Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:35:22 (3012782): wrapper (7.7.26015): starting
18:35:22 (3012782): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 18:35:22] Arguments: --nthreads 4
[2026-04-01 18:35:22] Threads: 4
[2026-04-01 18:35:22] Checking for CVMFS
[2026-04-01 18:35:22] No cvmfs_config command found, will try listing directly
[2026-04-01 18:35:22] CVMFS is ok
[2026-04-01 18:35:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 18:35:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 18:35:23] Further information can be found at the LHC@home message board.
[2026-04-01 18:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 18:35:23] Checking for apptainer binary...
[2026-04-01 18:35:23] which: no apptainer in ((null))
[2026-04-01 18:35:23] apptainer is not installed, using version from CVMFS
[2026-04-01 18:35:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 18:35:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-01 18:35:23] apptainer works
[2026-04-01 18:35:23] Set ATHENA_PROC_NUMBER=4
[2026-04-01 18:35:23] Set ATHENA_CORE_NUMBER=4
[2026-04-01 18:35:23] Starting ATLAS job with PandaID=7071840671
[2026-04-01 18:35:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:30:06 (3247656): wrapper (7.7.26015): starting
19:30:06 (3247656): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 19:30:06] Arguments: --nthreads 4
[2026-04-01 19:30:06] Threads: 4
[2026-04-01 19:30:06] This job has been restarted, cleaning up previous attempt
[2026-04-01 19:30:06] Checking for CVMFS
[2026-04-01 19:30:06] No cvmfs_config command found, will try listing directly
[2026-04-01 19:30:06] CVMFS is ok
[2026-04-01 19:30:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 19:30:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 19:30:06] Further information can be found at the LHC@home message board.
[2026-04-01 19:30:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 19:30:06] Checking for apptainer binary...
[2026-04-01 19:30:06] which: no apptainer in ((null))
[2026-04-01 19:30:06] apptainer is not installed, using version from CVMFS
[2026-04-01 19:30:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 19:30:06] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-01 19:30:06] apptainer works
[2026-04-01 19:30:06] Set ATHENA_PROC_NUMBER=4
[2026-04-01 19:30:06] Set ATHENA_CORE_NUMBER=4
[2026-04-01 19:30:06] Starting ATLAS job with PandaID=7071840671
[2026-04-01 19:30:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-02 01:38:16]  *** The last 200 lines of the pilot log: ***
[2026-04-02 01:38:16] 2026-04-01 23:37:40,129 | INFO     | intersect: -6893668791.735064
[2026-04-02 01:38:16] 2026-04-01 23:37:40,129 | INFO     | chi2: 1.3086916976704097
[2026-04-02 01:38:16] 2026-04-01 23:37:40,130 | INFO     | sum of square deviations: 13990234405.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,133 | INFO     | sum of deviations: 55753487600.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,133 | INFO     | mean x: 1775075482.5
[2026-04-02 01:38:16] 2026-04-01 23:37:40,133 | INFO     | mean y: 2323909.1516853934
[2026-04-02 01:38:16] 2026-04-01 23:37:40,133 | INFO     | intersect: -7071656843.254998
[2026-04-02 01:38:16] 2026-04-01 23:37:40,134 | INFO     | chi2: 1.3088489460546024
[2026-04-02 01:38:16] 2026-04-01 23:37:40,134 | INFO     | current chi2=1.3088489460546024 (change=-0.012015693571881623 %)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,134 | INFO     | right removable region: 355
[2026-04-02 01:38:16] 2026-04-01 23:37:40,135 | INFO     | sum of square deviations: 13990234405.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,138 | INFO     | sum of deviations: 9577139019.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,138 | INFO     | mean x: 1775075787.5
[2026-04-02 01:38:16] 2026-04-01 23:37:40,138 | INFO     | mean y: 2336076.387640449
[2026-04-02 01:38:16] 2026-04-01 23:37:40,138 | INFO     | intersect: -1212807794.2592075
[2026-04-02 01:38:16] 2026-04-01 23:37:40,139 | INFO     | chi2: 0.001527387135924508
[2026-04-02 01:38:16] 2026-04-01 23:37:40,139 | INFO     | current chi2=0.001527387135924508 (change=99.88328900239503 %)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,140 | INFO     | sum of square deviations: 13408995600.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,143 | INFO     | sum of deviations: 7799765305.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,143 | INFO     | mean x: 1775075940.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,143 | INFO     | mean y: 2336541.6467236467
[2026-04-02 01:38:16] 2026-04-01 23:37:40,143 | INFO     | intersect: -1030192377.2644186
[2026-04-02 01:38:16] 2026-04-01 23:37:40,144 | INFO     | chi2: 0.000807915375655717
[2026-04-02 01:38:16] 2026-04-01 23:37:40,144 | INFO     | current chi2=0.000807915375655717 (change=47.10474138132006 %)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,144 | INFO     | sum of square deviations: 12844082682.5
[2026-04-02 01:38:16] 2026-04-01 23:37:40,148 | INFO     | sum of deviations: 6777288611.999999
[2026-04-02 01:38:16] 2026-04-01 23:37:40,148 | INFO     | mean x: 1775076092.5
[2026-04-02 01:38:16] 2026-04-01 23:37:40,148 | INFO     | mean y: 2336817.3641618495
[2026-04-02 01:38:16] 2026-04-01 23:37:40,148 | INFO     | intersect: -934297061.7936544
[2026-04-02 01:38:16] 2026-04-01 23:37:40,149 | INFO     | chi2: 0.0006329857320389057
[2026-04-02 01:38:16] 2026-04-01 23:37:40,149 | INFO     | current chi2=0.0006329857320389057 (change=21.651976046975914 %)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,149 | INFO     | left removable region: 30
[2026-04-02 01:38:16] 2026-04-01 23:37:40,149 | INFO     | sum of square deviations: 10644478650.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,152 | INFO     | sum of deviations: 6400632705.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,152 | INFO     | mean x: 1775076367.0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,152 | INFO     | mean y: 2336776.043076923
[2026-04-02 01:38:16] 2026-04-01 23:37:40,152 | INFO     | intersect: -1065034602.3092846
[2026-04-02 01:38:16] 2026-04-01 23:37:40,153 | INFO     | chi2: 0.00043052272310865745
[2026-04-02 01:38:16] 2026-04-01 23:37:40,153 | INFO     | current memory leak: 0.60 B/s (using 325 data points, chi2=0.00)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,154 | INFO     | could have reported an average CPU frequency of 2678 MHz (16 samples)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,154 | INFO     | ..............................
[2026-04-02 01:38:16] 2026-04-01 23:37:40,154 | INFO     | . Timing measurements:
[2026-04-02 01:38:16] 2026-04-01 23:37:40,154 | INFO     | . get job = 0 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,154 | INFO     | . initial setup = 1 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,155 | INFO     | . payload setup = 14 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,155 | INFO     | . stage-in = 0 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,155 | INFO     | . payload execution = 22005 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,159 | INFO     | . stage-out = 1 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,159 | INFO     | . log creation = 0 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,159 | INFO     | ..............................
[2026-04-02 01:38:16] 2026-04-01 23:37:40,661 | INFO     | 
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | job summary report
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | --------------------------------------------------
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | PanDA job id: 7071840671
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | task id: 49179468
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | errors: (none)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | pilot state: finished 
[2026-04-02 01:38:16] 2026-04-01 23:37:40,662 | INFO     | transexitcode: 0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | exeerrorcode: 0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | exeerrordiag: 
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | exitcode: 0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | exitmsg: OK
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | cpuconsumptiontime: 84811 s
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | nevents: 400
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | neventsw: 0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | pid: 3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | pgrp: 3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | corecount: 4
[2026-04-02 01:38:16] 2026-04-01 23:37:40,663 | INFO     | event service: False
[2026-04-02 01:38:16] 2026-04-01 23:37:40,664 | INFO     | sizes: {0: 2279822, 1: 2280283, 11: 2280283, 22024: 2315370, 22025: 2324392, 22026: 2324448, 22027: 2324770}
[2026-04-02 01:38:16] 2026-04-01 23:37:40,664 | INFO     | --------------------------------------------------
[2026-04-02 01:38:16] 2026-04-01 23:37:40,664 | INFO     | 
[2026-04-02 01:38:16] 2026-04-01 23:37:40,664 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-04-02 01:38:16] 2026-04-01 23:37:40,697 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,699 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-02 01:38:16] 2026-04-01 23:37:40,700 | INFO     | job 7071840671 has completed (purged errors)
[2026-04-02 01:38:16] 2026-04-01 23:37:40,700 | INFO     | overall cleanup function is called
[2026-04-02 01:38:16] 2026-04-01 23:37:41,061 | WARNING  | process 3289787 can no longer be monitored (due to stat problems) - aborting
[2026-04-02 01:38:16] 2026-04-01 23:37:41,716 | INFO     | --- collectZombieJob: --- 10, [3289787]
[2026-04-02 01:38:16] 2026-04-01 23:37:41,716 | INFO     | zombie collector waiting for pid 3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:41,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-02 01:38:16] 2026-04-01 23:37:41,717 | INFO     | collected zombie processes
[2026-04-02 01:38:16] 2026-04-01 23:37:41,717 | INFO     | will attempt to kill all subprocesses of pid=3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:43,142 | INFO     | PID=3269095 has CPU usage=24.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-02 01:38:16] 2026-04-01 23:37:43,143 | INFO     | .. there are 23 such processes running
[2026-04-02 01:38:16] 2026-04-01 23:37:43,366 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 01:38:16] 2026-04-01 23:37:43,367 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 01:38:16] 2026-04-01 23:37:43,368 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-02 01:38:16] 2026-04-01 23:37:43,368 | WARNING  | maxPSS not found in memory monitor output
[2026-04-02 01:38:16] 2026-04-01 23:37:43,369 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7071840671/payload.stdout) since it has not been created yet
[2026-04-02 01:38:16] 2026-04-01 23:37:43,369 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-04-02 01:38:16] 2026-04-01 23:37:43,397 | INFO     | sufficient remaining disk space (250936819712 B)
[2026-04-02 01:38:16] 2026-04-01 23:37:43,397 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-02 01:38:16] 2026-04-01 23:37:43,397 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7071840671/HITS.49179468._000496.pool.root.1 since it does not exist
[2026-04-02 01:38:16] 2026-04-01 23:37:44,479 | INFO     | process IDs to be killed: [3289787] (in reverse order)
[2026-04-02 01:38:16] 2026-04-01 23:37:44,840 | WARNING  | found no corresponding commands to process id(s)
[2026-04-02 01:38:16] 2026-04-01 23:37:44,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-02 01:38:16] 2026-04-01 23:37:44,910 | INFO     | number of running child processes to parent process 3289787: 1
[2026-04-02 01:38:16] 2026-04-01 23:37:44,910 | INFO     | maximum number of monitored processes: 6
[2026-04-02 01:38:16] 2026-04-01 23:37:44,910 | INFO     | aborting job monitoring since job object (job id=7071840671) has expired
[2026-04-02 01:38:16] 2026-04-01 23:37:44,915 | INFO     | did not find any defunct processes belonging to 3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:44,952 | INFO     | did not find any defunct processes belonging to 3289787
[2026-04-02 01:38:16] 2026-04-01 23:37:44,952 | INFO     | ready for new job
[2026-04-02 01:38:16] 2026-04-01 23:37:44,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-02 01:38:16] 2026-04-01 23:37:44,956 | INFO     | **************************************
[2026-04-02 01:38:16] 2026-04-01 23:37:44,957 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-02 01:38:16] 2026-04-01 23:37:44,957 | INFO     | **************************************
[2026-04-02 01:38:16] 2026-04-01 23:37:44,957 | INFO     | 
[2026-04-02 01:38:16] 2026-04-01 23:37:44,966 | INFO     | architecture information:
[2026-04-02 01:38:16] 2026-04-01 23:37:44,966 | INFO     | executing command: cat /etc/os-release
[2026-04-02 01:38:16] 2026-04-01 23:37:44,992 | INFO     | cat /etc/os-release:
[2026-04-02 01:38:16] NAME="CentOS Linux"
[2026-04-02 01:38:16] VERSION="7 (Core)"
[2026-04-02 01:38:16] ID="centos"
[2026-04-02 01:38:16] ID_LIKE="rhel fedora"
[2026-04-02 01:38:16] VERSION_ID="7"
[2026-04-02 01:38:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-02 01:38:16] ANSI_COLOR="0;31"
[2026-04-02 01:38:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-02 01:38:16] HOME_URL="https://www.centos.org/"
[2026-04-02 01:38:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-02 01:38:16] 
[2026-04-02 01:38:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-02 01:38:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-02 01:38:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-02 01:38:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-02 01:38:16] 
[2026-04-02 01:38:16] 2026-04-01 23:37:44,992 | INFO     | **************************************
[2026-04-02 01:38:16] 2026-04-01 23:37:45,495 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-04-02 01:38:16] 2026-04-01 23:37:45,522 | INFO     | sufficient remaining disk space (250939965440 B)
[2026-04-02 01:38:16] 2026-04-01 23:37:45,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-02 01:38:16] 2026-04-01 23:37:45,522 | INFO     | current server update state: UPDATING_FINAL
[2026-04-02 01:38:16] 2026-04-01 23:37:45,522 | INFO     | update_server=False
[2026-04-02 01:38:16] 2026-04-01 23:37:45,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-02 01:38:16] 2026-04-01 23:37:45,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-02 01:38:16] 2026-04-01 23:37:45,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-02 01:38:16] 2026-04-01 23:37:45,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-02 01:38:16] 2026-04-01 23:37:45,524 | INFO     | all job control threads have been joined
[2026-04-02 01:38:16] 2026-04-01 23:37:45,524 | INFO     | will abort loop
[2026-04-02 01:38:16] 2026-04-01 23:37:45,766 | INFO     | all data control threads have been joined
[2026-04-02 01:38:16] 2026-04-01 23:37:45,885 | INFO     | all payload control threads have been joined
[2026-04-02 01:38:16] 2026-04-01 23:37:46,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-02 01:38:16] 2026-04-01 23:37:46,528 | INFO     | [job] retrieve thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,529 | INFO     | [job] queue monitor thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,530 | INFO     | [job] control thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,530 | INFO     | [job] job monitor thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,762 | INFO     | [payload] execute_payloads thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,771 | INFO     | [data] control thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,808 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,818 | INFO     | [payload] validate_pre thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:46,890 | INFO     | [payload] control thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:47,572 | INFO     | [payload] failed_post thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:47,834 | INFO     | [job] create_data_payload thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:47,900 | INFO     | [data] copytool_in thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:47,958 | INFO     | [job] validate thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:47,992 | INFO     | [payload] validate_post thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:48,497 | INFO     | [data] copytool_out thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:49,530 | INFO     | [data] queue_monitor thread has finished
[2026-04-02 01:38:16] 2026-04-01 23:37:58,097 | INFO     | [monitor] cgroup control has ended
[2026-04-02 01:38:16] 2026-04-01 23:37:58,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22996508682048)>', '<ExcThread(monitor, started 22996269139712)>']
[2026-04-02 01:38:16] 2026-04-01 23:38:03,417 | INFO     | all workflow threads have been joined
[2026-04-02 01:38:16] 2026-04-01 23:38:03,417 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-02 01:38:16] 2026-04-01 23:38:03,417 | INFO     | traces error code: 0
[2026-04-02 01:38:16] 2026-04-01 23:38:03,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-02 01:38:16] 2026-04-01 23:38:16,222 | INFO     | PID=3269095 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-02 01:38:16] 2026-04-01 23:38:16,224 | INFO     | .. there are 23 such processes running
[2026-04-02 01:38:16] 2026-04-01 23:38:16,224 | INFO     | found 0 job(s) in 20 queues
[2026-04-02 01:38:16] 2026-04-01 23:38:16,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-02 01:38:16] 2026-04-01 23:38:16,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-02 01:38:16] 2026-04-01 23:38:16,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-02 01:38:16] 2026-04-01 23:38:16,225 | INFO     | [monitor] control thread has ended
[2026-04-02 01:38:16] 2026-04-01 23:38:16,396 [wrapper] ==== pilot stdout END ====
[2026-04-02 01:38:16] 2026-04-01 23:38:16,401 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-02 01:38:16] 2026-04-01 23:38:16,405 [wrapper] pilotpid: 3269095
[2026-04-02 01:38:16] 2026-04-01 23:38:16,408 [wrapper] Pilot exit status: 0
[2026-04-02 01:38:16] 2026-04-01 23:38:16,425 [wrapper] pandaids: 7071840671 7071840671
[2026-04-02 01:38:16] 2026-04-01 23:38:16,635 [wrapper] cleanup supervisor_pilot 3883125 3269096
[2026-04-02 01:38:16] 2026-04-01 23:38:16,640 [wrapper] Test setup, not cleaning
[2026-04-02 01:38:16] 2026-04-01 23:38:16,645 [wrapper] apfmon messages muted
[2026-04-02 01:38:16] 2026-04-01 23:38:16,649 [wrapper] ==== wrapper stdout END ====
[2026-04-02 01:38:16] 2026-04-01 23:38:16,653 [wrapper] ==== wrapper stderr END ====
[2026-04-02 01:38:16]  *** Error codes and diagnostics ***
[2026-04-02 01:38:16]     "exeErrorCode": 0,
[2026-04-02 01:38:16]     "exeErrorDiag": "",
[2026-04-02 01:38:16]     "pilotErrorCode": 0,
[2026-04-02 01:38:16]     "pilotErrorDiag": "",
[2026-04-02 01:38:16]  *** Listing of results directory ***
[2026-04-02 01:38:16] total 704416
[2026-04-02 01:38:16] drwx------. 5 boinc boinc      4096 Mar 10 17:00 pilot3
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc    585013 Mar 28 03:21 pilot3.tar.gz
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc      5118 Mar 28 03:38 queuedata.json
[2026-04-02 01:38:16] -rwx------. 1 boinc boinc     36322 Mar 28 03:38 runpilot2-wrapper.sh
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc       100 Apr  1 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-02 01:38:16] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 18:35 run_atlas
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc       105 Apr  1 18:35 job.xml
[2026-04-02 01:38:16] -rw-r--r--. 3 boinc boinc 240959316 Apr  1 18:35 EVNT.49131531._000010.pool.root.1
[2026-04-02 01:38:16] -rw-r--r--. 3 boinc boinc 240959316 Apr  1 18:35 ATLAS.root_0
[2026-04-02 01:38:16] -rw-r--r--. 2 boinc boinc    597543 Apr  1 18:35 input.tar.gz
[2026-04-02 01:38:16] -rw-r--r--. 2 boinc boinc     15845 Apr  1 18:35 start_atlas.sh
[2026-04-02 01:38:16] drwxrwx--x. 2 boinc boinc      4096 Apr  1 18:35 shared
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc         0 Apr  1 18:35 boinc_lockfile
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc      2604 Apr  1 19:30 pandaJob.out
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc   1005501 Apr  1 19:30 agis_schedconf.cvmfs.json
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc       444 Apr  1 19:30 workernode_map.json
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc      6629 Apr  1 19:36 init_data.xml
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc       531 Apr  2 01:36 boinc_task_state.xml
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc 228401060 Apr  2 01:36 HITS.49179468._000496.pool.root.1
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc        97 Apr  2 01:37 pilot_heartbeat.json
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc      1028 Apr  2 01:37 memory_monitor_summary.json
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc   1511579 Apr  2 01:37 agis_ddmendpoints.agis.ALL.json
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc    518665 Apr  2 01:37 log.49179468._000496.job.log.tgz.1
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc      6348 Apr  2 01:37 heartbeat.json
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc      8192 Apr  2 01:38 boinc_mmap_file
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc        28 Apr  2 01:38 wrapper_checkpoint.txt
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc       824 Apr  2 01:38 pilotlog.txt
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc   3012185 Apr  2 01:38 log.49179468._000496.job.log.1
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc       357 Apr  2 01:38 output.list
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc       620 Apr  2 01:38 runtime_log
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc   3553280 Apr  2 01:38 result.tar.gz
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc       791 Apr  2 01:38 urpLDmekYQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmWqIKDmkDqnwn.diag
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc      9299 Apr  2 01:38 runtime_log.err
[2026-04-02 01:38:16] -rw-r--r--. 1 boinc boinc     23367 Apr  2 01:38 stderr.txt
[2026-04-02 01:38:16] HITS file was successfully produced:
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc 228401060 Apr  2 01:36 shared/HITS.pool.root.1
[2026-04-02 01:38:16]  *** Contents of shared directory: ***
[2026-04-02 01:38:16] total 462440
[2026-04-02 01:38:16] -rw-r--r--. 3 boinc boinc 240959316 Apr  1 18:35 ATLAS.root_0
[2026-04-02 01:38:16] -rw-r--r--. 2 boinc boinc    597543 Apr  1 18:35 input.tar.gz
[2026-04-02 01:38:16] -rw-r--r--. 2 boinc boinc     15845 Apr  1 18:35 start_atlas.sh
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc 228401060 Apr  2 01:36 HITS.pool.root.1
[2026-04-02 01:38:16] -rw-------. 1 boinc boinc   3553280 Apr  2 01:38 result.tar.gz
01:38:18 (3247656): run_atlas exited; CPU time 86342.486178
01:38:18 (3247656): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN