Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:04:21 (19582): wrapper (7.7.26015): starting
07:04:21 (19582): wrapper: running run_atlas (--nthreads 8)
[2026-03-28 07:04:21] Arguments: --nthreads 8
[2026-03-28 07:04:21] Threads: 8
[2026-03-28 07:04:21] Checking for CVMFS
[2026-03-28 07:04:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-28 07:04:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-28 07:04:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-28 07:04:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-28 07:04:21] 2.11.2.0 23466 147334 139060 157789 0 92 21471173 25165824 2909 130560 157 44562939 99.808 34294130 1026 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-28 07:04:21] CVMFS is ok
[2026-03-28 07:04:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-28 07:04:21] Checking for apptainer binary...
[2026-03-28 07:04:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-28 07:04:21] Running /usr/bin/apptainer --version
[2026-03-28 07:04:21] apptainer version 1.3.2-1.el7
[2026-03-28 07:04:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-28 07:04:22] cg-vwn389.simple-grid.lan
[2026-03-28 07:04:22] apptainer works
[2026-03-28 07:04:22] Set ATHENA_PROC_NUMBER=8
[2026-03-28 07:04:22] Set ATHENA_CORE_NUMBER=8
[2026-03-28 07:04:23] Starting ATLAS job with PandaID=7071839763
[2026-03-28 07:04:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-28 16:14:52]  *** The last 200 lines of the pilot log: ***
[2026-03-28 16:14:52] 2026-03-28 15:13:47,701 | INFO     | total number of processed events: 400 (read)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,703 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-7071839763/memory_monitor_summary.json (trf name=prmon)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,704 | INFO     | extracted standard info from prmon json
[2026-03-28 16:14:52] 2026-03-28 15:13:47,704 | INFO     | extracted standard memory fields from prmon json
[2026-03-28 16:14:52] 2026-03-28 15:13:47,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-28 16:14:52] 2026-03-28 15:13:47,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-28 16:14:52] 2026-03-28 15:13:47,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-28 16:14:52] 2026-03-28 15:13:47,715 | INFO     | fitting pss+swap vs Time
[2026-03-28 16:14:52] 2026-03-28 15:13:47,716 | INFO     | sum of square deviations: 48826794555.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,729 | INFO     | sum of deviations: 87429867994.49997
[2026-03-28 16:14:52] 2026-03-28 15:13:47,730 | INFO     | mean x: 1774694361.5
[2026-03-28 16:14:52] 2026-03-28 15:13:47,730 | INFO     | mean y: 2494144.1166666667
[2026-03-28 16:14:52] 2026-03-28 15:13:47,730 | INFO     | intersect: -3175295738.89009
[2026-03-28 16:14:52] 2026-03-28 15:13:47,731 | INFO     | chi2: 3.280660158180165
[2026-03-28 16:14:52] 2026-03-28 15:13:47,732 | INFO     | sum of square deviations: 47483011220.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,749 | INFO     | sum of deviations: 161071174538.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,750 | INFO     | mean x: 1774694209.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,750 | INFO     | mean y: 2502454.3476635516
[2026-03-28 16:14:52] 2026-03-28 15:13:47,750 | INFO     | intersect: -6017589223.599985
[2026-03-28 16:14:52] 2026-03-28 15:13:47,751 | INFO     | chi2: 1.6164630775618969
[2026-03-28 16:14:52] 2026-03-28 15:13:47,751 | INFO     | current chi2=1.6164630775618969 (change=50.72750606211602 %)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,752 | INFO     | sum of square deviations: 46164112072.5
[2026-03-28 16:14:52] 2026-03-28 15:13:47,761 | INFO     | sum of deviations: 159238968381.49994
[2026-03-28 16:14:52] 2026-03-28 15:13:47,761 | INFO     | mean x: 1774694056.5
[2026-03-28 16:14:52] 2026-03-28 15:13:47,761 | INFO     | mean y: 2502242.4396226415
[2026-03-28 16:14:52] 2026-03-28 15:13:47,761 | INFO     | intersect: -6119145896.400779
[2026-03-28 16:14:52] 2026-03-28 15:13:47,762 | INFO     | chi2: 1.616347713171811
[2026-03-28 16:14:52] 2026-03-28 15:13:47,762 | INFO     | current chi2=1.616347713171811 (change=0.0071368404071421 %)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,763 | INFO     | right removable region: 529
[2026-03-28 16:14:52] 2026-03-28 15:13:47,764 | INFO     | sum of square deviations: 47483011220.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,775 | INFO     | sum of deviations: 3730035808.000206
[2026-03-28 16:14:52] 2026-03-28 15:13:47,775 | INFO     | mean x: 1774694514.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,775 | INFO     | mean y: 2503602.213084112
[2026-03-28 16:14:52] 2026-03-28 15:13:47,775 | INFO     | intersect: -136907819.16478536
[2026-03-28 16:14:52] 2026-03-28 15:13:47,776 | INFO     | chi2: 1.8304483906508024
[2026-03-28 16:14:52] 2026-03-28 15:13:47,776 | INFO     | current chi2=1.8304483906508024 (change=44.20487638481331 %)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,777 | INFO     | sum of square deviations: 46164112072.5
[2026-03-28 16:14:52] 2026-03-28 15:13:47,787 | INFO     | sum of deviations: -13062715802.000008
[2026-03-28 16:14:52] 2026-03-28 15:13:47,787 | INFO     | mean x: 1774694666.5
[2026-03-28 16:14:52] 2026-03-28 15:13:47,788 | INFO     | mean y: 2505550.3622641508
[2026-03-28 16:14:52] 2026-03-28 15:13:47,788 | INFO     | intersect: 504677714.4755303
[2026-03-28 16:14:52] 2026-03-28 15:13:47,788 | INFO     | chi2: 1.7823774140486153
[2026-03-28 16:14:52] 2026-03-28 15:13:47,789 | INFO     | current chi2=1.7823774140486153 (change=2.62618584865405 %)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,789 | INFO     | left removable region: 20
[2026-03-28 16:14:52] 2026-03-28 15:13:47,790 | INFO     | sum of square deviations: 40891222510.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,799 | INFO     | sum of deviations: 27922102119.000004
[2026-03-28 16:14:52] 2026-03-28 15:13:47,800 | INFO     | mean x: 1774694636.0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,800 | INFO     | mean y: 2517836.4656188604
[2026-03-28 16:14:52] 2026-03-28 15:13:47,800 | INFO     | intersect: -1209312033.4854505
[2026-03-28 16:14:52] 2026-03-28 15:13:47,801 | INFO     | chi2: 0.00647902150442769
[2026-03-28 16:14:52] 2026-03-28 15:13:47,801 | INFO     | current memory leak: 0.68 B/s (using 509 data points, chi2=0.01)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,802 | INFO     | could have reported an average CPU frequency of 1999 MHz (22 samples)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,802 | INFO     | ..............................
[2026-03-28 16:14:52] 2026-03-28 15:13:47,802 | INFO     | . Timing measurements:
[2026-03-28 16:14:52] 2026-03-28 15:13:47,802 | INFO     | . get job = 0 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . initial setup = 7 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . payload setup = 16 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . stage-in = 0 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . payload execution = 32900 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . stage-out = 5 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | . log creation = 1 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,803 | INFO     | ..............................
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | 
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | job summary report
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | --------------------------------------------------
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | PanDA job id: 7071839763
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | task id: 49179615
[2026-03-28 16:14:52] 2026-03-28 15:13:47,925 | INFO     | errors: (none)
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | pilot state: finished 
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | transexitcode: 0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | exeerrorcode: 0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | exeerrordiag: 
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | exitcode: 0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | exitmsg: OK
[2026-03-28 16:14:52] 2026-03-28 15:13:47,926 | INFO     | cpuconsumptiontime: 131483 s
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | nevents: 400
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | neventsw: 0
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | pid: 27790
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | pgrp: 27790
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | corecount: 8
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | event service: False
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | sizes: {0: 2280180, 1: 2280240, 11: 2280268, 32921: 2319130, 32927: 2328158, 32928: 2328214, 32930: 2328536}
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | --------------------------------------------------
[2026-03-28 16:14:52] 2026-03-28 15:13:47,927 | INFO     | 
[2026-03-28 16:14:52] 2026-03-28 15:13:47,928 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-03-28 16:14:52] 2026-03-28 15:13:48,519 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,522 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-28 16:14:52] 2026-03-28 15:13:48,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,522 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-28 16:14:52] 2026-03-28 15:13:48,522 | INFO     | job 7071839763 has completed (purged errors)
[2026-03-28 16:14:52] 2026-03-28 15:13:48,522 | INFO     | overall cleanup function is called
[2026-03-28 16:14:52] 2026-03-28 15:13:49,531 | INFO     | --- collectZombieJob: --- 10, [27790]
[2026-03-28 16:14:52] 2026-03-28 15:13:49,531 | INFO     | zombie collector waiting for pid 27790
[2026-03-28 16:14:52] 2026-03-28 15:13:49,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-28 16:14:52] 2026-03-28 15:13:49,531 | INFO     | collected zombie processes
[2026-03-28 16:14:52] 2026-03-28 15:13:49,532 | INFO     | will attempt to kill all subprocesses of pid=27790
[2026-03-28 16:14:52] 2026-03-28 15:13:49,665 | INFO     | process IDs to be killed: [27790] (in reverse order)
[2026-03-28 16:14:52] 2026-03-28 15:13:50,765 | WARNING  | found no corresponding commands to process id(s)
[2026-03-28 16:14:52] 2026-03-28 15:13:50,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-28 16:14:52] 2026-03-28 15:13:50,768 | INFO     | did not find any defunct processes belonging to 27790
[2026-03-28 16:14:52] 2026-03-28 15:13:50,771 | INFO     | did not find any defunct processes belonging to 27790
[2026-03-28 16:14:52] 2026-03-28 15:13:50,772 | INFO     | ready for new job
[2026-03-28 16:14:52] 2026-03-28 15:13:50,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-28 16:14:52] 2026-03-28 15:13:50,778 | INFO     | **************************************
[2026-03-28 16:14:52] 2026-03-28 15:13:50,778 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-28 16:14:52] 2026-03-28 15:13:50,778 | INFO     | **************************************
[2026-03-28 16:14:52] 2026-03-28 15:13:50,778 | INFO     | 
[2026-03-28 16:14:52] 2026-03-28 15:13:50,779 | INFO     | pilot is running in a VM
[2026-03-28 16:14:52] 2026-03-28 15:13:50,779 | INFO     | architecture information:
[2026-03-28 16:14:52] 2026-03-28 15:13:50,785 | INFO     | executing command: cat /etc/os-release
[2026-03-28 16:14:52] 2026-03-28 15:13:50,944 | INFO     | cat /etc/os-release:
[2026-03-28 16:14:52] NAME="CentOS Linux"
[2026-03-28 16:14:52] VERSION="7 (Core)"
[2026-03-28 16:14:52] ID="centos"
[2026-03-28 16:14:52] ID_LIKE="rhel fedora"
[2026-03-28 16:14:52] VERSION_ID="7"
[2026-03-28 16:14:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-28 16:14:52] ANSI_COLOR="0;31"
[2026-03-28 16:14:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-28 16:14:52] HOME_URL="https://www.centos.org/"
[2026-03-28 16:14:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-28 16:14:52] 
[2026-03-28 16:14:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-28 16:14:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-28 16:14:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-28 16:14:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-28 16:14:52] 
[2026-03-28 16:14:52] 2026-03-28 15:13:50,945 | INFO     | **************************************
[2026-03-28 16:14:52] 2026-03-28 15:13:51,448 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-03-28 16:14:52] 2026-03-28 15:13:51,704 | INFO     | sufficient remaining disk space (496231251968 B)
[2026-03-28 16:14:52] 2026-03-28 15:13:51,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-28 16:14:52] 2026-03-28 15:13:51,705 | INFO     | current server update state: UPDATING_FINAL
[2026-03-28 16:14:52] 2026-03-28 15:13:51,705 | INFO     | update_server=False
[2026-03-28 16:14:52] 2026-03-28 15:13:51,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-28 16:14:52] 2026-03-28 15:13:51,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-28 16:14:52] 2026-03-28 15:13:51,854 | INFO     | all payload control threads have been joined
[2026-03-28 16:14:52] 2026-03-28 15:13:51,943 | INFO     | all data control threads have been joined
[2026-03-28 16:14:52] 2026-03-28 15:13:52,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-28 16:14:52] 2026-03-28 15:13:52,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-28 16:14:52] 2026-03-28 15:13:52,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-28 16:14:52] 2026-03-28 15:13:52,173 | INFO     | will abort loop
[2026-03-28 16:14:52] 2026-03-28 15:13:52,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-28 16:14:52] 2026-03-28 15:13:52,710 | INFO     | [job] retrieve thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,738 | INFO     | all job control threads have been joined
[2026-03-28 16:14:52] 2026-03-28 15:13:52,761 | INFO     | [job] create_data_payload thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,799 | INFO     | [payload] execute_payloads thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,860 | INFO     | [payload] control thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,907 | INFO     | [payload] failed_post thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-28 16:14:52] 2026-03-28 15:13:52,949 | INFO     | [data] control thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:52,956 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,178 | INFO     | [job] job monitor thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,437 | INFO     | [job] validate thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,511 | INFO     | [data] copytool_in thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,578 | INFO     | [payload] validate_pre thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,744 | INFO     | [job] control thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,886 | INFO     | [payload] validate_post thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:53,946 | INFO     | [job] queue monitor thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:54,454 | INFO     | [data] copytool_out thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:13:55,717 | INFO     | [data] queue_monitor thread has finished
[2026-03-28 16:14:52] 2026-03-28 15:14:20,505 | INFO     | PID=23304 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-28 16:14:52] 2026-03-28 15:14:20,506 | INFO     | .. there are 9 such processes running
[2026-03-28 16:14:52] 2026-03-28 15:14:20,506 | INFO     | found 0 job(s) in 20 queues
[2026-03-28 16:14:52] 2026-03-28 15:14:20,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-28 16:14:52] 2026-03-28 15:14:20,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-28 16:14:52] 2026-03-28 15:14:42,799 | INFO     | [monitor] cgroup control has ended
[2026-03-28 16:14:52] 2026-03-28 15:14:44,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366915098432)>', '<ExcThread(monitor, started 140366460196608)>']
[2026-03-28 16:14:52] 2026-03-28 15:14:44,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-28 16:14:52] 2026-03-28 15:14:44,649 | INFO     | [monitor] control thread has ended
[2026-03-28 16:14:52] 2026-03-28 15:14:49,546 | INFO     | all workflow threads have been joined
[2026-03-28 16:14:52] 2026-03-28 15:14:49,546 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-28 16:14:52] 2026-03-28 15:14:49,546 | INFO     | traces error code: 0
[2026-03-28 16:14:52] 2026-03-28 15:14:49,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-28 16:14:52] 2026-03-28 15:14:49,829 [wrapper] ==== pilot stdout END ====
[2026-03-28 16:14:52] 2026-03-28 15:14:49,879 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-28 16:14:52] 2026-03-28 15:14:49,908 [wrapper] pilotpid: 23304
[2026-03-28 16:14:52] 2026-03-28 15:14:49,979 [wrapper] Pilot exit status: 0
[2026-03-28 16:14:52] 2026-03-28 15:14:50,407 [wrapper] pandaids: 7071839763
[2026-03-28 16:14:52] 2026-03-28 15:14:50,729 [wrapper] cleanup supervisor_pilot  2802 23305
[2026-03-28 16:14:52] 2026-03-28 15:14:50,744 [wrapper] Test setup, not cleaning
[2026-03-28 16:14:52] 2026-03-28 15:14:50,747 [wrapper] apfmon messages muted
[2026-03-28 16:14:52] 2026-03-28 15:14:50,751 [wrapper] ==== wrapper stdout END ====
[2026-03-28 16:14:52] 2026-03-28 15:14:50,765 [wrapper] ==== wrapper stderr END ====
[2026-03-28 16:14:52]  *** Error codes and diagnostics ***
[2026-03-28 16:14:52]     "exeErrorCode": 0,
[2026-03-28 16:14:52]     "exeErrorDiag": "",
[2026-03-28 16:14:52]     "pilotErrorCode": 0,
[2026-03-28 16:14:52]     "pilotErrorDiag": "",
[2026-03-28 16:14:52]  *** Listing of results directory ***
[2026-03-28 16:14:53] total 481268
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc    585013 Mar 28 03:21 pilot3.tar.gz
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc      5118 Mar 28 03:38 queuedata.json
[2026-03-28 16:14:53] -rwx------. 1 boinc boinc     36322 Mar 28 03:38 runpilot2-wrapper.sh
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc       100 Mar 28 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-28 16:14:53] -rwxr-xr-x. 1 boinc boinc      7986 Mar 28 07:04 run_atlas
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc       105 Mar 28 07:04 job.xml
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc      6391 Mar 28 07:04 init_data.xml
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc 244275024 Mar 28 07:04 EVNT.49131861._000020.pool.root.1
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc     15845 Mar 28 07:04 start_atlas.sh
[2026-03-28 16:14:53] drwxrwx--x. 2 boinc boinc        68 Mar 28 07:04 shared
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc    597550 Mar 28 07:04 input.tar.gz
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc         0 Mar 28 07:04 boinc_lockfile
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc      2605 Mar 28 07:04 pandaJob.out
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc   1005053 Mar 28 07:04 agis_schedconf.cvmfs.json
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc       415 Mar 28 07:04 workernode_map.json
[2026-03-28 16:14:53] drwx------. 5 boinc boinc      4096 Mar 28 07:04 pilot3
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc 234093448 Mar 28 16:12 HITS.49179615._001418.pool.root.1
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc       531 Mar 28 16:12 boinc_task_state.xml
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc        95 Mar 28 16:13 pilot_heartbeat.json
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc      1013 Mar 28 16:13 memory_monitor_summary.json
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc   1511579 Mar 28 16:13 agis_ddmendpoints.agis.ALL.json
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc    713591 Mar 28 16:13 log.49179615._001418.job.log.tgz.1
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc      6321 Mar 28 16:13 heartbeat.json
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc        29 Mar 28 16:14 wrapper_checkpoint.txt
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc      8192 Mar 28 16:14 boinc_mmap_file
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc      5067 Mar 28 16:14 pilotlog.txt
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc   4549127 Mar 28 16:14 log.49179615._001418.job.log.1
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc       357 Mar 28 16:14 output.list
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc       620 Mar 28 16:14 runtime_log
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc   5283840 Mar 28 16:14 result.tar.gz
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc      8832 Mar 28 16:14 runtime_log.err
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc       658 Mar 28 16:14 LnBNDmekYQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmNrIKDmOEzXxm.diag
[2026-03-28 16:14:53] -rw-r--r--. 1 boinc boinc     20728 Mar 28 16:14 stderr.txt
[2026-03-28 16:14:53] HITS file was successfully produced:
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc 234093448 Mar 28 16:12 shared/HITS.pool.root.1
[2026-03-28 16:14:53]  *** Contents of shared directory: ***
[2026-03-28 16:14:53] total 472920
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc 244275024 Mar 28 07:04 ATLAS.root_0
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc     15845 Mar 28 07:04 start_atlas.sh
[2026-03-28 16:14:53] -rw-r--r--. 2 boinc boinc    597550 Mar 28 07:04 input.tar.gz
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc 234093448 Mar 28 16:12 HITS.pool.root.1
[2026-03-28 16:14:53] -rw-------. 1 boinc boinc   5283840 Mar 28 16:14 result.tar.gz
16:14:54 (19582): run_atlas exited; CPU time 131999.060548
16:14:54 (19582): called boinc_finish(0)

</stderr_txt>
]]>

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