | INFO     | current chi2=0.022676893381798378 (change=16.774728626381304 %)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,476 | INFO     | left removable region: 20
[2026-04-02 07:39:05] 2026-04-02 05:37:21,476 | INFO     | sum of square deviations: 20446541505.0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,480 | INFO     | sum of deviations: -4672824296.999999
[2026-04-02 07:39:05] 2026-04-02 05:37:21,480 | INFO     | mean x: 1775095514.5
[2026-04-02 07:39:05] 2026-04-02 05:37:21,480 | INFO     | mean y: 2351073.1831683167
[2026-04-02 07:39:05] 2026-04-02 05:37:21,481 | INFO     | intersect: 408028945.2879898
[2026-04-02 07:39:05] 2026-04-02 05:37:21,481 | INFO     | chi2: 0.01571480602580772
[2026-04-02 07:39:05] 2026-04-02 05:37:21,481 | INFO     | current memory leak: -0.23 B/s (using 404 data points, chi2=0.02)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | could have reported an average CPU frequency of 2718 MHz (18 samples)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | ..............................
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | . Timing measurements:
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | . get job = 0 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | . initial setup = 8 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | . payload setup = 15 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,482 | INFO     | . stage-in = 0 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,483 | INFO     | . payload execution = 26237 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,483 | INFO     | . stage-out = 1 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,483 | INFO     | . log creation = 0 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,483 | INFO     | ..............................
[2026-04-02 07:39:05] 2026-04-02 05:37:21,643 | INFO     | time since job start (26273s) is within the limit (345600.0s)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | 
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | job summary report
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | --------------------------------------------------
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | PanDA job id: 7071892386
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | task id: 49180463
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | errors: (none)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,880 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | pilot state: finished 
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | transexitcode: 0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | exeerrorcode: 0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | exeerrordiag: 
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | exitcode: 0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | exitmsg: OK
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | cpuconsumptiontime: 101103 s
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | nevents: 400
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | neventsw: 0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | pid: 3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | pgrp: 3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | corecount: 4
[2026-04-02 07:39:05] 2026-04-02 05:37:21,881 | INFO     | event service: False
[2026-04-02 07:39:05] 2026-04-02 05:37:21,882 | INFO     | sizes: {0: 2279892, 1: 2280353, 12: 2280353, 26256: 2317564, 26257: 2317563, 26259: 2326825, 26262: 2326963}
[2026-04-02 07:39:05] 2026-04-02 05:37:21,882 | INFO     | --------------------------------------------------
[2026-04-02 07:39:05] 2026-04-02 05:37:21,882 | INFO     | 
[2026-04-02 07:39:05] 2026-04-02 05:37:21,882 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/0
[2026-04-02 07:39:05] 2026-04-02 05:37:21,913 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,916 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-02 07:39:05] 2026-04-02 05:37:21,916 | INFO     | job 7071892386 has completed (purged errors)
[2026-04-02 07:39:05] 2026-04-02 05:37:21,916 | INFO     | overall cleanup function is called
[2026-04-02 07:39:05] 2026-04-02 05:37:22,925 | INFO     | --- collectZombieJob: --- 10, [3560905]
[2026-04-02 07:39:05] 2026-04-02 05:37:22,925 | INFO     | zombie collector waiting for pid 3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:22,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-02 07:39:05] 2026-04-02 05:37:22,925 | INFO     | collected zombie processes
[2026-04-02 07:39:05] 2026-04-02 05:37:22,925 | INFO     | will attempt to kill all subprocesses of pid=3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:23,779 | INFO     | process IDs to be killed: [3560905] (in reverse order)
[2026-04-02 07:39:05] 2026-04-02 05:37:24,118 | WARNING  | found no corresponding commands to process id(s)
[2026-04-02 07:39:05] 2026-04-02 05:37:24,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-02 07:39:05] 2026-04-02 05:37:24,153 | INFO     | did not find any defunct processes belonging to 3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:24,183 | INFO     | did not find any defunct processes belonging to 3560905
[2026-04-02 07:39:05] 2026-04-02 05:37:24,183 | INFO     | ready for new job
[2026-04-02 07:39:05] 2026-04-02 05:37:24,183 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-02 07:39:05] 2026-04-02 05:37:24,187 | INFO     | **************************************
[2026-04-02 07:39:05] 2026-04-02 05:37:24,187 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-02 07:39:05] 2026-04-02 05:37:24,187 | INFO     | **************************************
[2026-04-02 07:39:05] 2026-04-02 05:37:24,187 | INFO     | 
[2026-04-02 07:39:05] 2026-04-02 05:37:24,225 | INFO     | architecture information:
[2026-04-02 07:39:05] 2026-04-02 05:37:24,226 | INFO     | executing command: cat /etc/os-release
[2026-04-02 07:39:05] 2026-04-02 05:37:24,253 | INFO     | cat /etc/os-release:
[2026-04-02 07:39:05] NAME="CentOS Linux"
[2026-04-02 07:39:05] VERSION="7 (Core)"
[2026-04-02 07:39:05] ID="centos"
[2026-04-02 07:39:05] ID_LIKE="rhel fedora"
[2026-04-02 07:39:05] VERSION_ID="7"
[2026-04-02 07:39:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-02 07:39:05] ANSI_COLOR="0;31"
[2026-04-02 07:39:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-02 07:39:05] HOME_URL="https://www.centos.org/"
[2026-04-02 07:39:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-02 07:39:05] 
[2026-04-02 07:39:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-02 07:39:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-02 07:39:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-02 07:39:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-02 07:39:05] 
[2026-04-02 07:39:05] 2026-04-02 05:37:24,254 | INFO     | **************************************
[2026-04-02 07:39:05] 2026-04-02 05:37:24,756 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-04-02 07:39:05] 2026-04-02 05:37:24,785 | INFO     | sufficient remaining disk space (262628442112 B)
[2026-04-02 07:39:05] 2026-04-02 05:37:24,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-02 07:39:05] 2026-04-02 05:37:24,786 | INFO     | current server update state: UPDATING_FINAL
[2026-04-02 07:39:05] 2026-04-02 05:37:24,786 | INFO     | update_server=False
[2026-04-02 07:39:05] 2026-04-02 05:37:24,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-02 07:39:05] 2026-04-02 05:37:24,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-02 07:39:05] 2026-04-02 05:37:24,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-02 07:39:05] 2026-04-02 05:37:25,016 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-02 07:39:05] 2026-04-02 05:37:25,020 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-02 07:39:05] 2026-04-02 05:37:25,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-02 07:39:05] 2026-04-02 05:37:25,020 | INFO     | will abort loop
[2026-04-02 07:39:05] 2026-04-02 05:37:25,502 | INFO     | all data control threads have been joined
[2026-04-02 07:39:05] 2026-04-02 05:37:25,508 | INFO     | all job control threads have been joined
[2026-04-02 07:39:05] 2026-04-02 05:37:25,791 | INFO     | [job] retrieve thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:25,921 | INFO     | [payload] validate_post thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,023 | INFO     | [job] job monitor thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,058 | INFO     | [job] validate thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,135 | INFO     | [payload] validate_pre thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,135 | INFO     | [job] create_data_payload thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,243 | INFO     | all payload control threads have been joined
[2026-04-02 07:39:05] 2026-04-02 05:37:26,400 | INFO     | [payload] execute_payloads thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,507 | INFO     | [data] control thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,513 | INFO     | [job] control thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-02 07:39:05] 2026-04-02 05:37:26,791 | INFO     | [data] copytool_out thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,923 | INFO     | [data] copytool_in thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:26,959 | INFO     | [payload] failed_post thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:27,248 | INFO     | [payload] control thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:27,591 | INFO     | [job] queue monitor thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:28,792 | INFO     | [data] queue_monitor thread has finished
[2026-04-02 07:39:05] 2026-04-02 05:37:55,742 | INFO     | PID=3555634 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-02 07:39:05] 2026-04-02 05:37:55,742 | INFO     | .. there are 22 such processes running
[2026-04-02 07:39:05] 2026-04-02 05:37:55,743 | INFO     | found 0 job(s) in 20 queues
[2026-04-02 07:39:05] 2026-04-02 05:37:55,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-02 07:39:05] 2026-04-02 05:37:55,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-02 07:39:05] 2026-04-02 05:38:11,589 | INFO     | [monitor] cgroup control has ended
[2026-04-02 07:39:05] 2026-04-02 05:38:12,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23315376277312)>', '<ExcThread(monitor, started 23315139016448)>']
[2026-04-02 07:39:05] 2026-04-02 05:38:12,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-02 07:39:05] 2026-04-02 05:38:12,828 | INFO     | [monitor] control thread has ended
[2026-04-02 07:39:05] 2026-04-02 05:38:17,648 | INFO     | all workflow threads have been joined
[2026-04-02 07:39:05] 2026-04-02 05:38:17,648 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-02 07:39:05] 2026-04-02 05:38:17,648 | INFO     | traces error code: 0
[2026-04-02 07:39:05] 2026-04-02 05:38:17,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-02 07:39:05] 2026-04-02 05:38:17,785 [wrapper] ==== pilot stdout END ====
[2026-04-02 07:39:05] 2026-04-02 05:38:17,788 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-02 07:39:05] 2026-04-02 05:38:17,793 [wrapper] pilotpid: 3555634
[2026-04-02 07:39:05] 2026-04-02 05:38:17,797 [wrapper] Pilot exit status: 0
[2026-04-02 07:39:05] 2026-04-02 05:38:17,812 [wrapper] pandaids: 7071892386
[2026-04-02 07:39:05] 2026-04-02 05:38:18,030 [wrapper] cleanup supervisor_pilot  497643 3555635
[2026-04-02 07:39:05] 2026-04-02 05:38:18,034 [wrapper] Test setup, not cleaning
[2026-04-02 07:39:05] 2026-04-02 05:38:18,039 [wrapper] apfmon messages muted
[2026-04-02 07:39:05] 2026-04-02 05:38:18,043 [wrapper] ==== wrapper stdout END ====
[2026-04-02 07:39:05] 2026-04-02 05:38:18,047 [wrapper] ==== wrapper stderr END ====
[2026-04-02 07:39:05]  *** Error codes and diagnostics ***
[2026-04-02 07:39:05]     "exeErrorCode": 0,
[2026-04-02 07:39:05]     "exeErrorDiag": "",
[2026-04-02 07:39:05]     "pilotErrorCode": 0,
[2026-04-02 07:39:05]     "pilotErrorDiag": "",
[2026-04-02 07:39:05]  *** Listing of results directory ***
[2026-04-02 07:39:05] total 487700
[2026-04-02 07:39:05] -rwx------. 1 boinc boinc     36322 Mar 28 07:41 runpilot2-wrapper.sh
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc    585013 Mar 28 07:41 pilot3.tar.gz
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc      5118 Mar 28 07:41 queuedata.json
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc       100 Apr  2 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-02 07:39:05] -rwxr-xr-x. 1 boinc boinc      7986 Apr  2 00:18 run_atlas
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc       105 Apr  2 00:18 job.xml
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc      6624 Apr  2 00:19 init_data.xml
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc 244828394 Apr  2 00:19 EVNT.49133287._000009.pool.root.1
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc     15845 Apr  2 00:19 start_atlas.sh
[2026-04-02 07:39:05] drwxrwx--x. 2 boinc boinc      4096 Apr  2 00:19 shared
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc    597551 Apr  2 00:19 input.tar.gz
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc         0 Apr  2 00:19 boinc_lockfile
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc      2625 Apr  2 00:19 pandaJob.out
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc   1005493 Apr  2 00:19 agis_schedconf.cvmfs.json
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc       444 Apr  2 00:19 workernode_map.json
[2026-04-02 07:39:05] drwx------. 5 boinc boinc      4096 Apr  2 00:19 pilot3
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc 242378380 Apr  2 07:36 HITS.49180463._000457.pool.root.1
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc       531 Apr  2 07:37 boinc_task_state.xml
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc      1042 Apr  2 07:37 memory_monitor_summary.json
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc   1511579 Apr  2 07:37 agis_ddmendpoints.agis.ALL.json
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc    551339 Apr  2 07:37 log.49180463._000457.job.log.tgz.1
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc      6349 Apr  2 07:37 heartbeat.json
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc        95 Apr  2 07:37 pilot_heartbeat.json
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc      5018 Apr  2 07:38 pilotlog.txt
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc   3576550 Apr  2 07:38 log.49180463._000457.job.log.1
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc       357 Apr  2 07:38 output.list
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc       620 Apr  2 07:38 runtime_log
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc   4147200 Apr  2 07:38 result.tar.gz
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc      9222 Apr  2 07:38 runtime_log.err
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc       667 Apr  2 07:38 dNGNDm9WcQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmeoJKDmEEZTXo.diag
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc        29 Apr  2 07:38 wrapper_checkpoint.txt
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc      8192 Apr  2 07:39 boinc_mmap_file
[2026-04-02 07:39:05] -rw-r--r--. 1 boinc boinc     21162 Apr  2 07:39 stderr.txt
[2026-04-02 07:39:05] HITS file was successfully produced:
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc 242378380 Apr  2 07:36 shared/HITS.pool.root.1
[2026-04-02 07:39:05]  *** Contents of shared directory: ***
[2026-04-02 07:39:05] total 480452
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc 244828394 Apr  2 00:19 ATLAS.root_0
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc     15845 Apr  2 00:19 start_atlas.sh
[2026-04-02 07:39:05] -rw-r--r--. 2 boinc boinc    597551 Apr  2 00:19 input.tar.gz
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc 242378380 Apr  2 07:36 HITS.pool.root.1
[2026-04-02 07:39:05] -rw-------. 1 boinc boinc   4147200 Apr  2 07:38 result.tar.gz
07:39:06 (3551565): run_atlas exited; CPU time 102958.911464
07:39:06 (3551565): called boinc_finish(0)

</stderr_txt>
]]>

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