Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:07 (18140): wrapper (7.7.26015): starting
20:26:07 (18140): wrapper: running run_atlas (--nthreads 8)
[2026-03-28 20:26:07] Arguments: --nthreads 8
[2026-03-28 20:26:07] Threads: 8
[2026-03-28 20:26:07] Checking for CVMFS
[2026-03-28 20:26:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-28 20:26:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-28 20:26:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-28 20:26:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-28 20:26:13] 2.11.2.0 32411 148152 136272 157814 0 53 18140751 25165825 4688 130560 153 52101684 99.836 34398513 1143 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-28 20:26:13] CVMFS is ok
[2026-03-28 20:26:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-28 20:26:13] Checking for apptainer binary...
[2026-03-28 20:26:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-28 20:26:13] Running /usr/bin/apptainer --version
[2026-03-28 20:26:13] apptainer version 1.3.2-1.el7
[2026-03-28 20:26:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-28 20:26:28] cg-vwn431.simple-grid.lan
[2026-03-28 20:26:28] apptainer works
[2026-03-28 20:26:28] Set ATHENA_PROC_NUMBER=8
[2026-03-28 20:26:28] Set ATHENA_CORE_NUMBER=8
[2026-03-28 20:26:28] Starting ATLAS job with PandaID=7071864370
[2026-03-28 20:26:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-29 11:05:41]  *** The last 200 lines of the pilot log: ***
[2026-03-29 11:05:41] 2026-03-29 09:04:50,001 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-7071864370/memory_monitor_summary.json (trf name=prmon)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,002 | INFO     | extracted standard info from prmon json
[2026-03-29 11:05:41] 2026-03-29 09:04:50,002 | INFO     | extracted standard memory fields from prmon json
[2026-03-29 11:05:41] 2026-03-29 09:04:50,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-29 11:05:41] 2026-03-29 09:04:50,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-29 11:05:41] 2026-03-29 09:04:50,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-29 11:05:41] 2026-03-29 09:04:50,022 | INFO     | fitting pss+swap vs Time
[2026-03-29 11:05:41] 2026-03-29 09:04:50,024 | INFO     | sum of square deviations: 155216984682.5
[2026-03-29 11:05:41] 2026-03-29 09:04:50,035 | INFO     | time since job start (48764s) is within the limit (345600.0s)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,058 | INFO     | sum of deviations: 491685547898.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,058 | INFO     | mean x: 1774750860.5
[2026-03-29 11:05:41] 2026-03-29 09:04:50,058 | INFO     | mean y: 2501011.869017632
[2026-03-29 11:05:41] 2026-03-29 09:04:50,058 | INFO     | intersect: -5619431091.839561
[2026-03-29 11:05:41] 2026-03-29 09:04:50,059 | INFO     | chi2: 7.583881607872384
[2026-03-29 11:05:41] 2026-03-29 09:04:50,061 | INFO     | sum of square deviations: 152303097490.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,082 | INFO     | sum of deviations: 541649141380.99994
[2026-03-29 11:05:41] 2026-03-29 09:04:50,083 | INFO     | mean x: 1774750708.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,083 | INFO     | mean y: 2503612.5107731307
[2026-03-29 11:05:41] 2026-03-29 09:04:50,083 | INFO     | intersect: -6309201224.724325
[2026-03-29 11:05:41] 2026-03-29 09:04:50,084 | INFO     | chi2: 6.830811696157849
[2026-03-29 11:05:41] 2026-03-29 09:04:50,084 | INFO     | current chi2=6.830811696157849 (change=9.929874313080218 %)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,084 | INFO     | right removable region: 788
[2026-03-29 11:05:41] 2026-03-29 09:04:50,086 | INFO     | sum of square deviations: 152303097490.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,106 | INFO     | sum of deviations: 201749168681.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,106 | INFO     | mean x: 1774751013.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,106 | INFO     | mean y: 2516183.3536121673
[2026-03-29 11:05:41] 2026-03-29 09:04:50,106 | INFO     | intersect: -2348417890.800868
[2026-03-29 11:05:41] 2026-03-29 09:04:50,108 | INFO     | chi2: 2.810384931575562
[2026-03-29 11:05:41] 2026-03-29 09:04:50,108 | INFO     | current chi2=2.810384931575562 (change=62.94265816784026 %)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,109 | INFO     | sum of square deviations: 149425908660.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,130 | INFO     | sum of deviations: 27749399498.499992
[2026-03-29 11:05:41] 2026-03-29 09:04:50,130 | INFO     | mean x: 1774751165.5
[2026-03-29 11:05:41] 2026-03-29 09:04:50,130 | INFO     | mean y: 2525393.485969388
[2026-03-29 11:05:41] 2026-03-29 09:04:50,130 | INFO     | intersect: -327057873.18799335
[2026-03-29 11:05:41] 2026-03-29 09:04:50,132 | INFO     | chi2: 0.9044543605814628
[2026-03-29 11:05:41] 2026-03-29 09:04:50,132 | INFO     | current chi2=0.9044543605814628 (change=67.81742065225185 %)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,133 | INFO     | sum of square deviations: 146585185630.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,153 | INFO     | sum of deviations: 9858322972.000015
[2026-03-29 11:05:41] 2026-03-29 09:04:50,153 | INFO     | mean x: 1774751318.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,153 | INFO     | mean y: 2526352.569961489
[2026-03-29 11:05:41] 2026-03-29 09:04:50,153 | INFO     | intersect: -116831354.77700779
[2026-03-29 11:05:41] 2026-03-29 09:04:50,154 | INFO     | chi2: 0.8828323443583119
[2026-03-29 11:05:41] 2026-03-29 09:04:50,155 | INFO     | current chi2=0.8828323443583119 (change=2.3906144041641104 %)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,155 | INFO     | left removable region: 30
[2026-03-29 11:05:41] 2026-03-29 09:04:50,156 | INFO     | sum of square deviations: 135047106969.5
[2026-03-29 11:05:41] 2026-03-29 09:04:50,174 | INFO     | sum of deviations: 115528756623.0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,174 | INFO     | mean x: 1774751592.5
[2026-03-29 11:05:41] 2026-03-29 09:04:50,175 | INFO     | mean y: 2526141.715039578
[2026-03-29 11:05:41] 2026-03-29 09:04:50,175 | INFO     | intersect: -1515720708.5675118
[2026-03-29 11:05:41] 2026-03-29 09:04:50,176 | INFO     | chi2: 0.0139884129536082
[2026-03-29 11:05:41] 2026-03-29 09:04:50,176 | INFO     | current memory leak: 0.86 B/s (using 758 data points, chi2=0.01)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,177 | INFO     | could have reported an average CPU frequency of 1999 MHz (31 samples)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | ..............................
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . Timing measurements:
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . get job = 0 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . initial setup = 106 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . payload setup = 216 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . stage-in = 0 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . payload execution = 48523 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . stage-out = 3 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,178 | INFO     | . log creation = 1 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,179 | INFO     | ..............................
[2026-03-29 11:05:41] 2026-03-29 09:04:50,312 | INFO     | 
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | job summary report
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | --------------------------------------------------
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | PanDA job id: 7071864370
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | task id: 49176159
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | errors: (none)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,313 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | pilot state: finished 
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | transexitcode: 0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | exeerrorcode: 0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | exeerrordiag: 
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | exitcode: 0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | exitmsg: OK
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | cpuconsumptiontime: 189917 s
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | nevents: 400
[2026-03-29 11:05:41] 2026-03-29 09:04:50,314 | INFO     | neventsw: 0
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | pid: 26739
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | pgrp: 26739
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | corecount: 8
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | event service: False
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | sizes: {0: 2279811, 1: 2280328, 12: 2280328, 48743: 2326142, 48748: 2335142, 48751: 2335520}
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | --------------------------------------------------
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | 
[2026-03-29 11:05:41] 2026-03-29 09:04:50,315 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-03-29 11:05:41] 2026-03-29 09:04:50,833 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,835 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,836 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-29 11:05:41] 2026-03-29 09:04:50,836 | INFO     | job 7071864370 has completed (purged errors)
[2026-03-29 11:05:41] 2026-03-29 09:04:50,836 | INFO     | overall cleanup function is called
[2026-03-29 11:05:41] 2026-03-29 09:04:51,196 | INFO     | PID=22238 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-29 11:05:41] 2026-03-29 09:04:51,197 | INFO     | .. there are 9 such processes running
[2026-03-29 11:05:41] 2026-03-29 09:04:51,846 | INFO     | --- collectZombieJob: --- 10, [26739]
[2026-03-29 11:05:41] 2026-03-29 09:04:51,846 | INFO     | zombie collector waiting for pid 26739
[2026-03-29 11:05:41] 2026-03-29 09:04:51,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-29 11:05:41] 2026-03-29 09:04:51,846 | INFO     | collected zombie processes
[2026-03-29 11:05:41] 2026-03-29 09:04:51,846 | INFO     | will attempt to kill all subprocesses of pid=26739
[2026-03-29 11:05:41] 2026-03-29 09:04:51,972 | INFO     | process IDs to be killed: [26739] (in reverse order)
[2026-03-29 11:05:41] 2026-03-29 09:04:52,696 | WARNING  | found no corresponding commands to process id(s)
[2026-03-29 11:05:41] 2026-03-29 09:04:52,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-29 11:05:41] 2026-03-29 09:04:52,700 | INFO     | did not find any defunct processes belonging to 26739
[2026-03-29 11:05:41] 2026-03-29 09:04:52,703 | INFO     | did not find any defunct processes belonging to 26739
[2026-03-29 11:05:41] 2026-03-29 09:04:52,704 | INFO     | ready for new job
[2026-03-29 11:05:41] 2026-03-29 09:04:52,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-29 11:05:41] 2026-03-29 09:04:52,708 | INFO     | **************************************
[2026-03-29 11:05:41] 2026-03-29 09:04:52,708 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-29 11:05:41] 2026-03-29 09:04:52,708 | INFO     | **************************************
[2026-03-29 11:05:41] 2026-03-29 09:04:52,708 | INFO     | 
[2026-03-29 11:05:41] 2026-03-29 09:04:52,709 | INFO     | pilot is running in a VM
[2026-03-29 11:05:41] 2026-03-29 09:04:52,709 | INFO     | architecture information:
[2026-03-29 11:05:41] 2026-03-29 09:04:52,710 | INFO     | executing command: cat /etc/os-release
[2026-03-29 11:05:41] 2026-03-29 09:04:52,941 | INFO     | cat /etc/os-release:
[2026-03-29 11:05:41] NAME="CentOS Linux"
[2026-03-29 11:05:41] VERSION="7 (Core)"
[2026-03-29 11:05:41] ID="centos"
[2026-03-29 11:05:41] ID_LIKE="rhel fedora"
[2026-03-29 11:05:41] VERSION_ID="7"
[2026-03-29 11:05:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-29 11:05:41] ANSI_COLOR="0;31"
[2026-03-29 11:05:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-29 11:05:41] HOME_URL="https://www.centos.org/"
[2026-03-29 11:05:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-29 11:05:41] 
[2026-03-29 11:05:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-29 11:05:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-29 11:05:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-29 11:05:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-29 11:05:41] 
[2026-03-29 11:05:41] 2026-03-29 09:04:52,942 | INFO     | **************************************
[2026-03-29 11:05:41] 2026-03-29 09:04:53,446 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-03-29 11:05:41] 2026-03-29 09:04:53,564 | INFO     | sufficient remaining disk space (496171483136 B)
[2026-03-29 11:05:41] 2026-03-29 09:04:53,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-29 11:05:41] 2026-03-29 09:04:53,564 | INFO     | current server update state: UPDATING_FINAL
[2026-03-29 11:05:41] 2026-03-29 09:04:53,564 | INFO     | update_server=False
[2026-03-29 11:05:41] 2026-03-29 09:04:53,565 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-29 11:05:41] 2026-03-29 09:04:53,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-29 11:05:41] 2026-03-29 09:04:53,565 | INFO     | aborting loop
[2026-03-29 11:05:41] 2026-03-29 09:04:53,832 | INFO     | all job control threads have been joined
[2026-03-29 11:05:41] 2026-03-29 09:04:54,076 | INFO     | all payload control threads have been joined
[2026-03-29 11:05:41] 2026-03-29 09:04:54,214 | INFO     | all data control threads have been joined
[2026-03-29 11:05:41] 2026-03-29 09:04:54,570 | INFO     | [job] retrieve thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:54,571 | INFO     | [job] job monitor thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:54,659 | INFO     | [payload] validate_post thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:54,840 | INFO     | [job] control thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-29 11:05:41] 2026-03-29 09:04:55,082 | INFO     | [payload] control thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,097 | INFO     | [data] copytool_in thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,147 | INFO     | [job] validate thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,220 | INFO     | [data] control thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,282 | INFO     | [job] create_data_payload thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-29 11:05:41] 2026-03-29 09:04:55,335 | INFO     | [payload] execute_payloads thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,871 | INFO     | [payload] failed_post thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:55,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-29 11:05:41] 2026-03-29 09:04:55,950 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:56,020 | INFO     | [payload] validate_pre thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:56,334 | INFO     | [job] queue monitor thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:57,054 | INFO     | [data] copytool_out thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:04:59,926 | INFO     | [data] queue_monitor thread has finished
[2026-03-29 11:05:41] 2026-03-29 09:05:23,375 | INFO     | PID=22238 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-29 11:05:41] 2026-03-29 09:05:23,375 | INFO     | .. there are 9 such processes running
[2026-03-29 11:05:41] 2026-03-29 09:05:23,375 | INFO     | found 0 job(s) in 20 queues
[2026-03-29 11:05:41] 2026-03-29 09:05:23,375 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-29 11:05:41] 2026-03-29 09:05:23,375 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-29 11:05:41] 2026-03-29 09:05:30,648 | INFO     | [monitor] cgroup control has ended
[2026-03-29 11:05:41] 2026-03-29 09:05:32,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140406018574144)>', '<ExcThread(monitor, started 140405366585088)>']
[2026-03-29 11:05:41] 2026-03-29 09:05:33,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-29 11:05:41] 2026-03-29 09:05:33,435 | INFO     | [monitor] control thread has ended
[2026-03-29 11:05:41] 2026-03-29 09:05:37,467 | INFO     | all workflow threads have been joined
[2026-03-29 11:05:41] 2026-03-29 09:05:37,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-29 11:05:41] 2026-03-29 09:05:37,467 | INFO     | traces error code: 0
[2026-03-29 11:05:41] 2026-03-29 09:05:37,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-29 11:05:41] 2026-03-29 09:05:37,801 [wrapper] ==== pilot stdout END ====
[2026-03-29 11:05:41] 2026-03-29 09:05:37,849 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-29 11:05:41] 2026-03-29 09:05:37,881 [wrapper] pilotpid: 22238
[2026-03-29 11:05:41] 2026-03-29 09:05:37,941 [wrapper] Pilot exit status: 0
[2026-03-29 11:05:41] 2026-03-29 09:05:38,467 [wrapper] pandaids: 7071864370
[2026-03-29 11:05:41] 2026-03-29 09:05:38,578 [wrapper] cleanup supervisor_pilot  7550 22239
[2026-03-29 11:05:41] 2026-03-29 09:05:38,706 [wrapper] Test setup, not cleaning
[2026-03-29 11:05:41] 2026-03-29 09:05:38,792 [wrapper] apfmon messages muted
[2026-03-29 11:05:41] 2026-03-29 09:05:38,880 [wrapper] ==== wrapper stdout END ====
[2026-03-29 11:05:41] 2026-03-29 09:05:39,000 [wrapper] ==== wrapper stderr END ====
[2026-03-29 11:05:41]  *** Error codes and diagnostics ***
[2026-03-29 11:05:41]     "exeErrorCode": 0,
[2026-03-29 11:05:41]     "exeErrorDiag": "",
[2026-03-29 11:05:41]     "pilotErrorCode": 0,
[2026-03-29 11:05:41]     "pilotErrorDiag": "",
[2026-03-29 11:05:41]  *** Listing of results directory ***
[2026-03-29 11:05:41] total 502812
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc    585013 Mar 28 05:11 pilot3.tar.gz
[2026-03-29 11:05:41] -rwx------. 1 boinc boinc     36322 Mar 28 05:12 runpilot2-wrapper.sh
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc      5118 Mar 28 05:12 queuedata.json
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc       100 Mar 28 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-29 11:05:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar 28 20:26 run_atlas
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc       105 Mar 28 20:26 job.xml
[2026-03-29 11:05:41] -rw-r--r--. 2 boinc boinc 242715699 Mar 28 20:26 EVNT.49132792._000004.pool.root.1
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc      6393 Mar 28 20:26 init_data.xml
[2026-03-29 11:05:41] -rw-r--r--. 2 boinc boinc     15845 Mar 28 20:26 start_atlas.sh
[2026-03-29 11:05:41] drwxrwx--x. 2 boinc boinc        68 Mar 28 20:26 shared
[2026-03-29 11:05:41] -rw-r--r--. 2 boinc boinc    597553 Mar 28 20:26 input.tar.gz
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc         0 Mar 28 20:26 boinc_lockfile
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc      2612 Mar 28 20:26 pandaJob.out
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc       415 Mar 28 20:31 workernode_map.json
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc   1003389 Mar 28 20:32 agis_schedconf.cvmfs.json
[2026-03-29 11:05:41] drwx------. 5 boinc boinc      4096 Mar 28 20:32 pilot3
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc 253040165 Mar 29 11:03 HITS.49176159._001187.pool.root.1
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc       532 Mar 29 11:03 boinc_task_state.xml
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc      1017 Mar 29 11:04 memory_monitor_summary.json
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc        95 Mar 29 11:04 pilot_heartbeat.json
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc   1511579 Mar 29 11:04 agis_ddmendpoints.agis.ALL.json
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc    919998 Mar 29 11:04 log.49176159._001187.job.log.tgz.1
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc      6313 Mar 29 11:04 heartbeat.json
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc      8192 Mar 29 11:05 boinc_mmap_file
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc        29 Mar 29 11:05 wrapper_checkpoint.txt
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc      4881 Mar 29 11:05 pilotlog.txt
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc   6681038 Mar 29 11:05 log.49176159._001187.job.log.1
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc       357 Mar 29 11:05 output.list
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc       620 Mar 29 11:05 runtime_log
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc   7618560 Mar 29 11:05 result.tar.gz
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc      8832 Mar 29 11:05 runtime_log.err
[2026-03-29 11:05:41] -rw-------. 1 boinc boinc       658 Mar 29 11:05 55FMDmcDaQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmQFJKDmFx8ebn.diag
[2026-03-29 11:05:41] -rw-r--r--. 1 boinc boinc     20818 Mar 29 11:05 stderr.txt
[2026-03-29 11:05:42] HITS file was successfully produced:
[2026-03-29 11:05:42] -rw-------. 1 boinc boinc 253040165 Mar 29 11:03 shared/HITS.pool.root.1
[2026-03-29 11:05:42]  *** Contents of shared directory: ***
[2026-03-29 11:05:42] total 492180
[2026-03-29 11:05:42] -rw-r--r--. 2 boinc boinc 242715699 Mar 28 20:26 ATLAS.root_0
[2026-03-29 11:05:42] -rw-r--r--. 2 boinc boinc     15845 Mar 28 20:26 start_atlas.sh
[2026-03-29 11:05:42] -rw-r--r--. 2 boinc boinc    597553 Mar 28 20:26 input.tar.gz
[2026-03-29 11:05:42] -rw-------. 1 boinc boinc 253040165 Mar 29 11:03 HITS.pool.root.1
[2026-03-29 11:05:42] -rw-------. 1 boinc boinc   7618560 Mar 29 11:05 result.tar.gz
11:05:43 (18140): run_atlas exited; CPU time 190739.945873
11:05:43 (18140): called boinc_finish(0)

</stderr_txt>
]]>

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