Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
03:29:37 (20398): wrapper (7.7.26015): starting
03:29:37 (20398): wrapper: running run_atlas (--nthreads 2)
[2026-03-28 03:29:37] Arguments: --nthreads 2
[2026-03-28 03:29:37] Threads: 2
[2026-03-28 03:29:37] Checking for CVMFS
[2026-03-28 03:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-28 03:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-28 03:29:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-28 03:29:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-28 03:29:39] 2.13.3.0 31410 5056 49540 157792 4 1 1733036 4096000 0 130560 0 452708 98.562 693062 1412 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-28 03:29:39] CVMFS is ok
[2026-03-28 03:29:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-28 03:29:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-28 03:29:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-28 03:29:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-28 03:29:39] Further information can be found at the LHC@home message board.
[2026-03-28 03:29:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-28 03:29:39] Checking for apptainer binary...
[2026-03-28 03:29:39] apptainer is not installed, using version from CVMFS
[2026-03-28 03:29:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-28 03:29:39] nwest-clemson
[2026-03-28 03:29:39] apptainer works
[2026-03-28 03:29:39] Set ATHENA_PROC_NUMBER=2
[2026-03-28 03:29:39] Set ATHENA_CORE_NUMBER=2
[2026-03-28 03:29:39] Starting ATLAS job with PandaID=7065655824
[2026-03-28 03:29:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-28 08:51:43]  *** The last 200 lines of the pilot log: ***
[2026-03-28 08:51:43] 2026-03-28 12:51:11,884 | INFO     | job 7065655824 has state=finished
[2026-03-28 08:51:43] 2026-03-28 12:51:11,884 | INFO     | preparing for final server update for job 7065655824 in state='finished'
[2026-03-28 08:51:43] 2026-03-28 12:51:11,885 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7065655824/jobReport.json
[2026-03-28 08:51:43] 2026-03-28 12:51:11,887 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-28 08:51:43] 2026-03-28 12:51:11,887 | INFO     | this job has now completed (state=finished)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,887 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,887 | INFO     | log transfer has been attempted: DONE
[2026-03-28 08:51:43] 2026-03-28 12:51:11,887 | INFO     | job 7065655824 has finished - writing final server update
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | INFO     | total number of processed events: 400 (read)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7065655824/memory_monitor_summary.json (trf name=prmon)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | INFO     | extracted standard info from prmon json
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | INFO     | extracted standard memory fields from prmon json
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-28 08:51:43] 2026-03-28 12:51:11,888 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-28 08:51:43] 2026-03-28 12:51:11,890 | INFO     | fitting pss+swap vs Time
[2026-03-28 08:51:43] 2026-03-28 12:51:11,890 | INFO     | sum of square deviations: 9784425315.0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | sum of deviations: -111886708923.00002
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | mean x: 1774692616.5
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | mean y: 2329516.3670886075
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | intersect: 20296267056.645897
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | chi2: 1.9113914180922549
[2026-03-28 08:51:43] 2026-03-28 12:51:11,891 | INFO     | sum of square deviations: 9327281860.0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | sum of deviations: -110115386164.99998
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | mean x: 1774692464.0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | mean y: 2330107.4340836015
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | intersect: 20953873003.927544
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | chi2: 1.9034467269139768
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | current chi2=1.9034467269139768 (change=0.41564962064168176 %)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | right removable region: 310
[2026-03-28 08:51:43] 2026-03-28 12:51:11,892 | INFO     | sum of square deviations: 9327281860.0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | sum of deviations: -138944829916.99997
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | mean x: 1774692769.0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | mean y: 2338413.0514469454
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | intersect: 26439234889.945816
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | chi2: 0.6835947364715468
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | current chi2=0.6835947364715468 (change=64.23575359808628 %)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,893 | INFO     | sum of square deviations: 8884603792.5
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | sum of deviations: -123190339085.50002
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | mean x: 1774692921.5
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | mean y: 2332984.617647059
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | intersect: 24609510510.8429
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | chi2: 0.6530579725601141
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | current chi2=0.6530579725601141 (change=4.46708587445417 %)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | left removable region: 20
[2026-03-28 08:51:43] 2026-03-28 12:51:11,894 | INFO     | sum of square deviations: 7562532492.5
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | sum of deviations: -88571680573.50002
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | mean x: 1774693043.5
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | mean y: 2321606.168965517
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | intersect: 20787362268.246433
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | chi2: 0.55263194582511
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | current memory leak: -11.71 B/s (using 290 data points, chi2=0.55)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | could have reported an average CPU frequency of 2635 MHz (14 samples)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | ..............................
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . Timing measurements:
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . get job = 0 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . initial setup = 5 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . payload setup = 2 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . stage-in = 0 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . payload execution = 19257 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . stage-out = 3 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | . log creation = 0 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,895 | INFO     | ..............................
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | 
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | job summary report
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | --------------------------------------------------
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | PanDA job id: 7065655824
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | task id: 48967102
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | errors: (none)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | pilot state: finished 
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | transexitcode: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | exeerrorcode: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | exeerrordiag: 
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | exitcode: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,921 | INFO     | exitmsg: OK
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | cpuconsumptiontime: 38261 s
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | nevents: 400
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | neventsw: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | pid: 28557
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | pgrp: 28557
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | corecount: 2
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | event service: False
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | sizes: {0: 2279830, 1: 2280291, 11: 2280291, 19263: 2313576, 19266: 2322588, 19267: 2322644, 19268: 2322966}
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | --------------------------------------------------
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | 
[2026-03-28 08:51:43] 2026-03-28 12:51:11,922 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-28 08:51:43] 2026-03-28 12:51:11,930 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | job 7065655824 has completed (purged errors)
[2026-03-28 08:51:43] 2026-03-28 12:51:11,931 | INFO     | overall cleanup function is called
[2026-03-28 08:51:43] 2026-03-28 12:51:12,937 | INFO     | --- collectZombieJob: --- 10, [28557]
[2026-03-28 08:51:43] 2026-03-28 12:51:12,937 | INFO     | zombie collector waiting for pid 28557
[2026-03-28 08:51:43] 2026-03-28 12:51:12,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-28 08:51:43] 2026-03-28 12:51:12,938 | INFO     | collected zombie processes
[2026-03-28 08:51:43] 2026-03-28 12:51:12,938 | INFO     | will attempt to kill all subprocesses of pid=28557
[2026-03-28 08:51:43] 2026-03-28 12:51:12,966 | INFO     | process IDs to be killed: [28557] (in reverse order)
[2026-03-28 08:51:43] 2026-03-28 12:51:12,983 | WARNING  | found no corresponding commands to process id(s)
[2026-03-28 08:51:43] 2026-03-28 12:51:12,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-28 08:51:43] 2026-03-28 12:51:12,984 | INFO     | did not find any defunct processes belonging to 28557
[2026-03-28 08:51:43] 2026-03-28 12:51:12,985 | INFO     | did not find any defunct processes belonging to 28557
[2026-03-28 08:51:43] 2026-03-28 12:51:12,985 | INFO     | ready for new job
[2026-03-28 08:51:43] 2026-03-28 12:51:12,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-28 08:51:43] 2026-03-28 12:51:12,985 | INFO     | **************************************
[2026-03-28 08:51:43] 2026-03-28 12:51:12,985 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-28 08:51:43] 2026-03-28 12:51:12,986 | INFO     | **************************************
[2026-03-28 08:51:43] 2026-03-28 12:51:12,986 | INFO     | 
[2026-03-28 08:51:43] 2026-03-28 12:51:12,986 | INFO     | architecture information:
[2026-03-28 08:51:43] 2026-03-28 12:51:12,986 | INFO     | executing command: cat /etc/os-release
[2026-03-28 08:51:43] 2026-03-28 12:51:12,991 | INFO     | cat /etc/os-release:
[2026-03-28 08:51:43] NAME="CentOS Linux"
[2026-03-28 08:51:43] VERSION="7 (Core)"
[2026-03-28 08:51:43] ID="centos"
[2026-03-28 08:51:43] ID_LIKE="rhel fedora"
[2026-03-28 08:51:43] VERSION_ID="7"
[2026-03-28 08:51:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-28 08:51:43] ANSI_COLOR="0;31"
[2026-03-28 08:51:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-28 08:51:43] HOME_URL="https://www.centos.org/"
[2026-03-28 08:51:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-28 08:51:43] 
[2026-03-28 08:51:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-28 08:51:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-28 08:51:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-28 08:51:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-28 08:51:43] 
[2026-03-28 08:51:43] 2026-03-28 12:51:12,991 | INFO     | **************************************
[2026-03-28 08:51:43] 2026-03-28 12:51:13,494 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-28 08:51:43] 2026-03-28 12:51:13,507 | INFO     | sufficient remaining disk space (387596681216 B)
[2026-03-28 08:51:43] 2026-03-28 12:51:13,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-28 08:51:43] 2026-03-28 12:51:13,507 | INFO     | current server update state: UPDATING_FINAL
[2026-03-28 08:51:43] 2026-03-28 12:51:13,507 | INFO     | update_server=False
[2026-03-28 08:51:43] 2026-03-28 12:51:13,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-28 08:51:43] 2026-03-28 12:51:13,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-28 08:51:43] 2026-03-28 12:51:13,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-28 08:51:43] 2026-03-28 12:51:13,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-28 08:51:43] 2026-03-28 12:51:13,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-28 08:51:43] 2026-03-28 12:51:13,820 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-28 08:51:43] 2026-03-28 12:51:13,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-28 08:51:43] 2026-03-28 12:51:13,820 | INFO     | will abort loop
[2026-03-28 08:51:43] 2026-03-28 12:51:14,402 | INFO     | all data control threads have been joined
[2026-03-28 08:51:43] 2026-03-28 12:51:14,510 | INFO     | [job] retrieve thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,513 | INFO     | [job] queue monitor thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,557 | INFO     | all payload control threads have been joined
[2026-03-28 08:51:43] 2026-03-28 12:51:14,635 | INFO     | [payload] validate_post thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,675 | INFO     | [payload] validate_pre thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,825 | INFO     | [job] job monitor thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,892 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:14,946 | INFO     | all job control threads have been joined
[2026-03-28 08:51:43] 2026-03-28 12:51:15,403 | INFO     | [data] control thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,430 | INFO     | [payload] failed_post thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,514 | INFO     | [data] copytool_out thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,563 | INFO     | [payload] control thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,587 | INFO     | [job] validate thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,635 | INFO     | [job] create_data_payload thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,718 | INFO     | [payload] execute_payloads thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,848 | INFO     | [data] copytool_in thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:15,951 | INFO     | [job] control thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:17,515 | INFO     | [data] queue_monitor thread has finished
[2026-03-28 08:51:43] 2026-03-28 12:51:23,520 | INFO     | [monitor] cgroup control has ended
[2026-03-28 08:51:43] 2026-03-28 12:51:25,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322809792320)>', '<ExcThread(monitor, started 140322084484864)>']
[2026-03-28 08:51:43] 2026-03-28 12:51:30,587 | INFO     | all workflow threads have been joined
[2026-03-28 08:51:43] 2026-03-28 12:51:30,587 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-28 08:51:43] 2026-03-28 12:51:30,588 | INFO     | traces error code: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:30,588 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-28 08:51:43] 2026-03-28 12:51:43,452 | INFO     | PID=24122 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-28 08:51:43] 2026-03-28 12:51:43,452 | INFO     | found 0 job(s) in 20 queues
[2026-03-28 08:51:43] 2026-03-28 12:51:43,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-28 08:51:43] 2026-03-28 12:51:43,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-28 08:51:43] 2026-03-28 12:51:43,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-28 08:51:43] 2026-03-28 12:51:43,453 | CRITICAL | thread 'MainThread' is not alive
[2026-03-28 08:51:43] 2026-03-28 12:51:43,453 | INFO     | [monitor] control thread has ended
[2026-03-28 08:51:43] 2026-03-28 12:51:43,542 [wrapper] ==== pilot stdout END ====
[2026-03-28 08:51:43] 2026-03-28 12:51:43,544 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-28 08:51:43] 2026-03-28 12:51:43,545 [wrapper] pilotpid: 24122
[2026-03-28 08:51:43] 2026-03-28 12:51:43,550 [wrapper] Pilot exit status: 0
[2026-03-28 08:51:43] 2026-03-28 12:51:43,559 [wrapper] pandaids: 7065655824
[2026-03-28 08:51:43] 2026-03-28 12:51:43,586 [wrapper] cleanup supervisor_pilot 11955 24123
[2026-03-28 08:51:43] 2026-03-28 12:51:43,593 [wrapper] Test setup, not cleaning
[2026-03-28 08:51:43] 2026-03-28 12:51:43,594 [wrapper] apfmon messages muted
[2026-03-28 08:51:43] 2026-03-28 12:51:43,595 [wrapper] ==== wrapper stdout END ====
[2026-03-28 08:51:43] 2026-03-28 12:51:43,598 [wrapper] ==== wrapper stderr END ====
[2026-03-28 08:51:43]  *** Error codes and diagnostics ***
[2026-03-28 08:51:43]     "exeErrorCode": 0,
[2026-03-28 08:51:43]     "exeErrorDiag": "",
[2026-03-28 08:51:43]     "pilotErrorCode": 0,
[2026-03-28 08:51:43]     "pilotErrorDiag": "",
[2026-03-28 08:51:43]  *** Listing of results directory ***
[2026-03-28 08:51:43] total 408062
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc    585013 Mar 28 01:04 pilot3.tar.gz
[2026-03-28 08:51:43] -rwx------ 1 boinc boinc     36322 Mar 28 01:08 runpilot2-wrapper.sh
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc      5118 Mar 28 01:09 queuedata.json
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc       100 Mar 28 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-28 08:51:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 28 03:29 run_atlas
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc       105 Mar 28 03:29 job.xml
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc      6937 Mar 28 03:29 init_data.xml
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc 212869008 Mar 28 03:29 EVNT.48967100._000165.pool.root.1
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc     15845 Mar 28 03:29 start_atlas.sh
[2026-03-28 08:51:43] drwxrwx--x 2 boinc boinc      3452 Mar 28 03:29 shared
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc    597529 Mar 28 03:29 input.tar.gz
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc         0 Mar 28 03:29 boinc_lockfile
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc      2579 Mar 28 03:29 pandaJob.out
[2026-03-28 08:51:43] -rw------- 1 boinc boinc   1005061 Mar 28 03:29 agis_schedconf.cvmfs.json
[2026-03-28 08:51:43] -rw------- 1 boinc boinc       438 Mar 28 03:29 workernode_map.json
[2026-03-28 08:51:43] drwx------ 5 boinc boinc      3452 Mar 28 03:29 pilot3
[2026-03-28 08:51:43] -rw------- 1 boinc boinc 194561081 Mar 28 08:50 HITS.48967102._004278.pool.root.1
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc       530 Mar 28 08:50 boinc_task_state.xml
[2026-03-28 08:51:43] -rw------- 1 boinc boinc      1026 Mar 28 08:51 memory_monitor_summary.json
[2026-03-28 08:51:43] -rw------- 1 boinc boinc   1511579 Mar 28 08:51 agis_ddmendpoints.agis.ALL.json
[2026-03-28 08:51:43] -rw------- 1 boinc boinc    412044 Mar 28 08:51 log.48967102._004278.job.log.tgz.1
[2026-03-28 08:51:43] -rw------- 1 boinc boinc      6354 Mar 28 08:51 heartbeat.json
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc      8192 Mar 28 08:51 boinc_mmap_file
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc        28 Mar 28 08:51 wrapper_checkpoint.txt
[2026-03-28 08:51:43] -rw------- 1 boinc boinc       815 Mar 28 08:51 pilotlog.txt
[2026-03-28 08:51:43] -rw------- 1 boinc boinc        95 Mar 28 08:51 pilot_heartbeat.json
[2026-03-28 08:51:43] -rw------- 1 boinc boinc   2655770 Mar 28 08:51 log.48967102._004278.job.log.1
[2026-03-28 08:51:43] -rw------- 1 boinc boinc       357 Mar 28 08:51 output.list
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc       620 Mar 28 08:51 runtime_log
[2026-03-28 08:51:43] -rw------- 1 boinc boinc   3082240 Mar 28 08:51 result.tar.gz
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc      8920 Mar 28 08:51 runtime_log.err
[2026-03-28 08:51:43] -rw------- 1 boinc boinc       657 Mar 28 08:51 PjtLDm15aQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmuZJKDmxHHZkm.diag
[2026-03-28 08:51:43] -rw-r--r-- 1 boinc boinc     21466 Mar 28 08:51 stderr.txt
[2026-03-28 08:51:43] HITS file was successfully produced:
[2026-03-28 08:51:43] -rw------- 1 boinc boinc 194561081 Mar 28 08:50 shared/HITS.pool.root.1
[2026-03-28 08:51:43]  *** Contents of shared directory: ***
[2026-03-28 08:51:43] total 401892
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc 212869008 Mar 28 03:29 ATLAS.root_0
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc     15845 Mar 28 03:29 start_atlas.sh
[2026-03-28 08:51:43] -rw-r--r-- 2 boinc boinc    597529 Mar 28 03:29 input.tar.gz
[2026-03-28 08:51:43] -rw------- 1 boinc boinc 194561081 Mar 28 08:50 HITS.pool.root.1
[2026-03-28 08:51:43] -rw------- 1 boinc boinc   3082240 Mar 28 08:51 result.tar.gz
08:51:45 (20398): run_atlas exited; CPU time 38589.667019
08:51:45 (20398): called boinc_finish(0)

</stderr_txt>
]]>

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